scholarly journals Landscape structure shapes tree seedlings’ diversity at multiple spatial scales in a fragmented tropical rainforest

2019 ◽  
Author(s):  
Sergio Nicasio-Arzeta ◽  
Isela E. Zermeño-Hernández ◽  
Susana Maza-Villalobos ◽  
Julieta Benítez-Malvido
Keyword(s):  
Functional Connectivity ◽  
Landscape Structure ◽  
Dominant Species ◽  
Secondary Forest ◽  
Spatial Scales ◽  
Landscape Configuration ◽  
Forest Patches ◽  
Management Actions ◽  
Β Diversity ◽  
Α Diversity

AbstractBiotic-dispersed tree seedling species are fundamental for the maintenance of the structure and function of forest patches in fragmented rainforest landscapes. Nonetheless, the effects of landscape structure and the spatial scale at which operates on seedling α- and β-diversity is unknown. Using a multi-scale approach, we assessed the relative effect of landscape composition (i.e., percentage of old-growth/secondary forest cover), configuration (i.e., aggregation/density of forest patches) and connectivity (i.e., structural and functional) on α- and β-diversity of biotic-dispersed seedlings in 16 forest patches in the Lacandona rainforest, Mexico. We assessed these effects at 13 spatial scales (from 300 to 1500 m radius, at 100 m intervals) for three α- and β-diversity orders (rare, common and dominant species). We found that patch aggregation increased species richness and reduced β-diversity of common and dominant species at similar spatial scales (500 to 600 m). Additionally, functional connectivity had a positive effect on the β-diversity of rare species in the 800 m spatial extent. These effects suggest that landscape configuration and functional connectivity sustain seedling diversity by preserving seed rain richness and the presence of large terrestrial herbivorous mammals. In contrast, the percentage of secondary forest matrix was detrimental for all α-diversity orders and the β-diversity of common and dominant species. Forthcoming conservation strategies should prevent deforestation, increase habitat amount and promote functional connectivity of forest-dependent fauna through matrix management actions.

scholarly journals Landscape structure shapes the diversity of tree seedlings at multiple spatial scales in a fragmented tropical rainforest

PLoS ONE ◽  
2021 ◽  
Vol 16 (7) ◽  
pp. e0253284
Author(s):  
Sergio Nicasio-Arzeta ◽  
Isela E. Zermeño-Hernández ◽  
Susana Maza-Villalobos ◽  
Julieta Benítez-Malvido
Keyword(s):  
Landscape Structure ◽  
Secondary Forest ◽  
Spatial Scales ◽  
Landscape Composition ◽  
Landscape Configuration ◽  
Secondary Forests ◽  
Tree Seedling ◽  
Forest Patches ◽  
Β Diversity ◽  
Α Diversity

The maintenance of seedling diversity of animal-dispersed tree species is fundamental for the structure and function of forest patches in fragmented tropical rainforests. Nonetheless, the effects of landscape structure at different spatial scales on α- and β-diversity of tree seedling communities are recently explored. Using a multi-scale approach, we assessed the relative effect of landscape composition and configuration on α- and β-diversity of animal-dispersed seedlings within 16 forest patches in the Lacandona rainforest, Mexico. We assessed these effects at 13 spatial scales (from 300 to 1500 m radius, at 100 m intervals) for three metrics of effective number of species considering α- and β-diversity. We found that α-diversity was largely affected by landscape composition and β-diversity by landscape configuration. On the one hand, the amount of secondary forest influenced α-diversity. Additionally, species richness increased in landscapes with highly aggregated forest patches. On the other hand, β-diversity was affected positively by forest fragmentation and negatively by the edge contrast of forest patches with the surrounding matrix. Our findings indicate that landscape configuration is a strong driver of seedling diversity in highly deforested rainforests. Promoting forest patches and secondary forests through payment for ecosystem services’ programs, favoring matrix quality within land-sharing schemes of smallholder agriculture and secondary forest management, and identifying restoration opportunities for assisted or unassisted natural regeneration are urgently needed for conservation of seedling diversity in human-modified tropical landscapes.

scholarly journals Variation of plant species richness at different spatial scales

2018 ◽  
Vol 11 ◽  
pp. 49-62 ◽  
Author(s):  
Khem Raj Bhattarai
Keyword(s):  
Species Richness ◽  
Spatial Scales ◽  
Local Scale ◽  
Explanatory Variables ◽  
Local Species Richness ◽  
Β Diversity ◽  
Historical Processes ◽  
Α Diversity ◽  
Local Species ◽  
Broad Scale

 It is now realized that the variation in species richness is influenced by spatial and temporal scales. Pattern and scale are a central focus in ecology and biogeography. The species richness relationship depends on the scale of study and their correlated factors. The broad objective of this review is to elucidate how different scales are correlated with different explanatory variables to generate patterns of species richness. Addressing the problem of scale has both fundamental and applied importance in understanding variation in species richness along gradients. The understanding of pattern, its causes, and consequences is central to our understanding of processes such as succession, community development, and the spread and persistence of species. According to the hierarchical theory of species diversity there are mainly three categories of scales: local, landscape and regional. The local species richness or α-diversity is the diversity of individual stands. The β-diversity or species change is turnover between two elevational bands or between two plots or two sites. The regional or γ-diversity is the total richness of whole mountains or study systems and it has a combined influence from α- and β-diversity. The local species richness is affected by both local-scale processes (e.g., internal interactions) and broad-scale processes (e.g., evolutionary). Different explanatory variables according to the scales of study are necessary to explain variation at different spatial scales. Local factors (e.g., disturbance, grazing and tree cover) have been used to detect variation at a local scale. Generally, topographical factors are used to detect variation in species richness at a landscape scale; whereas climate, water-energy dynamics and historical processes are used to detect variation at a regional scale. However, it is not easy to separate strictly one scale from other because there is no clear boundary between them. The study of the whole elevation gradient from tropical to alpine zone or long latitude is a broad-scale study. The intermediate scale is a study on a local mountain, which covers the subtropical to warm temperate zones. To explain patterns of species richness, a pluralistic body of hypotheses, which incorporates historical, biological and climatic factors, is needed. This is depicted by the strong relationship between climate, biological interactions, and historical processes in influencing variation in species richness at different spatial scales.Botanica Orientalis – Journal of Plant Science (2017) 11: 49–62

scholarly journals Nematode diversity patterns at different spatial scales in bathyal sediments of the Mediterranean Sea

2013 ◽  
Vol 10 (8) ◽  
pp. 5465-5479 ◽  
Author(s):  
S. Bianchelli ◽  
C. Gambi ◽  
M. Mea ◽  
A. Pusceddu ◽  
R. Danovaro
Keyword(s):  
Mediterranean Sea ◽  
Deep Sea ◽  
Spatial Scales ◽  
High Turnover ◽  
Trophic Conditions ◽  
Bathymetric Range ◽  
Β Diversity ◽  
Α Diversity ◽  
Nematode Diversity ◽  
The Mediterranean

Abstract. Understanding biodiversity patterns and how they are driven at different spatial scales is a crucial issue in ecological studies. This is particularly evident for the deep sea, the largest biome of the biosphere, where information on the scales of spatial variation is very scant. Here, we investigated deep-sea nematodes species richness, turnover and functional diversity, and life strategies at different spatial scales (from local to macro-regional) to identify the factors that shape regional (γ) and macro-regional (ε) deep-sea diversity. This study was conducted in several deep-sea habitats (canyons, open slopes, deep-water corals, and bathyal plains) over > 2000 km across the whole Mediterranean Basin, at a bathymetric range comprised between ca. 600 and 1300 m. Our results indicate that the patterns of local (α) diversity across the deep Mediterranean follow the gradients of the trophic conditions, which decrease from the western to the eastern basins. For all of the sites and habitats, the α diversity is generally low. Conversely, the turnover diversity changes significantly among habitats (β diversity) and between regions (δ diversity), showing values of dissimilarity (based on species presence/absence matrixes) between 59 and 90% for β diversity and between 81 and 89% for δ diversity. This suggests that patterns and values of γ and ε diversities in the deep Mediterranean Sea are related to turnover diversity among habitats and between regions (β and δ diversities), rather than to the local biodiversity (α diversity). These results indicate also that the differences in β and δ diversities are even more important than those in α diversity for the comprehension of the drivers of biodiversity in the deep Mediterranean Sea. We conclude that the presence of different habitats and gradients in environmental conditions, by promoting a high turnover diversity across the Mediterranean Sea, may play a crucial role in the levels of γ diversity of deep-sea nematodes.

scholarly journals Macrofauna communities across a seascape of seagrass meadows: environmental drivers, biodiversity patterns and conservation implications

2021 ◽  
Author(s):  
Iván F. Rodil ◽  
Andrew M. Lohrer ◽  
Karl M. Attard ◽  
Judi E. Hewitt ◽  
Simon F. Thrush ◽  
...  
Keyword(s):  
Habitat Management ◽  
Plant Biomass ◽  
Spatial Scales ◽  
Environmental Drivers ◽  
Kelp Forests ◽  
Natural Occurrence ◽  
Seagrass Meadows ◽  
Β Diversity ◽  
Α Diversity ◽  
Macrofauna Communities

AbstractSimilar to other coastal biogenic habitats (e.g. tidal marshes, kelp forests, mangroves and coral reefs), a key function of seagrass meadows is the enhancement of biodiversity. Variability at multiple spatial scales is a driver of biodiversity, but our understanding of the response of macrofauna communities to variability of seagrass meadows is limited. We examined the macrofauna community structure (abundance and biomass) and diversity patterns (α- and β-diversity) across a seascape gradient of eleven seagrass meadows differing in the number, composition and density of plant species. The variability of the macrobenthic communities was regulated by a combination of sedimentary (mainly for the infauna) and macrophyte (mainly for the epifauna) predictors. We demonstrate that the natural occurrence of drifting algae trapped in the aboveground complexity of the meadows benefits seagrass macrofauna. Seagrass-associated macrofauna showed a clear increase in abundance and α-diversity metrics with increasing habitat complexity attributes (i.e. shoot density, plant biomass and canopy height). Furthermore, partitioning of β-diversity (i.e. the variation of species composition between sites) implied the replacement of some species by others between sites (i.e. spatial turnover) instead of a process of species loss (or gain) from site to site (i.e. nestedness). Therefore, the enhancement of macrofauna diversity across an increasing gradient of seagrass complexity, and the dominance of the turnover component suggest that devoting conservation efforts on many different types of meadows, including the less diverse, should be a priority for coastal habitat-management.

Landscape Configuration Influences Species Occupancy Over Multiple Spatial Scales: A Case Study On Tawny Owl

2021 ◽  
Author(s):  
Jakob Wildraut ◽  
Marco Basile
Keyword(s):  
Spatial Scale ◽  
Spatial Scales ◽  
Coniferous Forest ◽  
Landscape Configuration ◽  
Species Occurrence ◽  
Forest Patches ◽  
Tawny Owl ◽  
Generalist Species ◽  
Multiple Spatial Scales ◽  
Time Substitution

ABSTRACT Landscape configuration can influence the distribution of species across multiple spatial scales. The primary factors related to this process are connectivity, the size and position of habitat patches, and edge effects. These factors together determine the overall fragmentation of a landscape, which in turn influences species occurrence. Although some species show a negative response to fragmentation, others benefit from it. Potential effects may act over multiple spatial scales, possibly with contrasting effects on species occurrence. We chose the Tawny Owl (Strix aluco), a ubiquitous and generalist species, to study the influence of fragmentation on species occurrence and to identify relevant landscape metrics, using multi-scale hierarchical modelling. Between 2016 and 2018, we recorded Tawny Owls on 64 sampling sites located in a forested landscape. We used a space-for-time substitution in the framework of occupancy modelling to assess Tawny Owl responses to landscape fragmentation. We found that the Tawny Owl is widespread in the study area. Its distribution across the landscape (larger spatial scale) was related to a heterogeneous configuration of forest patches, while high connectivity of coniferous forest influenced its occurrence at a smaller spatial scale (sites). Overall, the Tawny Owl prefers landscapes with well-connected forest patches and an uneven patch distribution in the surrounding area.

scholarly journals On the importance of spatial scales on beta diversity of coral assemblages: a study from Venezuelan coral reefs

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9082
Author(s):  
Emy Miyazawa ◽  
Luis M. Montilla ◽  
Esteban Alejandro Agudo-Adriani ◽  
Alfredo Ascanio ◽  
Gloria Mariño-Briceño ◽  
...  
Keyword(s):  
Coral Reefs ◽  
Beta Diversity ◽  
Species Turnover ◽  
Spatial Scales ◽  
Assemblage Structure ◽  
Caribbean Region ◽  
Management Actions ◽  
Β Diversity ◽  
Coral Assemblage ◽  
The Caribbean

Estimating variability across spatial scales has been a major issue in ecology because the description of patterns in space is extremely valuable to propose specific hypotheses to unveil key processes behind these patterns. This paper aims to estimate the variability of the coral assemblage structure at different spatial scales in order to determine which scales explain the largest variability on β-diversity. For this, a fully-nested design including a series of hierarchical-random factors encompassing three spatial scales: (1) regions, (2) localities and (3) reefs sites across the Venezuelan territory. The variability among spatial scales was tested with a permutation-based analysis of variance (Permanova) based on Bray-Curtis index. Dispersion in species presence/absence across scales (i.e., β-diversity) was tested with a PermDisp analysis based on Jaccard’s index. We found the highest variability in the coral assemblage structure between sites within localities (Pseudo-F = 5.34; p-value = 0.001, CV = 35.10%). We also found that longitude (Canonical corr = 0.867, p = 0.001) is a better predictor of the coral assemblage structure in Venezuela, than latitude (Canonical corr = 0.552, p = 0.021). Largest changes in β-diversity of corals occurred within sites (F = 2.764, df1= 35, df2 = 107, p = 0.045) and within localities (F = 4.438, df1= 6, df2 = 29, p = 0.026). Our results suggest that processes operating at spatial scales of hundreds of meters and hundreds of kilometers might both be critical to shape coral assemblage structure in Venezuela, whereas smaller scales (i.e., hundreds of meters) showed to be highly- important for the species turnover component of β-diversity. This result highlights the importance of creating scale-adapted management actions in Venezuela and likely across the Caribbean region.

scholarly journals Turnover diversity drives large-scale biodiversity patterns in bathyal sediments of the Mediterranean Sea

2012 ◽  
Vol 9 (12) ◽  
pp. 17819-17853 ◽  
Author(s):  
S. Bianchelli ◽  
C. Gambi ◽  
M. Mea ◽  
A. Pusceddu ◽  
R. Danovaro
Keyword(s):  
Mediterranean Sea ◽  
Deep Sea ◽  
Large Scale ◽  
Spatial Scales ◽  
High Turnover ◽  
Trophic Conditions ◽  
Biodiversity Patterns ◽  
Β Diversity ◽  
Α Diversity ◽  
Nematode Diversity

Abstract. Understanding biodiversity patterns and how they are driven at different spatial scales is a crucial issue in ecological studies. This is particularly evident for the deep sea, the largest biome of the biosphere, where information on the scales of spatial variation is very scant. Here, we investigated deep-sea nematodes species richness, turnover and functional diversity, and life strategies at different spatial scales (from local to macro-regional) to identify the factors that shape regional (γ) and macro-regional (ϵ) deep-sea diversity. This study was conducted in several deep-sea habitats (canyons, open slopes, deep-water corals, and bathyal plains) over > 2000 km across the whole Mediterranean basin, at a fixed depth of ca. 1000 m. Our results indicate that the patterns of local (α) diversity across the deep Mediterranean follow the gradients of the trophic conditions, which decrease from the Western to the Eastern basins. For all of the sites and habitats, the α-diversity is generally low. Conversely, the turnover diversity changes significantly among habitats (β-diversity) and between regions (δ-diversity), showing values of dissimilarity (based on species presence/absence) between 59% and 90% for β-diversity and between 81% and 89% for δ-diversity. This suggests that patterns and values of regional (γ) and macro-regional (ϵ) diversity in the deep Mediterranean Sea are related to turnover diversity among habitats and between regions (β- and δ-diversity), rather than to the local biodiversity (α-diversity). These results indicate that the differences in β-diversity and δ-diversity are even more important than those for the α-diversity for the understanding of the drivers of biodiversity in the deep Mediterranean Sea. These data also allow us to conclude that habitat heterogeneity (and type) and gradients in environmental conditions, by promoting a high turnover diversity across the deep Mediterranean Sea, are crucial players for the nematode diversity levels.

Patterns in diversity and composition of the microbenthos of subarctic intertidal beaches with different morphodynamics

2020 ◽  
Vol 648 ◽  
pp. 19-38
Author(s):  
AI Azovsky ◽  
YA Mazei ◽  
MA Saburova ◽  
PV Sapozhnikov
Keyword(s):  
Species Abundance ◽  
Abundance Ratio ◽  
Wave Action ◽  
Coarse Grained ◽  
Sediment Properties ◽  
Β Diversity ◽  
Α Diversity ◽  
Wide Range ◽  
Similar Mode ◽  
Abundance And Diversity

Diversity and composition of benthic diatom algae and ciliates were studied at several beaches along the White and Barents seas: from highly exposed, reflective beaches with coarse-grained sands to sheltered, dissipative silty-sandy flats. For diatoms, the epipelic to epipsammic species abundance ratio was significantly correlated with the beach index and mean particle size, while neither α-diversity measures nor mean cell length were related to beach properties. In contrast, most of the characteristics of ciliate assemblages (diversity, total abundance and biomass, mean individual weight and percentage of karyorelictids) demonstrated a strong correlation to beach properties, remaining low at exposed beaches but increasing sharply in more sheltered conditions. β-diversity did not correlate with beach properties for either diatoms or ciliates. We suggest that wave action and sediment properties are the main drivers controlling the diversity and composition of the intertidal microbenthos. Diatoms and ciliates, however, demonstrated divergent response to these factors. Epipelic and epipsammic diatoms exhibited 2 different strategies to adapt to their environments and therefore were complementarily distributed along the environmental gradient and compensated for each other in diversity. Most ciliates demonstrated a similar mode of habitat selection but differed in their degree of tolerance. Euryporal (including mesoporal) species were relatively tolerant to wave action and therefore occurred under a wide range of beach conditions, though their abundance and diversity were highest in fine, relatively stable sediments on sheltered beaches, whereas the specific interstitial (i.e. genuine microporal) species were mostly restricted to only these habitats.

scholarly journals Complex community responses underpin biodiversity change following invasion

2021 ◽  
Author(s):  
Alessandra R. Kortz ◽  
Anne E. Magurran
Keyword(s):  
Invasive Species ◽  
Species Richness ◽  
Spatial Scales ◽  
Species Abundance ◽  
Ecological Systems ◽  
Multi Scale ◽  
Mechanistic Approach ◽  
Α Diversity ◽  
Biodiversity Change ◽  
Insight Into

AbstractHow do invasive species change native biodiversity? One reason why this long-standing question remains challenging to answer could be because the main focus of the invasion literature has been on shifts in species richness (a measure of α-diversity). As the underlying components of community structure—intraspecific aggregation, interspecific density and the species abundance distribution (SAD)—are potentially impacted in different ways during invasion, trends in species richness provide only limited insight into the mechanisms leading to biodiversity change. In addition, these impacts can be manifested in distinct ways at different spatial scales. Here we take advantage of the new Measurement of Biodiversity (MoB) framework to reanalyse data collected in an invasion front in the Brazilian Cerrado biodiversity hotspot. We show that, by using the MoB multi-scale approach, we are able to link reductions in species richness in invaded sites to restructuring in the SAD. This restructuring takes the form of lower evenness in sites invaded by pines relative to sites without pines. Shifts in aggregation also occur. There is a clear signature of spatial scale in biodiversity change linked to the presence of an invasive species. These results demonstrate how the MoB approach can play an important role in helping invasion ecologists, field biologists and conservation managers move towards a more mechanistic approach to detecting and interpreting changes in ecological systems following invasion.

Gut microbiome of the emerald ash borer, Agrilus planipennis Fairmaire, and its relationship with insect population density

2020 ◽  
Vol 96 (8) ◽  
Author(s):  
Judith Mogouong ◽  
Philippe Constant ◽  
Robert Lavallée ◽  
Claude Guertin
Keyword(s):  
Population Density ◽  
Gut Microbiome ◽  
Emerald Ash Borer ◽  
Agrilus Planipennis ◽  
Economic Damage ◽  
Taxonomic Structure ◽  
Rrna Gene ◽  
Local Conditions ◽  
Β Diversity ◽  
Α Diversity

ABSTRACT The gut microbial communities of beetles play crucial roles in their adaptive capacities. Environmental factors such as temperature or nutrition naturally affect the insect microbiome, but a shift in local conditions like the population density on a host tree could also lead to changes in the microbiota. The emerald ash borer (EAB), Agrilus planipennis Fairmaire, is an exotic wood borer that causes environmental and economic damage to ash trees in North America. This study aimed to describe the taxonomic structure of the EAB gut microbiome and explore its potential relationship with borer population size. The number of EAB adults collected per tree through a 75 km transect from an epicenter allowed the creation of distinct classes of population density. The Gammaproteobacteria and Ascomycota predominated in bacterial and fungal communities respectively, as determined by sequencing of the bacterial 16S rRNA gene and the fungal internal transcribed spacer ITS2. Species richness and diversity of the bacterial community showed significant dependence on population density. Moreover, α-diversity and β-diversity analysis revealed some indicator amplicon sequence variants suggesting that the plasticity of the gut microbiome could be related to the EAB population density in host trees.

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