scholarly journals Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, Diaphorina citri, reveals novel features

2021 ◽  
Author(s):  
Teresa Shippy ◽  
Prashant S Hosmani ◽  
Mirella Flores-Gonzalez ◽  
Lukas A Mueller ◽  
Wayne B Hunter ◽  
...  
Keyword(s):  
Hox Genes ◽  
Regional Identity ◽  
Asian Citrus Psyllid ◽  
Expression Data ◽  
Diaphorina Citri ◽  
Sex Combs Reduced ◽  
Hox Cluster ◽  
Sex Combs ◽  
First Time ◽  
Anterior Posterior

Hox genes and their cofactors are essential developmental genes that specify regional identity in animals, including insects. A particularly interesting feature of Hox genes is their conserved arrangement in clusters in the same order in which they specify identity along the anterior-posterior axis. Among insects, breaks in the cluster have been reported in a few species, but these seem to be the exception rather than the rule. We have annotated the ten Hox genes of the Asian citrus psyllid, Diaphorina citri, and determined that there is a split in its Hox cluster between the Deformed and Sex combs reduced genes. This is the first time a break at this position has been observed in an insect Hox cluster. We have also annotated the D. citri orthologs of the Hox cofactor genes homothorax, PKNOX and extradenticle. Interestingly, we found an additional copy of extradenticle in D. citri that appears to be a retrogene. Expression data and sequence conservation suggest that the extradenticle retrogene may have retained the original extradenticle function and allowed the parental extradenticle gene to diverge.

Sequence of the Tribolium castaneum Homeotic Complex: The Region Corresponding to the Drosophila melanogaster Antennapedia Complex

Genetics ◽  
2002 ◽  
Vol 160 (3) ◽  
pp. 1067-1074
Author(s):  
Susan J Brown ◽  
John P Fellers ◽  
Teresa D Shippy ◽  
Elizabeth A Richardson ◽  
Mark Maxwell ◽  
...  
Keyword(s):  
Tribolium Castaneum ◽  
Hox Genes ◽  
Transcription Unit ◽  
Sex Combs Reduced ◽  
Sex Combs ◽  
Selector Genes ◽  
Homeotic Selector Genes ◽  
Encoding Genes ◽  
Single Cluster ◽  
Homeotic Selector

Abstract The homeotic selector genes of the red flour beetle, Tribolium castaneum, are located in a single cluster. We have sequenced the region containing the homeotic selector genes required for proper development of the head and anterior thorax, which is the counterpart of the ANTC in Drosophila. This 280-kb interval contains eight homeodomain-encoding genes, including single orthologs of the Drosophila genes labial, proboscipedia, Deformed, Sex combs reduced, fushi tarazu, and Antennapedia, as well as two orthologs of zerknüllt. These genes are all oriented in the same direction, as are the Hox genes of amphioxus, mice, and humans. Although each transcription unit is similar to its Drosophila counterpart in size, the Tribolium genes contain fewer introns (with the exception of the two zerknüllt genes), produce shorter mRNAs, and encode smaller proteins. Unlike the ANTC, this region of the Tribolium HOMC contains no additional genes.

scholarly journals Annotation of segmentation pathway genes in the Asian citrus psyllid, Diaphorina citri

Gigabyte ◽  
2021 ◽  
Vol 2021 ◽  
pp. 1-13
Author(s):  
Sherry Miller ◽  
Teresa D. Shippy ◽  
Prashant S. Hosmani ◽  
Mirella Flores-Gonzalez ◽  
Lukas A. Mueller ◽  
...  
Keyword(s):  
Asian Citrus Psyllid ◽  
Control Methods ◽  
Diaphorina Citri ◽  
Segment Polarity Genes ◽  
Gap Genes ◽  
Segment Polarity ◽  
Protein Gradients ◽  
Pest Control Methods ◽  
Pair Rule ◽  
Anterior Posterior

Insects have a segmented body plan that is established during embryogenesis when the anterior–posterior (A–P) axis is divided into repeated units by a cascade of gene expression. The cascade is initiated by protein gradients created by translation of maternally provided mRNAs, localized at the anterior and posterior poles of the embryo. Combinations of these proteins activate specific gap genes to divide the embryo into distinct regions along the anterior–posterior axis. Gap genes then activate pair-rule genes, which are usually expressed in parts of every other segment. The pair-rule genes, in turn, activate expression of segment polarity genes in a portion of each segment. The segmentation genes are generally conserved among insects, although there is considerable variation in how they are deployed. We annotated 25 segmentation gene homologs in the Asian citrus psyllid, Diaphorina citri. Most of the genes expected to be present in D. citri based on their phylogenetic distribution in other insects were identified and annotated. Two exceptions were eagle and invected, which are present in at least some hemipterans, but were not found in D. citri. Many of the segmentation pathway genes are likely to be essential for D. citri development, and thus they may be useful targets for gene-based pest control methods.

scholarly journals An atlas of seven zebrafish hox cluster mutants provides insights into sub/neofunctionalization of vertebrate Hox clusters

Development ◽  
2021 ◽  
Vol 148 (11) ◽  
Author(s):  
Kazuya Yamada ◽  
Akiteru Maeno ◽  
Soh Araki ◽  
Morimichi Kikuchi ◽  
Masato Suzuki ◽  
...  
Keyword(s):  
Hox Genes ◽  
Main Body ◽  
Loss Of Function ◽  
Micro Computed Tomography ◽  
Genetic Studies ◽  
Hox Cluster ◽  
Species Specific ◽  
First Time ◽  
Hox Clusters ◽  
Tomography Scan

ABSTRACT Vertebrate Hox clusters are comprised of multiple Hox genes that control morphology and developmental timing along multiple body axes. Although results of genetic analyses using Hox-knockout mice have been accumulating, genetic studies in other vertebrates have not been sufficient for functional comparisons of vertebrate Hox genes. In this study, we isolated all of the seven hox cluster loss-of-function alleles in zebrafish using the CRISPR-Cas9 system. Comprehensive analysis of the embryonic phenotype and X-ray micro-computed tomography scan analysis of adult fish revealed several species-specific functional contributions of homologous Hox clusters along the appendicular axis, whereas important shared general principles were also confirmed, as exemplified by serial anterior vertebral transformations along the main body axis, observed in fish for the first time. Our results provide insights into discrete sub/neofunctionalization of vertebrate Hox clusters after quadruplication of the ancient Hox cluster. This set of seven complete hox cluster loss-of-function alleles provide a formidable resource for future developmental genetic analysis of the Hox patterning system in zebrafish.

Analysis of Drosophila proboscipedia mutant alleles

Genome ◽  
2004 ◽  
Vol 47 (3) ◽  
pp. 600-609 ◽  
Author(s):  
I Tayyab ◽  
H M Hallahan ◽  
A Percival-Smith
Keyword(s):  
Dna Sequence ◽  
Hox Genes ◽  
Genetic Interaction ◽  
Direct Interaction ◽  
Protein Product ◽  
Maxillary Palp ◽  
Phenotypic Analysis ◽  
Sex Combs Reduced ◽  
Important Region ◽  
Sex Combs

Proboscipedia (PB) is a HOX protein required for adult maxillary palp and proboscis formation. To identify domains of PB important for function, 21 pb point mutant alleles were sequenced. Twelve pb alleles had DNA sequence changes that encode an altered PB protein product. The DNA sequence changes of these 12 alleles fell into 2 categories: missense alleles that effect the PB homeodomain (HD), and nonsense or frameshift alleles that result in C-terminal truncations of the PB protein. The phenotypic analysis of the pb homeobox missense alleles suggests that the PB HD is required for maxillary palp and proboscis development and pb – Sex combs reduced (Scr) genetic interaction. The phenotypic analysis of the pb nonsense or frameshift alleles suggests that the C-terminus is an important region required for maxillary palp and proboscis development and pb–Scr genetic interaction. PB and SCR do not interact directly with one another in a co-immunoprecipitation assay and in a yeast two-hybrid analysis, which suggests the pb–Scr genetic interaction is not mediated by a direct interaction between PB and SCR.Key words: proboscipedia, Sex combs reduced, Hox genes, mutant analysis, Drosophila body plan, appendage development.

scholarly journals Hox genes mediate the escalation of sexually antagonistic traits in water striders

2019 ◽  
Vol 15 (2) ◽  
pp. 20180720 ◽  
Author(s):  
Antonin Jean Johan Crumière ◽  
Abderrahman Khila
Keyword(s):  
Sexual Conflict ◽  
Hox Genes ◽  
Complete Loss ◽  
Water Strider ◽  
Fitness Costs ◽  
Sex Combs Reduced ◽  
Hox Gene ◽  
Water Striders ◽  
Sex Combs ◽  
Sex Comb

Sexual conflict occurs when traits favoured in one sex impose fitness costs on the other sex. In the case of sexual conflict over mating rate, the sexes often undergo antagonistic coevolution and escalation of traits that enhance females' resistance to superfluous mating and traits that increase males' persistence. How this escalation in sexually antagonistic traits is established during ontogeny remains unclear. In the water strider Rhagovelia antilleana, male persistence traits consist of sex combs on the forelegs and multiple rows of spines and a thick femur in the rear legs. Female resistance traits consist of a prominent spike-like projection of the pronotum. RNAi knockdown against the Hox gene Sex Combs Reduced resulted in the reduction in both the sex comb in males and the pronotum projection in females. RNAi against the Hox gene Ultrabithorax resulted in the complete loss or reduction of all persistence traits in male rear legs. These results demonstrate that Hox genes can be involved in intra- and inter-locus sexual conflict and mediate escalation of sexually antagonistic traits.

scholarly journals Disappearance of Temporal Collinearity in Vertebrates and its Eventual Reappearance

2021 ◽  
Author(s):  
Spyros Papageorgiou
Keyword(s):  
Hox Genes ◽  
Hox Cluster ◽  
Spatial Dimensions ◽  
Anterior Posterior ◽  
As If ◽  
Anterior Posterior Axis

It was observed that a cluster of ordered genes (Hox1, Hox2, Hox3,…) in the genome are activated in the ontogenetic units (1, 2, 3,…) of an embryo along the Anterior/Posterior axis following the same order of the Hox genes. This Spatial Collinearity (SC) is very strange since it correlates events of very different spatial dimensions. It was later observed in vertebrates, that, in the above ordering, first is Hox1expressed in ontogenetic unit 1, followed later by Hox2 in unit 2, and even later Hox3 in unit 3….This temporal collinearity (TC) is an enigma and even to-day is explored in depth. In 1999 T. Kondo and D. Duboule, after posterior upstream extended DNA excisions , concluded that the Hox cluster behaves ‘as if’ TC disappears. Here the consideration of TC really disappearing is taken face value and its repercussions are analyzed. Furthermore, an experiment is proposed to test TC disappearance. An outcome of this experiment could be the reappearance (partial or total) of TC.

scholarly journals Hox genes limit germ cell formation in the short germ insect Gryllus bimaculatus

2018 ◽  
Author(s):  
Austen A. Barnett ◽  
Taro Nakamura ◽  
Cassandra G. Extavour
Keyword(s):  
Hox Genes ◽  
Primordial Germ Cells ◽  
Cell Formation ◽  
Gryllus Bimaculatus ◽  
Sex Combs Reduced ◽  
Body Regions ◽  
Sex Combs ◽  
Hemimetabolous Insect ◽  
Encoding Genes ◽  
Germ Cell Formation

AbstractHox genes are conserved transcription factor-encoding genes that specify the identity of body regions in bilaterally symmetrical animals. In the cricket Gryllus bimaculatus, a member of the hemimetabolous insect group Orthoptera, the induction of a subset of mesodermal cells to form the primordial germ cells (PGCs) is restricted to the second through the fourth abdominal segments (A2-A4). In numerous insect species, the Hox genes Sex-combs reduced (Scr), Antennapedia (Antp), Ultrabithorax (Ubx) and abdominal-A (abd-A) jointly regulate the identities of middle and posterior body segments, suggesting that these genes may restrict PGC formation to specific abdominal segments in G. bimaculatus. Here we show that all of these Hox genes, either individually or in segment-specific combinations, restrict PGC formation. Our data provides evidence for a segmental Hox code used to regulate the placement of PGC formation, reminiscent of the segmental Hox codes used in other arthropod groups to establish other aspects of segmental identity. These data also provide, to our knowledge, the first evidence for this ancient group of genes in determining PGC placement within the context of axial patterning in any animal studied thus far.

Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk

Development ◽  
1998 ◽  
Vol 125 (3) ◽  
pp. 407-420 ◽  
Author(s):  
V.E. Prince ◽  
L. Joly ◽  
M. Ekker ◽  
R.K. Ho
Keyword(s):  
Hox Genes ◽  
Genomic Organization ◽  
Expression Patterns ◽  
Regional Identity ◽  
Hoxa Cluster ◽  
Hox Cluster ◽  
Sequence Homologies ◽  
Race Pcr ◽  
Linkage Relationships ◽  
Hox Clusters

The Hox genes are implicated in conferring regional identity to the anteroposterior axis of the developing embryo. We have characterized the organization and expression of hox genes in the teleost zebrafish (Danio rerio), and compared our findings with those made for the tetrapod vertebrates. We have isolated 32 zebrafish hox genes, primarily via 3′RACE-PCR, and analyzed their linkage relationships using somatic cell hybrids. We find that in comparison to the tetrapods, zebrafish has several additional hox genes, both within and beyond the expected 4 hox clusters (A-D). For example, we have isolated a member of hox paralogue group 8 lying on the hoxa cluster, and a member of hox paralogue group 10 lying on the b cluster, no equivalent genes have been reported for mouse or human. Beyond the 4 clusters (A-D) we have isolated a further 3 hox genes (the hoxx and y genes), which according to their sequence homologies lie in paralogue groups 4, 6, and 9. The hoxx4 and hoxx9 genes occur on the same set of hybrid chromosomes, hinting at the possibility of an additional hox cluster for the zebrafish. Similar to their tetrapod counterparts, zebrafish hox genes (including those with no direct tetrapod equivalent) demonstrate colinear expression along the anteroposterior (AP) axis of the embryo. However, in comparison to the tetrapods, anterior hox expression limits are compacted over a short AP region; some members of adjacent paralogue groups have equivalent limits. It has been proposed that during vertebrate evolution, the anterior limits of Hox gene expression have become dispersed along the AP axis allowing the genes to take on novel patterning roles and thus leading to increased axial complexity. In the teleost zebrafish, axial organization is relatively simple in comparison to that of the tetrapod vertebrates; this may be reflected by the less dispersed expression domains of the zebrafish hox genes.

TheDrosophilaproboscis is specified by two Hox genes,proboscipediaandSex combs reduced, via repression of leg and antennal appendage genes

Development ◽  
2001 ◽  
Vol 128 (14) ◽  
pp. 2803-2814 ◽  
Author(s):  
Arhat Abzhanov ◽  
Stacy Holtzman ◽  
Thomas C. Kaufman
Keyword(s):  
Limb Development ◽  
Hox Genes ◽  
Distinct Type ◽  
Wild Type ◽  
Fate Map ◽  
Genetic Studies ◽  
Unique Type ◽  
Sex Combs Reduced ◽  
Sex Combs ◽  
Labial Disc

The proboscis is one of the most highly modified appendages in Drosophila melanogaster. However, the phenotypes of proboscipedia (pb) mutants, which transform the proboscis into leg or antenna, indicate a basic homology among these limbs. Recent genetic studies have revealed a developmental system for patterning appendages and identified several genes required for limb development. Among these are: extradenticle (exd), homothorax (hth), dachshund (dac), Distal-less (Dll) and spalt (sal). These limb genes have not been well studied in wild-type mouthparts and their role if any in this appendage is not well understood. Here we demonstrate that the homeotic gene products Proboscipedia (Pb) and Sex combs reduced (Scr) regulate the limb genes in the labial disc to give rise to a unique type of appendage, the proboscis. Pb inhibits exd, dac and sal expression and downregulates Dll. This observation explains the ability of Pb to inhibit the effects of ectopically expressed trunk Hox genes in the proboscis, to suppress leg identity in the trunk and to transform antenna to maxillary palp. Scr suppresses sal expression and also downregulates Dll in the labial discs; discs mutant for both pb and Scr give rise to complete antennae, further demonstrating appendage homology. In the labial disc, Pb positively regulates transcription of Scr, whereas in the embryo, Scr positively regulates pb. Additionally, our results suggests a revised fate map of the labial disc. We conclude that the proboscis constitutes a genetically distinct type of appendage whose morphogenesis does not require several important components of leg and/or antennal patterning systems, but retains distal segmental homology with these appendages.

scholarly journals Organogenesis in Drosophila melanogaster: embryonic salivary gland determination is controlled by homeotic and dorsoventral patterning genes

Development ◽  
1992 ◽  
Vol 114 (1) ◽  
pp. 49-57 ◽  
Author(s):  
S. Panzer ◽  
D. Weigel ◽  
S.K. Beckendorf
Keyword(s):  
Drosophila Melanogaster ◽  
Salivary Gland ◽  
Homeotic Gene ◽  
Dorsoventral Patterning ◽  
Sex Combs Reduced ◽  
Sex Combs ◽  
Positive Action ◽  
Gland Morphogenesis ◽  
Pattern Forming ◽  
Anterior Posterior

We have investigated Drosophila salivary gland determination by examining the effects of mutations in pattern forming genes on the salivary gland primordium. We find that the anterior-posterior extent of the primordium, a placode of columnar epithelial cells derived from parasegment 2, is established by the positive action of the homeotic gene Sex combs reduced (Scr). Embryos mutant for Scr lack a detectable placode, while ectopic Scr expression leads to the formation of ectopic salivary glands. In contrast, the dorsal-ventral extent of the placode is regulated negatively. Functions dependent on the decapentaplegic product place a dorsal limit on the placode, while dorsal-dependent genes act to limit the placode ventrally. We propose a model in which these pattern forming genes act early to determine the salivary gland anlage by regulating the expression of salivary gland determining genes, which in turn control genes that are involved in salivary gland morphogenesis.

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