scholarly journals BIOTIN ATTACHMENT DOMAIN-CONTAINING proteins, inhibitors of ACCase, are regulated by WRINKLED1

2019 ◽  
Author(s):  
Hui Liu ◽  
Zhiyang Zhai ◽  
Kate Kuczynski ◽  
Jantana Keereetaweep ◽  
Jorg Schwender ◽  
...  
Keyword(s):  
Acid Synthesis ◽  
Lipid Homeostasis ◽  
Wild Type ◽  
Short Root ◽  
Protein Levels ◽  
Genes Encoding ◽  
Synthetic Capacity ◽  
Nanomolar Range ◽  
Indole 3 Acetic Acid

AbstractWRINKLED1 (WRI1) is a transcriptional activator that binds to AW boxes in the promoters of many genes from central metabolism and FA synthesis, resulting in their transcription. BIOTIN ATTACHMENT DOMAIN-CONTAINING (BADC) proteins are homologs of BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) that lack a biotin-attachment domain and are therefore inactive. In the presence of excess FA, BADC1 and BADC3 are primarily responsible for the observed long-term irreversible inhibition of ACETYL-COA CARBOXYLASE (ACCase), and consequently FA synthesis. Purified WRI1 bound with high affinity (Kds in the low nanomolar range) to canonical AW-boxes from the promoters of all three BADC genes. Consistent with this observation, the expression of BADC1, BADC2 and BADC3 genes and BADC1 protein levels were reduced in wri1-1 relative to wild type (WT), and BADCs gene expression and BADC1 protein levels also were elevated upon WRI1 overexpression. The double mutant badc1badc2 phenocopied wri1-1 with respect to both reduction in root length, and elevation of indole-3-acetic acid-Asp (IAA-Asp) levels relative to WT. Overexpression of BADC1 in wri1-1 decreased its IAA-Asp and partially rescued its short-root phenotype demonstrating a role for BADCs in seedling establishment. That WRI1 positively regulates genes encoding both FA synthesis and BADCs i.e., conditional inhibitors of FA synthesis, represents a coordinated mechanism to achieve lipid homeostasis in which plants couple the transcription their FA synthetic capacity with their capacity to biochemically downregulate it.One sentence summaryWRI1 regulates genes encoding both fatty acid synthesis and inhibitors of FA synthesis (BADCs), creating a lipid homeostatic mechanism in which the transcription of FA synthetic capacity is coordinated with the capacity to biochemically downregulate FA synthesis.

scholarly journals Alopecia in Harlequin mutant mice is associated with reduced AIF protein levels and expression of retroviral elements

2020 ◽  
Author(s):  
Maik Hintze ◽  
Sebastian Griesing ◽  
Marion Michels ◽  
Birgit Blanck ◽  
Lena Wischhof ◽  
...  
Keyword(s):  
Hair Growth ◽  
Transcriptional Regulators ◽  
Mutant Mice ◽  
Wild Type ◽  
Protein Levels ◽  
Expression Of Genes ◽  
Genes Encoding ◽  
Keratinocyte Cell ◽  
Apoptosis Inducing Factor ◽  
Hair Cortex

AbstractWe investigated the contribution of apoptosis-inducing factor (AIF), a key regulator of mitochondrial biogenesis, in supporting hair growth. We report that pelage abnormalities developed during hair follicle (HF) morphogenesis in Harlequin (Hq) mutant mice. Fragility of the hair cortex was associated with decreased expression of genes encoding structural hair proteins, though key transcriptional regulators of HF development were expressed at normal levels. Notably, Aifm1 (R200 del) knockin males and Aifm1(R200 del)/Hq females showed minor hair defects, despite substantially reduced AIF levels. Furthermore, we cloned the integrated ecotropic provirus of the Aifm1Hq allele. We found that its overexpression in wild-type keratinocyte cell lines led to down-regulation of HF-specific Krt84 and Krtap3-3 genes without altering Aifm1 or epidermal Krt5 expression. Together, our findings imply that pelage paucity in Hq mutant mice is mechanistically linked to severe AIF deficiency and is associated with the expression of retroviral elements that might potentially influence the transcriptional regulation of structural hair proteins.

scholarly journals Iron-Dependent Cytochrome c1 Expression Is Mediated by the Status of Heme in Bradyrhizobium japonicum

2005 ◽  
Vol 187 (15) ◽  
pp. 5084-5089 ◽  
Author(s):  
Tao Gao ◽  
Mark R. O'Brian
Keyword(s):  
Bradyrhizobium Japonicum ◽  
Aminolevulinic Acid ◽  
Iron Status ◽  
Covalent Binding ◽  
Dependent Manner ◽  
Wild Type ◽  
Prosthetic Group ◽  
Protein Levels ◽  
Genes Encoding ◽  
In The Wild

ABSTRACT The heme prosthetic group of heme proteins contains iron, which can be a limiting nutrient. Here, we show that cytochrome c 1 protein from Bradyrhizobium japonicum was strongly affected by the iron status, with low expression in cells grown under iron limitation. This control was not affected in mutants encoding the iron regulator Irr or Fur. Furthermore, cytochrome c 1 mRNA was not influenced by the iron status, suggesting control at a posttranscriptional step. Cytochrome c 1 protein levels were very low in mutants defective in the genes encoding δ-aminolevulinic acid (ALA) synthase and ferrochelatase, enzymes that catalyze the first and final steps of the heme biosynthetic pathway, respectively. Iron-dependent cytochrome c 1 expression was restored in the ALA synthase mutant by supplementation of the medium with the heme precursor ALA. Supplementation with heme resulted in high levels of cytochrome c 1 protein in the wild type and in both mutants, but expression was no longer iron dependent. Cytochrome c 1 is synthesized as a protein precursor fused with cytochrome b. A plasmid-borne construct encoding only cytochrome c 1 was expressed in an iron- and heme-dependent manner similar to that of the wild-type gene, indicating that control by those effectors is not linked to posttranslational processing of the fusion protein. Mutation of the cytochrome c 1 cysteines involved in covalent binding to heme nearly abolished immunodetectable protein. Thus, defects in heme synthesis or heme binding abrogate cytochrome c 1 accumulation, apparently due to protein degradation. We suggest that iron-dependent cytochrome c 1 expression is mediated by heme availability for heme protein formation

scholarly journals Inactivation of Ca2+/H+Exchanger in Synechocystis sp. Strain PCC 6803 Promotes Cyanobacterial Calcification by Upregulating CO2-Concentrating Mechanisms

2013 ◽  
Vol 79 (13) ◽  
pp. 4048-4055 ◽  
Author(s):  
Hai-Bo Jiang ◽  
Hui-Min Cheng ◽  
Kun-Shan Gao ◽  
Bao-Sheng Qiu
Keyword(s):  
Transcript Level ◽  
Wild Type ◽  
Content Type ◽  
Protein Levels ◽  
Genes Encoding ◽  
In The Wild ◽  
Co2 Concentrating Mechanisms ◽  
Mutant Cells ◽  
Global Carbon ◽  
Pcc 6803

ABSTRACTCyanobacteria are important players in the global carbon cycle, accounting for approximately 25% of global CO2fixation. Their CO2-concentrating mechanisms (CCMs) are thought to play a key role in cyanobacterial calcification, but the mechanisms are not completely understood. InSynechocystissp. strain PCC 6803, a single Ca2+/H+exchanger (Slr1336) controls the Ca2+/H+exchange reaction. We knocked out the exchanger and investigated the effects on cyanobacterial calcification and CCMs. Inactivation ofslr1336significantly increased the calcification rate and decreased the zeta potential, indicating a relatively stronger Ca2+-binding ability. Some genes encoding CCM-related components showed increased expression levels, including thecmpAgene, which encodes the Ca2+-dependent HCO3−transporter BCT1. The transcript level ofcmpAin the mutant was 30 times that in wild type. A Western blot analysis further confirmed that protein levels of CmpA were higher in the mutant than the wild type. Measurements of inorganic carbon fluxes and O2evolution proved that both the net HCO3−uptake rate and the BCT1 transporter supported photosynthetic rate in theslr1336mutant were significantly higher than in the wild type. This would cause the mutant cells to liberate more OH−ions out of the cell and stimulate CaCO3precipitation in the microenvironment. We conclude that the mutation of the Ca2+/H+exchanger inSynechocystispromoted the cyanobacterial calcification process by upregulating CCMs, especially the BCT1 HCO3−transporter. These results shed new light on the mechanism by which CCM-facilitated photosynthesis promotes cyanobacterial calcification.

scholarly journals The Flagellar Hook Protein, FlgE, of Salmonella enterica Serovar Typhimurium Is Posttranscriptionally Regulated in Response to the Stage of Flagellar Assembly

2000 ◽  
Vol 182 (14) ◽  
pp. 4044-4050 ◽  
Author(s):  
Heather R. Bonifield ◽  
Shigeru Yamaguchi ◽  
Kelly T. Hughes
Keyword(s):  
Posttranscriptional Regulation ◽  
Negative Regulation ◽  
Wild Type ◽  
Rnase Protection ◽  
Protein Levels ◽  
Protein Mutants ◽  
Serovar Typhimurium ◽  
Genes Encoding ◽  
Associated Proteins ◽  
Flagellar Assembly

ABSTRACT We investigated the posttranscriptional regulation offlgE, a class 2 gene that encodes the hook subunit protein of the flagella. RNase protection assays demonstrated that theflgE gene was transcribed at comparable levels in numerous strains defective in known steps of flagellar assembly. However, Western analyses of these strains demonstrated substantial differences in FlgE protein levels. Although wild-type FlgE levels were observed in strains with deletions of genes encoding components of the switch complex and the flagellum-specific secretion apparatus, no protein was detected in a strain with deletions of the rod, ring, and hook-associated proteins. To determine whether FlgE levels were affected by the stage of hook–basal-body assembly, Western analysis was performed on strains with mutations at individual loci encompassed by the deletion. FlgE protein was undetectable in rod mutants, intermediate in ring mutants, and wild type in hook-associated protein mutants. The lack of negative regulation in switch complex and flagellum-specific secretion apparatus deletion mutants blocked for flagellar construction prior to rod assembly suggests that these structures play a role in the negative regulation of FlgE. Quantitative Western analyses of numerous flagellar mutants indicate that FlgE levels reflect the stage at which flagellar assembly is blocked. These data provide evidence for negative posttranscriptional regulation of FlgE in response to the stage of flagellar assembly.

scholarly journals Radiation-induced gliomas represent H3-/IDH-wild type pediatric gliomas with recurrent PDGFRA amplification and loss of CDKN2A/B

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Maximilian Y. Deng ◽  
Dominik Sturm ◽  
Elke Pfaff ◽  
Martin Sill ◽  
Damian Stichel ◽  
...  
Keyword(s):  
Lymphoblastic Leukemia ◽  
Cranial Irradiation ◽  
Molecular Signature ◽  
Wild Type ◽  
Histone 3 ◽  
Genes Encoding ◽  
Radiation Induced ◽  
Hotspot Mutations

AbstractLong-term complications such as radiation-induced second malignancies occur in a subset of patients following radiation-therapy, particularly relevant in pediatric patients due to the long follow-up period in case of survival. Radiation-induced gliomas (RIGs) have been reported in patients after treatment with cranial irradiation for various primary malignancies such as acute lymphoblastic leukemia (ALL) and medulloblastoma (MB). We perform comprehensive (epi-) genetic and expression profiling of RIGs arising after cranial irradiation for MB (n = 23) and ALL (n = 9). Our study reveals a unifying molecular signature for the majority of RIGs, with recurrent PDGFRA amplification and loss of CDKN2A/B and an absence of somatic hotspot mutations in genes encoding histone 3 variants or IDH1/2, uncovering diagnostic markers and potentially actionable targets.

scholarly journals d-Pantothenate Synthesis inCorynebacterium glutamicum and Use of panBC and Genes Encoding l-Valine Synthesis ford-Pantothenate Overproduction

1999 ◽  
Vol 65 (5) ◽  
pp. 1973-1979 ◽  
Author(s):  
Hermann Sahm ◽  
Lothar Eggeling
Keyword(s):  
Wild Type Strain ◽  
Fold Increase ◽  
Acid Synthesis ◽  
Wild Type ◽  
Amino Acid Synthesis ◽  
Branched Chain Amino Acid ◽  
Pantothenate Synthetase ◽  
Genes Encoding ◽  
Branched Chain ◽  
Specific Part

d-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis. We quantified three of these enzyme activities inCorynebacterium glutamicum and determined specific activities ranging from 0.00014 to 0.001 μmol/min mg (protein)−1. The genes encoding the ketopantoatehydroxymethyl transferase and the pantothenate synthetase were cloned, sequenced, and functionally characterized. These studies suggest that panBC constitutes an operon. By usingpanC, an assay system was developed to quantifyd-pantothenate. The wild type of C. glutamicumwas found to accumulate 9 μg of this vitamin per liter. A strain was constructed (i) to abolish l-isoleucine synthesis, (ii) to result in increased ketoisovalerate formation, and (iii) to enable its further conversion to d-pantothenate. The best resulting strain has ilvA deleted from its chromosome and has two plasmids to overexpress genes of ketoisovalerate (ilvBNCD) and d-pantothenate (panBC) synthesis. With this strain a d-pantothenate accumulation of up to 1 g/liter is achieved, which is a 105-fold increase in concentration compared to that of the original wild-type strain. From the series of strains analyzed it follows that an increased ketoisovalerate availability is mandatory to direct the metabolite flux into thed-pantothenate-specific part of the pathway and that the availability of β-alanine is essential for d-pantothenate formation.

scholarly journals Bile Acid Synthesis Disorders in Japan: Long-Term Outcome and Chenodeoxycholic Acid Treatment

2021 ◽  
Author(s):  
Akihiko Kimura ◽  
Tatsuki Mizuochi ◽  
Hajime Takei ◽  
Akira Ohtake ◽  
Jun Mori ◽  
...  
Keyword(s):  
Bile Acid ◽  
Chenodeoxycholic Acid ◽  
Acid Treatment ◽  
Acid Synthesis ◽  
Bile Acid Synthesis ◽  
Term Outcome ◽  
Long Term Outcome

scholarly journals Surfactant protein A reduces TLR4 and inflammatory cytokine mRNA levels in neonatal mouse ileum

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Lidan Liu ◽  
Chaim Z. Aron ◽  
Cullen M. Grable ◽  
Adrian Robles ◽  
Xiangli Liu ◽  
...  
Keyword(s):  
Proinflammatory Cytokine ◽  
Inflammatory Cytokine ◽  
Protein A ◽  
Surfactant Protein ◽  
Surfactant Protein A ◽  
Mrna Levels ◽  
Wild Type ◽  
Cytokine Mrna ◽  
Protein Levels ◽  
Cytokine Levels

AbstractLevels of intestinal toll-like receptor 4 (TLR4) impact inflammation in the neonatal gastrointestinal tract. While surfactant protein A (SP-A) is known to regulate TLR4 in the lung, it also reduces intestinal damage, TLR4 and inflammation in an experimental model of necrotizing enterocolitis (NEC) in neonatal rats. We hypothesized that SP-A-deficient (SP-A−/−) mice have increased ileal TLR4 and inflammatory cytokine levels compared to wild type mice, impacting intestinal physiology. We found that ileal TLR4 and proinflammatory cytokine levels were significantly higher in infant SP-A−/− mice compared to wild type mice. Gavage of neonatal SP-A−/− mice with purified SP-A reduced ileal TLR4 protein levels. SP-A reduced expression of TLR4 and proinflammatory cytokines in normal human intestinal epithelial cells (FHs74int), suggesting a direct effect. However, incubation of gastrointestinal cell lines with proteasome inhibitors did not abrogate the effect of SP-A on TLR4 protein levels, suggesting that proteasomal degradation is not involved. In a mouse model of experimental NEC, SP-A−/− mice were more susceptible to intestinal stress resembling NEC, while gavage with SP-A significantly decreased ileal damage, TLR4 and proinflammatory cytokine mRNA levels. Our data suggests that SP-A has an extrapulmonary role in the intestinal health of neonatal mice by modulating TLR4 and proinflammatory cytokines mRNA expression in intestinal epithelium.

scholarly journals Interplay between Pds5 and Rec8 in regulating chromosome axis length and crossover frequency

2021 ◽  
Vol 7 (11) ◽  
pp. eabe7920
Author(s):  
Meihui Song ◽  
Binyuan Zhai ◽  
Xiao Yang ◽  
Taicong Tan ◽  
Ying Wang ◽  
...  
Keyword(s):  
Recombination Frequency ◽  
Crossover Frequency ◽  
Wild Type ◽  
Protein Levels ◽  
Homolog Pairing ◽  
Meiotic Chromosomes ◽  
Homologous Chromosome Pairing ◽  
Axis Length ◽  
Chromosome Axis

Meiotic chromosomes have a loop/axis architecture, with axis length determining crossover frequency. Meiosis-specific Pds5 depletion mutants have shorter chromosome axes and lower homologous chromosome pairing and recombination frequency. However, it is poorly understood how Pds5 coordinately regulates these processes. In this study, we show that only ~20% of wild-type level of Pds5 is required for homolog pairing and that higher levels of Pds5 dosage-dependently regulate axis length and crossover frequency. Moderate changes in Pds5 protein levels do not explicitly impair the basic recombination process. Further investigations show that Pds5 does not regulate chromosome axes by altering Rec8 abundance. Conversely, Rec8 regulates chromosome axis length by modulating Pds5. These findings highlight the important role of Pds5 in regulating meiosis and its relationship with Rec8 to regulate chromosome axis length and crossover frequency with implications for evolutionary adaptation.

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