scholarly journals Transcription of multiple cell wall protein-encoding genes inSaccharomyces cerevisiaeis differentially regulated during the cell cycle

1998 ◽  
Vol 161 (2) ◽  
pp. 345-349 ◽  
Author(s):  
L.Heleen P Caro ◽  
Gertien J Smits ◽  
Piet Egmond ◽  
John W Chapman ◽  
Frans M Klis
2014 ◽  
Vol 8 (S4) ◽  
Author(s):  
Tassia Nati ◽  
Fernanda Bravim ◽  
Jimmy Soares ◽  
Mainã Mantovanelli Mota ◽  
James Riley Broach ◽  
...  

2012 ◽  
Vol 169 (6) ◽  
pp. 586-595 ◽  
Author(s):  
Jonathan D. Neubauer ◽  
Edward C. Lulai ◽  
Asunta L. Thompson ◽  
Jeffrey C. Suttle ◽  
Melvin D. Bolton

Author(s):  
Shilpika Pandey ◽  
Amrita Singh ◽  
Guangli Yang ◽  
Felipe B. d’Andrea ◽  
Xiuju Jiang ◽  
...  

Tuberculosis (TB), caused by Mycobacterium tuberculosis , was the leading cause of death from an infectious disease before COVID, yet the in vivo essentiality and function of many of the protein-encoding genes expressed by M. tuberculosis are not known. We biochemically characterize M. tuberculosis ’s phosphopantetheinyl hydrolase, PptH, a protein unique to mycobacteria that removes an essential posttranslational modification on proteins involved in synthesis of lipids important for the bacterium’s cell wall and virulence.


1999 ◽  
Vol 67 (11) ◽  
pp. 6157-6160 ◽  
Author(s):  
Charles F. Thomas ◽  
Edward B. Leof ◽  
Andrew H. Limper

ABSTRACT Pneumocystis carinii is an ascomycete phylogenetically related to Schizosaccharomyces pombe. Little is known about gene regulation in P. carinii. The removal of introns from pre-mRNA requires spliceosomal recognition of the intron-exon boundary. In S. pombe and higher eukaryotes, this boundary and a branch site within the intron are conserved. We recently demonstrated that P. carinii cdc2 cDNA can complement S. pombe containing conditional mutations of cdc2, an essential gene involved in cell cycle regulation. We next tested whether P. carinii genomic cdc2 (with six introns) could also complement S. pombe cdc2 mutants and found genomic sequences incapable of this activity. Reverse transcriptase PCR confirmed the inability of the S. pombe cdc2 mutants to splice the P. carinii genomiccdc2. Analysis of 83 introns from 19 P. cariniiprotein-encoding genes demonstrated that the sequence GTWWDW functions as a donor consensus in P. carinii, whereas YAG serves as an acceptor consensus. These sequences are similar in S. pombe; however, a branch site sequence was not found in theP. carinii genes studied.


Open Biology ◽  
2013 ◽  
Vol 3 (5) ◽  
pp. 130053 ◽  
Author(s):  
Jacqueline Hayles ◽  
Valerie Wood ◽  
Linda Jeffery ◽  
Kwang-Lae Hoe ◽  
Dong-Uk Kim ◽  
...  

To identify near complete sets of genes required for the cell cycle and cell shape, we have visually screened a genome-wide gene deletion library of 4843 fission yeast deletion mutants (95.7% of total protein encoding genes) for their effects on these processes. A total of 513 genes have been identified as being required for cell cycle progression, 276 of which have not been previously described as cell cycle genes. Deletions of a further 333 genes lead to specific alterations in cell shape and another 524 genes result in generally misshapen cells. Here, we provide the first eukaryotic resource of gene deletions, which describes a near genome-wide set of genes required for the cell cycle and cell shape.


1998 ◽  
Vol 64 (10) ◽  
pp. 4047-4052 ◽  
Author(s):  
S. K. Dielbandhoesing ◽  
H. Zhang ◽  
L. H. P. Caro ◽  
J. M. van der Vaart ◽  
F. M. Klis ◽  
...  

ABSTRACT The cell wall of a yeast cell forms a barrier for various proteinaceous and nonproteinaceous molecules. Nisin, a small polypeptide and a well-known preservative active against gram-positive bacteria, was tested with wild-type Saccharomyces cerevisiae. This peptide had no effect on intact cells. However, removal of the cell wall facilitated access of nisin to the membrane and led to cell rupture. The roles of individual components of the cell wall in protection against nisin were studied by using synchronized cultures. Variation in nisin sensitivity was observed during the cell cycle. In the S phase, which is the phase in the cell cycle in which the permeability of the yeast wall to fluorescein isothiocyanate dextrans is highest, the cells were most sensitive to nisin. In contrast, the cells were most resistant to nisin after a peak in expression of the mRNA of cell wall protein 2 (Cwp2p), which coincided with the G2 phase of the cell cycle. A mutant lacking Cwp2p has been shown to be more sensitive to cell wall-interfering compounds and Zymolyase (J. M. Van der Vaart, L. H. Caro, J. W. Chapman, F. M. Klis, and C. T. Verrips, J. Bacteriol. 177:3104–3110, 1995). Here we show that of the single cell wall protein knockouts, a Cwp2p-deficient mutant is most sensitive to nisin. A mutant with a double knockout of Cwp1p and Cwp2p is hypersensitive to the peptide. Finally, in yeast mutants with impaired cell wall structure, expression of both CWP1 and CWP2 was modified. We concluded that Cwp2p plays a prominent role in protection of cells against antimicrobial peptides, such as nisin, and that Cwp1p and Cwp2p play a key role in the formation of a normal cell wall.


2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Robert M. Cleverley ◽  
Zoe J. Rutter ◽  
Jeanine Rismondo ◽  
Federico Corona ◽  
Ho-Ching Tiffany Tsui ◽  
...  

2006 ◽  
Vol 188 (3) ◽  
pp. 1120-1133 ◽  
Author(s):  
Fionnuala McAleese ◽  
Shang Wei Wu ◽  
Krzysztof Sieradzki ◽  
Paul Dunman ◽  
Ellen Murphy ◽  
...  

ABSTRACT Custom-designed gene chips (Affymetrix) were used to determine genetic relatedness and gene expression profiles in Staphylococcus aureus isolates with increasing MICs of vancomycin that were recovered over a period of several weeks from the blood and heart valve of a patient undergoing extensive vancomycin therapy. The isolates were found to be isogenic as determined by the GeneChip based genotyping approach and thus represented a unique opportunity to study changes in gene expression that may contribute to the vancomycin resistance phenotype. No differences in gene expression were detected between the parent strain, JH1, and JH15, isolated from the nares of a patient contact. Few expression changes were observed between blood and heart valve isolates with identical vancomycin MICs. A large number of genes had altered expression in the late stage JH9 isolate (MIC = 8 μg/ml) compared to JH1 (MIC = 1 μg/ml). Most genes with altered expression were involved in housekeeping functions or cell wall biosynthesis and regulation. The sortase-encoding genes, srtA and srtB, as well as several surface protein-encoding genes were downregulated in JH9. Two hypothetical protein-encoding genes, SAS016 and SA2343, were dramatically overexpressed in JH9. Interestingly, 27 of the genes with altered expression in JH9 grown in drug-free medium were found to be also overexpressed when the parental strain JH1 was briefly exposed to inhibitory concentrations of vancomycin, and more than half (17 of 27) of the genes with altered expression belonged to determinants that were proposed to form part of a general cell wall stress stimulon (S. Utaida et al., Microbiology 149:2719-2732, 2003).


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