A Numerical Method for Coupling Nano-Scale Molecular Binding With Mesoscale Cellular Deformation

Author(s):  
Vijay K. Gupta ◽  
Charles D. Eggleton

Cell adhesion plays a pivotal role in diverse biological processes, including inflammation and thrombosis. Changes in cell adhesion can be the defining event in a wide range of diseases, including cancer, osteoporosis, atherosclerosis, and arthritis. Cells are exposed constantly to hemodynamic/hydrodynamic forces and the balance between the dispersive hydrodynamic forces and the adhesive forces generated by the interactions of membrane-bound receptors and their ligands determines cell adhesion. The ultimate objective of our work is to develop software that can simulate the adhesion of cells colliding under hydrodynamic forces that can be used to investigate the complex interplay among the physical mechanisms and scales involved in the adhesion process. Here, we review the development of a multi-scale model combining Monte-Carlo models of molecular binding with the Immersed Boundary Method for cellular-hydrodynamic interactions. This model predicted for the first time that the rolling of more compliant cells is relatively smoother and slower compared to cells with stiffer membranes, due to increased cell-substrate contact area. At the molecular level, we show that the average number of bonds per cell as well as per single microvillus decreases with increasing membrane stiffness. The numerical model was modified to compare the effects of different kinetic models of molecular binding on cell rolling. Simulations predict that the catch-slip bond behavior and to a lesser extent bulk cell deformation are responsible for the shear threshold phenomenon. In bulk flow, shear rate has been shown to critically affect the kinetics and receptor specificity of cell-cell interactions. We are currently simulating the adhesion of two PMN cells in quiescent conditions and the exposing the cells to external pulling forces and shear flow in order to investigate the behavior of the nano-scale molecular bonds to forces applied at the cellular scale.

Author(s):  
Vijay K. Gupta ◽  
Charles D. Eggleton

Cell adhesion plays a pivotal role in diverse biological processes, including inflammation, tumor metastasis, arteriosclerosis, and thrombosis. Changes in cell adhesion can be the defining event in a wide range of diseases, including cancer, atherosclerosis, osteoporosis, and arthritis. Cells are exposed constantly to hemodynamic/hydrodynamic forces and the balance between the dispersive hydrodynamic forces and the adhesive forces generated by the interactions of membrane-bound receptors and their ligands determines cell adhesion. Therefore to develop novel tissue engineering based approaches for therapeutic interventions in thrombotic disorders, inflammatory, and a wide range of other diseases, it is crucial to understand the complex interplay among blood flow, cell adhesion, and vascular biology at the molecular level. In response to tissue injury or infection, polymorphonuclear (PMN) leukocytes are recruited from the bloodstream to the site of inflammation through interactions between cell surface receptors and complementary ligands expressed on the surface of the endothelium [1]. PMN-PMN interactions also contribute to the process of recruitment. It has been shown that PMNs rolling on activated endothelium cells can mediate secondary capture of PMNs flowing in the free blood stream through homotypic interactions [2]. This is mediated by L-selectin (ligand) binding to PSGL-1 (receptor) between a free-stream PMN and one already adherent to the endothelium cells [3]. Both PSGL-1 and L-selectin adhesion molecules are concentrated on tips of PMN microvilli [4]. Homotypic PMN aggregation in vivo or in vitro is supported by multiple L-selectin–PSGL-1 bondings between pairs of microvilli. The ultimate objective of our work is to develop software that can simulate the adhesion of cells colliding under hydrodynamic forces that can be used to investigate the complex interplay among the physical mechanisms and scales involved in the adhesion process. However, cell-cell adhesion is a complex phenomenon involving the interplay of bond kinetics and hydrodynamics. Hence, as a first step we recently developed a 3-D computational model based on the Immersed Boundary Method to simulate adhesion-detachment of two PMN cells in quiescent conditions and the exposing the cells to external pulling forces and shear flow in order to investigate the behavior of the nano-scale molecular bonds to forces applied at the cellular scale [5]. Our simulations predicted that the total number of bonds formed is dependent on the number of available receptors (PSGL-1) when ligands (L-selectin) are in excess, while the excess amount of ligands controls the rate of bond formation [5]. Increasing equilibrium bond length causes an increased intercellular contact area hence results in a higher number of receptor-ligand bonds [5]. Off-rates control the average number of bonds by modulating bond lifetimes while On-rate constants determine the rate of bond formation [5]. An applied external pulling force leads to time-dependent on- and off-rates and causes bond rupture [5]. It was shown that the time required for bond rupture in response to an applied external force is inversely proportional to the applied external force and decreases with increasing offrate [5]. Fig. 1 shows the time evolution of the total number of bonds formed for various values of NRmv (number of receptor) and NLmv (number of ligand). As expected, the total number of bonds formed at equilibrium is dependent on NRmv when NLmv is in excess. In this particular case study since two pairs (or four) microvilli each with NRmv are involved in adhesion hence the equilibrium bond number is approximately 4NRmv. It is noticed that for NRmv = 50, as we vary NLmv the mean value of the total number of bonds at equilibrium does not change appreciably. However, it can be noticed from Fig. 1 that for NRmv = 50, as the excess number of ligands (NLmv) increases there is a slight increase in the rate of bond formation due to the increase in probability of bond formation. Having developed confidence in the ability of the numerical method to simulate the adhesion of two cells that can form up to 200 bonds, we apply the method to study the effect of shear rate on the detachment of two cells. In particular, we first would like to establish the minimum shear rate needed for the two cells to detach for a given number of bonds between them. Fig. 2 shows the variation of force per bond at no rupture with number of bonds for various shear rates indicated. It is seen that at a given shear rate as the number of bonds increases the force per bond at no rupture decreases. This is attributed to the fact that force caused by shear flow is shared equally among the existing bonds. Further, it is seen that a given number of bonds as the shear rate increases the force per bond at no rupture increases. This is due to the fact that at a given number of bonds between the cells as we increase the shear rate the force caused by the flow increases hence the force per bond increases. We further notice that at shear rate = 3000 s−1 cells attached either by a single bond or by two bonds detach while they don’t for higher (> 2) number of bonds. This clearly demonstrate that there is a minimum shear rate needed to detach cells adhered by a given number of bonds. The higher the number of bonds, the higher the minimum shear rate for complete detachment of cells. For example, from Fig. 2 is it clear that for the cells adhered by two and five bonds the minimum shear rate needed for complete detachment of these two cells are 3000 s−1 and 6000 s−1, respectively.


Author(s):  
Aditya Das ◽  
Rakesh Murthy

One of the major challenges in commercializable micro-nano systems development is the high cost and turnaround that are incurred through multiple product-optimization iterations and expensive fabrication processes for specific systems. Development of complex and heterogeneous micro-nano systems, that are only possible through assembly and not by conventional surface machining approaches, are further impeded by lack of standard design rules and off-the-shelf robotic manipulation systems. Dedicated hardware and system specific component designs, although possible, are not commercially viable for addressing the wide range of opportunities that exists in the prevailing micro-nano domain. In this paper, we present an alternative and holistic top-down approach for micro-nano manufacturing using modular part designs and flexible assembly systems. We incorporate, seamlessly, multiple novel algorithms related to microrobotics and scaling of physics, obtained both analytically as well as experimentally; in order to predict, track and control the uncertainty propagation in a typical manufacturing process, in micro-nano scale, throughout production steps including design, machining, setup, assembly, testing etc. We demonstrate, through multiple examples, the implementation of the proposed framework in micro-nano scale manufacturing.


2018 ◽  
Vol 24 (3) ◽  
pp. 278-287 ◽  
Author(s):  
Shengnan Zhao ◽  
Minglu Liang ◽  
Yilong Wang ◽  
Ji Hu ◽  
Yi Zhong ◽  
...  

The vascular endothelium is a continuous layer of flat polygonal cells that are in direct contact with the blood and participate in responses to inflammation. Chrysin is a flavonoid compound extracted from plants of the genus Asteraceae with a wide range of pharmacological activities and physiological activities. Here, we studied the effects of chrysin on the regulation of the proadhesion and pro-inflammatory phenotypes of the endothelium both in vitro and in vivo. Our results revealed that chrysin strongly inhibited Tohoku Hospital Pediatrics-1 (THP-1) cell adhesion to primary human umbilical vein endothelial cells and concentration-dependently attenuated interleukin 1β-induced increases in intercellular adhesion molecule 1 (ICAM-1), vascular cell adhesion molecule 1 (VCAM-1), and E-selectin messenger RNA levels and ICAM-1 and VCAM-1 protein levels. Previous studies reported that nuclear factor κB (NF-κB) is important in the inflammatory response in endothelial cells, particularly in regulating adhesion molecules, and our data shed light on the mechanisms whereby chrysin suppressed endothelial inflammation via the NF-κB signaling pathway. In addition, our in vivo findings demonstrated the effects of chrysin in the permeability and inflammatory responses of the endothelium to inflammatory injury. Taken together, we conclude that chrysin inhibits endothelial inflammation both in vitro and in vivo, which could be mainly due to its inhibition of NF-κB signaling activation. In conclusion, chrysin may serve as a promising therapeutic candidate for inflammatory vascular diseases.


2021 ◽  
Author(s):  
Oguzhan Murat ◽  
Budimir Rosic ◽  
Koichi Tanimoto ◽  
Ryo Egami

Abstract Due to increase in the power generation from renewable sources, steam and gas turbines will be required to adapt for more flexible operations with frequent start-ups and shut-downs to provide load levelling capacity. During shut-down regimes, mixed convection takes place with natural convection dominance depending on the operating conditions in turbine cavities. Buoyant flows inside the turbine that are responsible for non-uniform cooling leading to thermal stresses and compromise clearances directly limits the operational flexibility. Computational fluid dynamics (CFD) tools are required to predict the flow field during these regimes since direct measurements are extremely difficult to conduct due to the harsh operating conditions. Natural convection with the presence of cross-flow -mixed convection has not been extensively studied to provide detailed measurements. Since the literature lacks of research on such flows with real engine representative operating conditions for CFD validation, the confidence in numerical predictions is rather inadequate. This paper presents a novel experimental facility that has been designed and commissioned to perform very accurate unsteady temperature and flow field measurements in a simplified turbine casing geometry. The facility is capable of reproducing a wide range of Richardson, Grashof and Reynolds numbers which are representative of engine realistic operating conditions. In addition, high fidelity, wall resolved LES with dynamic Smagorinsky subgrid scale model has been performed. The flow field as well as heat transfer characteristics have been accurately captured with LES. Lastly, inadequacy of RANS for mixed type of flows has been highlighted.


Author(s):  
Mokhtar Taffar ◽  
Serge Miguet

In this chapter, we tackle in the same process the problems of face detection and gender classification, where the faces present a wide range of the intra-class appearance are taken from arbitrary viewpoints. We try to develop complete probabilistic model to represent and learn appearance of facial objects in both shape and geometry with respect to a landmark in the image, and then to be able to predict presence and position of the appearance of the studied object class in new scene. After have predicted the facial appearance and the geometry of invariants, geometric hierarchical clustering combines different prediction of positions of face invariant. Then, the algorithm of cluster selection with a best appearance localizes faces in the image. Using a probabilistic classification, each facial feature retained in the detection step will be weighted by a probability to be male or female. This set of features contributes to determine the gender associated to a detected face. This model has a good performance in presence of viewpoint changes and a large appearance variability of faces.


2019 ◽  
Vol 874 ◽  
pp. 1057-1095 ◽  
Author(s):  
Artem N. Nuriev ◽  
Airat M. Kamalutdinov ◽  
Andrey G. Egorov

The paper is devoted to the problem of harmonic oscillations of thin plates in a viscous incompressible fluid. The two-dimensional flows caused by the plate oscillations and their hydrodynamic influence on the plates are studied. The fluid motion is described by the non-stationary Navier–Stokes equations, which are solved numerically on the basis of the finite volume method. The simulation is carried out for plates with different thicknesses and shapes of edges in a wide range of control parameters of the oscillatory process: dimensionless frequency and amplitude of oscillations. For the first time in the framework of one model all two-dimensional flow regimes, which were found earlier in experimental studies, are described. Two new flow regimes emerging along the stability boundaries of symmetric flow regimes are localized. The map of flow regimes in the frequency–amplitude plane is constructed. The analysis of the hydrodynamic influence of flows on the plates allow us to establish new effects associated with the influence of the shape of the plates on the drag and inertia forces. Due to these effects, the values of hydrodynamic forces can differ by 90 % at the same parameters of the oscillation. The lower and upper estimates of hydrodynamic forces obtained in the work have a good agreement with the experimental data presented in the literature.


Author(s):  
Toma´sˇ Gedeon ◽  
Jeff J. Heys ◽  
B. C. Knott ◽  
Jonas Mulder-Rosi

Many insects are able to sense their surrounding fluid environment through induced motion of their filiform hairs. The mechanism by which the insect can sense a wide range of input signals using the canopy of filiform hairs of different length and orientation is of great interest. Most of the previous filiform hair models have focused on a single, rigid hair in an idealized air field. We have developed [1] a model for a canopy of filiform hairs that are mechanically coupled to the surrounding air. The model equations are based on the penalty immersed boundary method. The key difference between the penalty immersed boundary method and the traditional immersed boundary method is the addition of forces to account for density differences between the immersed solid (the filiform hairs) and the surrounding fluid (air). In this work we validate the model by comparing the model predictions to experimental results on cricket Acheta domestica cercal system.


Author(s):  
B. Simoens ◽  
M. H. Lefebvre ◽  
J. K. Asahina ◽  
F. Minami ◽  
R. E. Nickell

Detonation chambers (either mobile or fixed) are used worldwide for a wide range of applications. At present, a 1/7 scale model of a 1 ton detonation chamber is available for extended testing in Belgium. The chamber is a single wall cylindrical vessel with semi-elliptical ends. Each time an explosive charge is fired in the vessel, that vessel is submitted to a number of deformation cycles. A series of strain gages measure the deformation of the vessel walls. Experimental peak strains and vibration frequency can be compared to predicted values based on simple formulas. Measured values are reasonably close to the estimated values. The influence of the shape of the charge is studied. The shape has an important influence on the chamber response. For a fixed charge mass, a spherical charge causes less deformation than a cylindrical charge and is therefore advantageous from a fatigue point of view.


Author(s):  
Taichi Matsuoka ◽  
Katsuaki Sunakoda ◽  
Kazuhiko Hiramoto ◽  
Issei Yamazaki ◽  
Akira Fukukita ◽  
...  

In a previous paper the authors proposed a semi-active vibration control device (VCD) that generates power. The device utilizes a ball screw, and has inertial and damping forces. The damping coefficient is adjusted by altering resistance at the terminal of the power generator. A small-scale VCD was manufactured for experimental testing. Frequency responses of a small-scale spring mass structure were measured in order to confirm the effects of vibration suppression within a wide range of frequencies. In this paper, as the next step, vibration tests using a benchmark structure with an installed VCD that has a 30 kN capacity are carried out at the National Center for Research on Earthquake Engineering (NCREE) in Taiwan. The benchmark structure has three stories with a 3 m height and a mass of 6 tons at each floor level for a total height and weight of 9 m and 18 tons, respectively. The VCDs are installed between adjacent floors with steel chevron braces. A simple control law that is based on a minimized Lyapunov function and employs bang-bang operation is used as a variable current controller instead of the modifying the resistance level of the VCD. Scaled earthquake motions including the Imperial Valley El Centro north-south component that is normalized to be a peak level of 0.5 m/s2, are applied to the base of the steel framed structure in the horizontal direction by a shaking table. Experimental responses of each floor for the uncontrolled and controlled cases are compared with analytical responses, and effects of vibration suppression for the large-scale model are discussed quantitatively.


2019 ◽  
Vol 26 (12) ◽  
pp. 1510-1518 ◽  
Author(s):  
Natalie A Schwehr ◽  
Karen M Kuntz ◽  
Mary Butler ◽  
Eva A Enns ◽  
Nathan D Shippee ◽  
...  

Background: Relapsing-onset multiple sclerosis (MS) typically starts in early- to mid-adulthood, yet the trajectory of disease activity over the subsequent lifetime remains poorly defined. Previous studies have not quantified the age-specific portion of decreases in annualized relapse rates (ARR). Objective: The aim of this article is to determine, under a range of disease-related assumptions, the age-specific component of decreases in ARR over time among adults with relapsing-onset MS. Methods: We used a simulation modeling approach to examine a range of assumptions about changes in ARR due to age versus disability status. Scenarios included variations in initial ARR and rate of worsening on the Expanded Disability Status Scale. Model parameters were developed through analysis of MS patients in British Columbia, Canada, and literature review. Results: We found a substantial age-specific decrease in ARR in all simulated scenarios, independent of disability worsening. Under a range of clinically plausible assumptions, 88%–97% of the decrease was attributed to age and 3%–13% to disability. The age-specific decrease ranged from 22% to 37% per 5 years for a wide range of initial ARR (0.33–1.0). Conclusion: Decreases in ARR were due mostly to age rather than disability status. To facilitate informed decision making in MS, it is important to quantify the dynamic relationship between relapses and age.


Sign in / Sign up

Export Citation Format

Share Document