scholarly journals Genome diversity and species richness in mammals

2019 ◽  
Author(s):  
John Herrick ◽  
Bianca Sclavi
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Genome Size ◽  
Chromosomal Rearrangements ◽  
Synteny Block ◽  
Genome Diversity ◽  
Evolutionary Changes ◽  
Family Level ◽  
Size Standard ◽  
Different Levels

AbstractEvolutionary changes in karyotype have long been implicated in speciation events; however, the phylogenetic relationship between karyotype diversity and species richness in closely and distantly related mammalian lineages remains to be fully elucidated. Here we examine the association between genome diversity and species diversity across the class Mammalia. We tested five different metrics of genome diversity: clade-average genome size, standard deviation of genome size, diploid and fundamental numbers (karyotype diversity), sub-chromosomal rearrangements and percent synteny block conservation. We found a significant association between species richness (phylogenetic clade diversity) and genome diversity at both order and family level clades. Karyotype diversity provided the strongest support for a relationship between genome diversity and species diversity. Our results suggest that lineage specific variations in genome and karyotype stability can account for different levels of species diversity in mammals.

scholarly journals Genome size variation and species diversity in salamanders

2016 ◽  
Author(s):  
John Herrick ◽  
Bianca Sclavi
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Genome Size ◽  
Geographical Area ◽  
Negative Relationship ◽  
Size Variation ◽  
Exact Nature ◽  
Genome Size Variation ◽  
The Family ◽  
C Value

AbstractSalamanders (Urodela) have among the largest vertebrate genomes, ranging in size from 10 to 120 pg. Although changes in genome size often occur randomly and in the absence of selection pressure, non-random patterns of genome size variation are evident among specific vertebrate lineages. Several reports suggest a relationship between species richness and genome size, but the exact nature of that relationship remains unclear both within and across different taxonomic groups. Here we report i) a negative relationship between haploid genome size (C-value) and species richness at the family taxonomic level in salamander clades; ii) a correlation of C-value and species richness with clade crown-age but not with diversification rates; iii) strong associations between C-value and either geographical area or climatic niche rate. Finally, we report a relationship between C-value diversity and species diversity at both the family and genus level clades in urodeles.

scholarly journals What Does Productivity Really Mean? Towards an Integrative Paradigm in the Search for Biodiversity-Productivity Relationships

2013 ◽  
Vol 41 (1) ◽  
pp. 36 ◽  
Author(s):  
Liangjun HU ◽  
Qinfeng GUO
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Biomass Production ◽  
Real Root ◽  
Spatial Scaling ◽  
Ecological Processes ◽  
The Real ◽  
Community Or ◽  
Per Se ◽  
Underlying Mechanisms

How species diversity relates to productivity remains a major debate. To date, however, the underlying mechanisms that regulate the ecological processes involved are still poorly understood. Three major issues persist in early efforts at resolution. First, in the context that productivity drives species diversity, how the pathways operate is poorly-explained. Second, productivity  per se varies with community or ecosystem maturity. If diversity indeed drives productivity, the criterion of choosing appropriate measures for productivity is not available. Third, spatial scaling suggests that sampling based on small-plots may not be suitable for formulating species richness-productivity relationships (SRPRs). Thus, the long-standing assumption simply linking diversity with productivity and pursuing a generalizing pattern may not be robust. We argue that productivity, though defined as ‘the rate of biomass production’, has been measured in two ways environmental surrogates and biomass production leading to misinterpretations and difficulty in the pursuit of generalizable SRPRs. To tackle these issues, we developed an integrative theoretical paradigm encompassing richer biological and physical contexts and clearly reconciling the major processes of the systems, using proper productivity measures and sampling units. We conclude that loose interpretation and confounding measures of productivity may be the real root of current SRPR inconsistencies and debate.

scholarly journals Composition and diversity of anurans in the Restinga of the Conde municipality, northern coast of the state of Bahia, northeastern Brazil

2016 ◽  
Vol 16 (3) ◽  
Author(s):  
Felipe Augusto Trindade Gondim-Silva ◽  
Alessandra Rodrigues Santos Andrade ◽  
Rafael Oliveira Abreu ◽  
Jamile Santos Nascimento ◽  
Geovane Paixão Corrêa ◽  
...  
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Species Composition ◽  
Rainy Season ◽  
Dominant Species ◽  
The State ◽  
Northeastern Brazil ◽  
Freshwater Wetland ◽  
Northern Coast ◽  
Anuran Species

Abstract The Conde municipality is located in the northern coast of the state of Bahia (NC), northeastern Brazil, and is part of the Atlantic Tropical domain. The anuran fauna of the northern portion of the NC is still poorly known if compared to the southern portion. The Restinga is one of the predominant environments of the coastal plains of the NC and it is characterized essentially by presenting sandy soil covered by herbaceous and shrubby vegetation. The objective of this study was to determine the anuran species composition and diversity for the Restinga of the Conde municipality. Sampling was carried out at night by active search over four periods of five consecutive days each, two over the 'main rainy season' and two in a 'lesser rainy season', using 14 sample units (SUs) and five extra sample plots (EPs). We calculated dominance and species diversity using the Berger-Parker and Shannon-Wiener H' indices, respectively. We used accumulation curves and the Jackknife 1 estimator to estimate anuran species richness, considering only the data obtained from the SUs. We recorded 713 anuran specimens distributed within 33 species, 13 genera and five families (Bufonidae, Craugastoridae, Hylidae, Leptodactylidae and Microhylidae). The Hylidae and Leptodactylidae families had the highest species richness. Considering only the SUs (Jackknife 1 estimator in brackets), we recorded 28 species in the study area (33.9 ± 2.3), 13 in Shrubby Vegetation Zones - SVZ (20.8 ± 2.9) and 25 in Freshwater Wetland Zones - FWZ (28.9 ± 1.9). The abundance and species diversity of the FWZ (n = 638 specimens; H'= 2.4) were higher than those recorded for the SVZ (n = 52 specimens; H' = 1.9). The SVZ and FWZ showed distinct dominant species, wherein Pristimantis paulodutrai was the dominant species in SVZ and Scinax fuscomarginatus in FWZ. The Restinga of the Conde municipality stands out as the one with the highest anuran species richness already recorded considering only SVZ and FWZ. Moreover, its anuran species composition represented 55% of the anuran species known for the NC and included taxa common to three different morphoclimatic domains (Tropical Atlantic, Cerrado and Caatinga).

scholarly journals Fish species diversity in headwaters streams of Paraguay and Paraná Basins

2007 ◽  
Vol 50 (6) ◽  
pp. 1033-1042 ◽  
Author(s):  
Yzel Rondon Súarez ◽  
Sabrina Bigatão Valério ◽  
Karina Keyla Tondado ◽  
Alexandro Cezar Florentino ◽  
Thiago Rota Alves Felipe ◽  
...  
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Environmental Factors ◽  
Fish Species ◽  
Total Species Richness ◽  
Paraná Basin ◽  
Parana Basin ◽  
Number Of Individuals ◽  
Total Species ◽  
Fish Species Diversity

The influence of spatial, temporal and environmental factors on fish species diversity in headwater streams in Paraguay and Paraná basins, Brazil was examined. A total of 4,605 individuals were sampled, distributed in 60 species. The sampled streams in Paraná basin presented a larger total species richness (42) than Paraguay streams (40). However the estimated richness was larger in Paraguay basin (53) than Paraná streams (50). The streams of Paraná basin had a greater mean species richness and evenness, while more individuals per sample were found in the Paraguay basin. Difference between the sub-basins were found in the Paraguay basin, while for the basin of Paraná, richness and evenness vary significantly between the sub-basins, but the number of individuals varied seasonally. The most important environmental factors to species diversity and abundance were altitude, water temperature, stream width and stream depth for both the basins.

Diverse perennial crop mixtures sustain higher productivity over time based on ecological complementarity

2011 ◽  
Vol 26 (4) ◽  
pp. 317-327 ◽  
Author(s):  
Valentín D. Picasso ◽  
E. Charles Brummer ◽  
Matt Liebman ◽  
Philip M. Dixon ◽  
Brian J. Wilsey
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Biomass Production ◽  
Cropping Systems ◽  
Individual Species ◽  
Selection Effects ◽  
Complementarity Effect ◽  
Change Over Time ◽  
Diversity Effects ◽  
Over Time

AbstractCropping systems that rely on renewable energy and resources and are based on ecological principles could be more stable and productive into the future than current monoculture systems with serious unintended environmental consequences such as soil erosion and water pollution. In nonagricultural systems, communities with higher species diversity have higher productivity and provide other ecosystem services. However, communities of well-adapted crop species selected for biomass production may respond differently to increasing diversity. Diversity effects may be due to complementarity among species (complementary resource use and facilitative interactions) or positive selection effects (e.g., species with higher productivity dominate the mixture), and these effects may change over time or across environments. Our goal was to identify the ecological mechanisms causing diversity effects in a biodiversity experiment using agriculturally relevant species, and evaluate the implications for the design of sustainable cropping systems. We seeded seven perennial forage species in a replicated field experiment at two locations in Iowa, USA, and evaluated biomass productivity of monocultures and two- to six-species mixtures over 3 years after the establishment year under management systems of contrasting intensity: one or three harvests per year. Productivity increased with seeded species richness in all environments, and the positive relationship did not change over time. Polyculture overyielding was due to complementarity among species in the community rather than to selection effects of individual species. Complementarity increased as a log-linear function of species richness in all environments, and this trend was consistent across years. Legume–grass facilitation may explain much of this complementarity effect. Although individual species with high biomass production had a major effect on productivity of mixtures, the species producing the highest biomass in monoculture changed over the years in most environments. Furthermore, transgressive overyielding was observed and was more prevalent in later years, in some environments. We conclude that choosing a single well-adapted species for maximizing productivity may not be the best alternative over the long term and that high levels of species diversity should be included in the design of productive and ecologically sound agricultural systems.

Impacts of Prescribed Fire, Glyphosate, and Seeding on Cogongrass, Species Richness, and Species Diversity in Longleaf Pine

2013 ◽  
Vol 6 (4) ◽  
pp. 536-544 ◽  
Author(s):  
Stephen F. Enloe ◽  
Nancy J. Loewenstein ◽  
David W. Held ◽  
Lori Eckhardt ◽  
Dwight K. Lauer
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Prescribed Fire ◽  
Longleaf Pine ◽  
Pine Forests ◽  
Herbaceous Species ◽  
Integrated Strategies ◽  
Species Richness And Diversity ◽  
Herbicide Treatments ◽  
Rhizome Biomass

AbstractCogongrass [Imperata cylindrica (L.) Beauv.] is a warm-season, rhizomatous grass native to southeast Asia that has invaded thousands of hectares in the southeastern United States. Its negative impacts on pine forests have been well documented, and aggressive control is widely recommended. Although repeated herbicide treatments are effective for suppression, integrated strategies of prescribed burning coupled with herbicide treatment and revegetation are lacking in pine systems. In particular, longleaf pine forests, which are typically open, fire-dependent, communities, are highly susceptible to cogongrass, which is a pyrogenic species. To address management goals for cogongrass control and herbaceous restoration in longleaf pine forests better, field studies were conducted in southwestern Alabama from 2010 to 2012. Two longleaf pine forests with near-monotypic stands of cogongrass in the understory were selected for study. Treatments included combinations of winter prescribed fire, spring and fall glyphosate herbicide treatments, and seeding a mix of native, herbaceous species. Data were collected for three growing seasons following study initiation, and included seasonal herbaceous species cover and final cogongrass shoot and rhizome biomass. Species richness and diversity were calculated and analyzed to ascertain treatment effects over the duration of the study. Burning slightly improved cogongrass control with glyphosate, but had no effect on total cover, species richness, or species diversity. Three glyphosate treatments reduced total vegetative cover and nearly eliminated cogongrass cover, shoot, and rhizome biomass. Glyphosate and glyphosate + seeding also increased herbaceous species richness and diversity. However, aboveground productivity in treated plots was significantly lower than productivity in the untreated control, which was almost exclusively cogongrass. These studies indicate that glyphosate and integrated strategies utilizing glyphosate and seeding are very useful for cogongrass management and increasing herbaceous species richness and diversity in longleaf pine.

scholarly journals Assessment of species diversity and distribution of woody species on selected plots in Olokemeji Forest Reserve, Ogun State, Nigeria

2021 ◽  
Vol 22 (3) ◽  
pp. 43-50
Author(s):  
D.M. Taiwo ◽  
S.I. Udoh ◽  
S.O. Olaoti-Laaro ◽  
O.R. Jeminiwa ◽  
M.S. Jeminiwa
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Woody Species ◽  
Tectona Grandis ◽  
Importance Value ◽  
Forest Reserve ◽  
Lowland Rain Forest ◽  
Ogun State ◽  
The Status ◽  
And Function

The Assessment of forest species composition and species diversity is essential in understanding the status of tree population and diversity for conservation purpose. Olokemeji forest reserve is situated in the lowland rain  forest of south-western Nigeria and it occupies a total land area of 58.88 km2 . Six study plots of 50m2 each were randomly selected and designated as Frequently Burnt Plot 1, Frequently Burnt Plot 2, Harvested Plot, Unharvested Unburnt Plot, Arable Plot 1 and Arable Plot 2 for the purpose of assessment of species diversity and distribution of woody species. Seven species of trees were identified belonging to five families. One hundred and eighty two stands were enumerated, with Unharvested Unburnt Plot having the highest number of trees at 50. The dominance index for the woody flora was 1 in Frequently Burnt Plot 1 and 2 as well as Arable Plot 1 and 2 except for the Harvested Plot that had the lowest (0.29) while the Unharvested Unburnt Plot had 0.75. Highest species richness was recorded at the Harvested Plot at 0.71. The species diversity in Harvested Plot was low (1.54), while it was extremely low in Unharvested Unburnt Plot (0.43). Evenness index was lowest in the Unharvested Unburnt Plot at 0.43. Tectona grandis had the highest relative importance value in the Frequently Burnt Plot 1. The low species richness and species diversity is a direct indication of anthropogenic interference in the study plots and the forest reserve; this requires urgent mitigation to prevent a total loss of its structure and function as expected of a forest reserve. Keywords: Species, Diversity, Evenness, Anthropogenic, Forest, Dynamics

scholarly journals Baseline Assessments of Wildlife Biodiversity Within Selected Areas of Central Visayas, Philippines

2021 ◽  
Vol 6 (2) ◽  
pp. 27-34
Author(s):  
RP Jose ◽  
WA Aureo ◽  
CI Narido ◽  
TD Reyes Jr ◽  
MB Sarnowski
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Diversity Index ◽  
Population Trends ◽  
Species Richness And Diversity ◽  
Natural Park ◽  
Biodiversity Inventories ◽  
Baseline Information ◽  
High Diversity ◽  
Areas Of Protection

A comprehensive inventory of faunal biodiversity was conducted within three Key Biodiversity Areas of Central Visayas. Mt. Bandilaan Natural Park (MBNP), Balinsasayao Twin Lakes Natural Park (BTLNP), and Rajah Sikatuna Protected Landscape (RSPL). Three primary wildlife groups were surveyed: bats, birds and amphibians. Species diversity and population trends were then analyzed to assess areas of biodiversity importance. RSPL generally had the highest species richness and diversity index while MBNP consistently had the lowest. When pooled. The surveyed areas resulted in a high diversity index and rate of endemicity showing the importance of multiple areas of protection. These findings can be utilized to prioritize habitat protection as well as to serve as a baseline information for future biodiversity inventories. J. Biodivers. Conserv. Bioresour. Manag. 2020, 6(2): 27-34

Metagenomic profiling of gut microbiota in urban and rural rats: A comparative study

2021 ◽  
Author(s):  
Rafig GURBANOV ◽  
Uygar KABAOĞLU ◽  
Tuba YAĞCI
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Gut Microbiota ◽  
Bacterial Species ◽  
Rattus Rattus ◽  
Food Sources ◽  
Control Group ◽  
Laboratory Rats ◽  
Food Variety ◽  
Wild Rats

Abstract Mammals have a symbiotic relationship with various microorganisms called microbiota throughout their lives. These microorganisms are known to affect the host's physiology, health, and even mental balance. In the harbor of the densest and most diverse microorganisms in mammals, the curved structure of the intestines and their rich nutrient content are effective. The development of the gut microbiota is regulated by a complex interaction between host and environmental factors, including diet and lifestyle. Herein, it is aimed to elucidate the changes in the gut microbiota of rats living in urban and rural habitats. All taxonomic changes in the gut microbiota of wild rats belonging to Rattus rattus species caught from urban and rural areas of Western Anatolian (Bilecik province) were examined comparatively by 16S rRNA next-generation sequencing technique. Laboratory rats were used as a control group for comparison. Thus, 2000 different bacterial species were identified in gut microbiota. According to the Shannon and Simpsons values ​​calculated, laboratory rats showed the highest species diversity. When the similarities of microbiota profiles were compared with the principal coordinate analysis (PcoA), bacterial populations showed variability among different habitats. The comparison of species richness between the groups with the species rarefaction technique revealed higher species richness in all wild rats, especially in the rural habitat, compared to laboratory rats. Food sources were determined as the most important factor contributing to species richness and diversity. While the increased food variety boosted species richness, species diversity was increased due to the diminished food variety.

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