Microbial decomposition of polymer organic matter related to plankton development in a reservoir: activity of α-, β-glucosidase, and β-N-acetylglucosaminidase and uptake of N-acetylglucosamine

1992 ◽  
Vol 126 (2) ◽  
pp. 193-211 ◽  
Author(s):  
Jaroslav Vrba ◽  
Jiří Nedoma ◽  
Karel Šimek ◽  
Jaromír Seda
1996 ◽  
Vol 34 (9) ◽  
pp. 157-164 ◽  
Author(s):  
Kim C.-H. ◽  
M. Hosomi ◽  
A. Murakami ◽  
M. Okada

Effects of clay on fouling due to organic substances and clay were evaluated by model fouling materials and kaolin. Model fouling materials selected were protein, polysaccharide, fulvic acid, humic acid and algogenic matter (EOM:ectracellular organic matter, microbial decomposition products) and kaolin was selected as the clay material. Polysulfone membrane (MWCO(Molecular Weight Cut-Off) 10,000, 50,000 and 200,000) was used as an ultrafiltration membrane. In particular, the flux measurement of solutions containing algogenic matter used an ultrafiltration membrane of MWCO 50,000. The flux of protein and polysaccharide with coexistence of kaolin increased in the case of the ratio of MW/MWCO being greater than one, but did not increase in the case of the MW/MWCO ratio being below one. In contrast, the flux of fulvic acid and humic acid with coextence of kaolin decreased regardless of the ratio of MW/MWCO. The addition of dispersion agent and coagulant in the organic substances and kaolin mixture solution changed the size distribution of kaolin, and resulted in a change of the flux. EOM and microbial decomposition products decreased with the increase of the fraction of organic matter having molecular weight more than MWCO of membrane. The flux of the algogenic organic matter with coexistence of kaolin decreased with the increase of the amount of kaolin. It was suggested that the decline of the flux with coexistence of kaolin was due to the change of the resistance of the kaolin cake layer corresponding to the change in kaolin size distribution with charge.


2004 ◽  
Vol 19 (2) ◽  
pp. 128-136 ◽  
Author(s):  
Yuka Ohnishi ◽  
Minoru Fujii ◽  
Shinichiro Murashige ◽  
Atsushi Yuzawa ◽  
Hitoshi Miyasaka ◽  
...  

Water ◽  
2020 ◽  
Vol 12 (11) ◽  
pp. 3059
Author(s):  
Diogo Folhas ◽  
Armando C. Duarte ◽  
Martin Pilote ◽  
Warwick F. Vincent ◽  
Pedro Freitas ◽  
...  

Thermokarst lakes result from the thawing of ice-rich permafrost and are widespread across northern landscapes. These waters are strong emitters of methane, especially in permafrost peatland regions, where they are stained black by high concentrations of dissolved organic matter (DOM). In the present study, we aimed to structurally characterize the DOM from a set of peatland thermokarst lakes that are known to be intense sites of microbial decomposition and methane emission. Samples were collected at different depths from three thermokarst lakes in the Sasapimakwananisikw (SAS) River valley near the eastern Hudson Bay community of Kuujjuarapik–Whapmagoostui (Nunavik, Canada). Samples were analyzed by spectrofluorometry, Fourier-transform infrared spectroscopy (FTIR), nuclear magnetic resonance spectroscopy (NMR), and elemental analysis. Fluorescence analyses indicated considerable amounts of autochthonous DOM in the surface waters of one of SAS 1A, indicating a strong bioavailability of labile DOM, and consequently a greater methanogenic potential. The three lakes differed in their chemical composition and diversity, suggesting various DOM transformations phenomena. The usefulness of complementary analytical approaches to characterize the complex mixture of DOM in permafrost peatland waters cannot be overlooked, representing a first step towards greater comprehension of the organic geochemical properties of these permafrost-derived systems.


2018 ◽  
Vol 11 (12) ◽  
pp. 4779-4796 ◽  
Author(s):  
Haicheng Zhang ◽  
Daniel S. Goll ◽  
Stefano Manzoni ◽  
Philippe Ciais ◽  
Bertrand Guenet ◽  
...  

Abstract. Microbial decomposition of plant litter is a crucial process for the land carbon (C) cycle, as it directly controls the partitioning of litter C between CO2 released to the atmosphere versus the formation of new soil organic matter (SOM). Land surface models used to study the C cycle rarely considered flexibility in the decomposer C use efficiency (CUEd) defined by the fraction of decomposed litter C that is retained as SOM (as opposed to be respired). In this study, we adapted a conceptual formulation of CUEd based on assumption that litter decomposers optimally adjust their CUEd as a function of litter substrate C to nitrogen (N) stoichiometry to maximize their growth rates. This formulation was incorporated into the widely used CENTURY soil biogeochemical model and evaluated based on data from laboratory litter incubation experiments. Results indicated that the CENTURY model with new CUEd formulation was able to reproduce differences in respiration rate of litter with contrasting C : N ratios and under different levels of mineral N availability, whereas the default model with fixed CUEd could not. Using the model with flexible CUEd, we also illustrated that litter quality affected the long-term SOM formation. Litter with a small C : N ratio tended to form a larger SOM pool than litter with larger C : N ratios, as it could be more efficiently incorporated into SOM by microorganisms. This study provided a simple but effective formulation to quantify the effect of varying litter quality (N content) on SOM formation across temporal scales. Optimality theory appears to be suitable to predict complex processes of litter decomposition into soil C and to quantify how plant residues and manure can be harnessed to improve soil C sequestration for climate mitigation.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Markus Steffens ◽  
Lilli Zeh ◽  
Derek M. Rogge ◽  
Henning Buddenbaum

AbstractOrganic matter is an important constituent of soils that controls many soil functions and is of vital importance for ecosystem services like climate regulation and food security. Soil organic matter (SOM consists of a wide spectrum of different organic substances that are highly heterogeneous in terms of chemical composition, stability against microbial decomposition and turnover time. SOM is heterogeneously distributed in the soil profile impeding its fast assessment. A technique to accurately measure SOM quality and quantity with a high spatial resolution in the soil profile is presently lacking. Imaging visible light and near infrared spectroscopy (imVisIR) is a promising technique for the fast and spatially resolved assessment of SOM quality and quantity. In this study, we evaluate the potential of imVisIR to quantitatively map the labile particulate organic matter fraction in undisturbed cores from mineral soils.


2015 ◽  
Vol 12 (7) ◽  
pp. 2227-2245 ◽  
Author(s):  
J. Strauss ◽  
L. Schirrmeister ◽  
K. Mangelsdorf ◽  
L. Eichhorn ◽  
S. Wetterich ◽  
...  

Abstract. The organic-carbon (OC) pool accumulated in Arctic permafrost (perennially frozen ground) equals the carbon stored in the modern atmosphere. To give an idea of how Yedoma region permafrost could respond under future climatic warming, we conducted a study to quantify the organic-matter quality (here defined as the intrinsic potential to be further transformed, decomposed, and mineralized) of late Pleistocene (Yedoma) and Holocene (thermokarst) deposits on the Buor-Khaya Peninsula, northeast Siberia. The objective of this study was to develop a stratigraphic classified organic-matter quality characterization. For this purpose the degree of organic-matter decomposition was estimated by using a multiproxy approach. We applied sedimentological (grain-size analyses, bulk density, ice content) and geochemical parameters (total OC, stable carbon isotopes (δ13C), total organic carbon : nitrogen (C / N) ratios) as well as lipid biomarkers (n-alkanes, n-fatty acids, hopanes, triterpenoids, and biomarker indices, i.e., average chain length, carbon preference index (CPI), and higher-plant fatty-acid index (HPFA)). Our results show that the Yedoma and thermokarst organic-matter qualities for further decomposition exhibit no obvious degradation–depth trend. Relatively, the C / N and δ13C values and the HPFA index show a significantly better preservation of the organic matter stored in thermokarst deposits compared to Yedoma deposits. The CPI data suggest less degradation of the organic matter from both deposits, with a higher value for Yedoma organic matter. As the interquartile ranges of the proxies mostly overlap, we interpret this as indicating comparable quality for further decomposition for both kinds of deposits with likely better thermokarst organic-matter quality. Supported by principal component analyses, the sediment parameters and quality proxies of Yedoma and thermokarst deposits could not be unambiguously separated from each other. This revealed that the organic-matter vulnerability is heterogeneous and depends on different decomposition trajectories and the previous decomposition and preservation history. Elucidating this was one of the major new contributions of our multiproxy study. With the addition of biomarker data, it was possible to show that permafrost organic-matter degradation likely occurs via a combination of (uncompleted) degradation cycles or a cascade of degradation steps rather than as a linear function of age or sediment facies. We conclude that the amount of organic matter in the studied sediments is high for mineral soils and of good quality and therefore susceptible to future decomposition. The lack of depth trends shows that permafrost acts like a giant freezer, preserving the constant quality of ancient organic matter. When undecomposed Yedoma organic matter is mobilized via thermokarst processes, the fate of this carbon depends largely on the environmental conditions; the carbon could be preserved in an undecomposed state till refreezing occurs. If modern input has occurred, thermokarst organic matter could be of a better quality for future microbial decomposition than that found in Yedoma deposits.


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