scholarly journals Complete Sequence Analysis of Two Methanotroph-SpecificrepABC-Containing Plasmids from Methylocystis sp. Strain SC2

2012 ◽  
Vol 78 (12) ◽  
pp. 4373-4379 ◽  
Author(s):  
Bomba Dam ◽  
Michael Kube ◽  
Somasri Dam ◽  
Richard Reinhardt ◽  
Werner Liesack
Keyword(s):  
Southern Hybridization ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Complete Sequence ◽  
Pulsed Field Gel Electrophoresis ◽  
Nitrous Oxide Reductase ◽  
Particulate Methane Monooxygenase ◽  
Content Type ◽  
Low Copy Number ◽  
Replication Module

ABSTRACTThe complete nucleotide sequences of two large, low-copy-number plasmids of 229.6 kb (pBSC2-1) and 143.5 kb (pBSC2-2) were determined during assembly of the whole-genome shotgun sequences of the methane-oxidizing bacteriumMethylocystissp. strain SC2. The physical existence of the two plasmids in strain SC2 was confirmed by pulsed-field gel electrophoresis followed by Southern hybridization. Both plasmids have a conserved replication module of therepABCsystem and carry genes involved in their faithful maintenance and conjugation. In addition, they contain genes that might be involved in essential metabolic processes. These include several heavy metal resistance genes and copper transport genes in pBSC2-1 and a complete nitrous oxide reductase operon and apmoCsingleton in pBSC2-2, the latter encoding the PmoC subunit of particulate methane monooxygenase.

scholarly journals Heavy Metal Resistance Genes Are Associated withblaNDM-1- andblaCTX-M-15-CarryingEnterobacteriaceae

2018 ◽  
Vol 62 (5) ◽  
pp. e02642-17 ◽  
Author(s):  
Qiu E. Yang ◽  
Siham Rajab Agouri ◽  
Jonathan Mark Tyrrell ◽  
Timothy Rutland Walsh
Keyword(s):  
Heavy Metal ◽  
Resistance Genes ◽  
Gel Electrophoresis ◽  
Heavy Metal Resistance ◽  
Multidrug Resistant ◽  
Metal Resistance ◽  
Pulsed Field Gel Electrophoresis ◽  
High Association ◽  
S1 Nuclease ◽  
Content Type

ABSTRACTThe occurrence of heavy metal resistance genes in multiresistantEnterobacteriaceaepossessingblaNDM-1orblaCTX-M-15genes was examined by PCR and pulsed-field gel electrophoresis with S1 nuclease. Compared with clinical susceptible isolates (10.0% to 30.0%), thepcoA,merA,silC, andarsAgenes occurred with higher frequencies inblaNDM-1-positive (48.8% to 71.8%) andblaCTX-M-15-positive (19.4% to 52.8%) isolates, and they were mostly located on plasmids. Given the high association of metal resistance genes with multidrug-resistantEnterobacteriaceae, increased vigilance needs to be taken with the use of heavy metals in hospitals and the environment.

scholarly journals Mobile Genetic Elements Related to the Diffusion of Plasmid-Mediated AmpC β-Lactamases or Carbapenemases from Enterobacteriaceae: Findings from a Multicenter Study in Spain

2015 ◽  
Vol 59 (9) ◽  
pp. 5260-5266 ◽  
Author(s):  
L. Zamorano ◽  
E. Miró ◽  
C. Juan ◽  
L. Gómez ◽  
G. Bou ◽  
...  
Keyword(s):  
Southern Hybridization ◽  
Mobile Genetic Elements ◽  
Pulsed Field Gel Electrophoresis ◽  
Content Type ◽  
Genetic Elements ◽  
Chromosomal Origin ◽  
Class 1 ◽  
Rapid Dissemination ◽  
Large Plasmids ◽  
Genetic Context

ABSTRACTWe examined the genetic context of 74 acquiredampCgenes and 17 carbapenemase genes from 85 of 640Enterobacteriaceaeisolates collected in 2009. Using S1 pulsed-field gel electrophoresis and Southern hybridization, 37 of 74blaAmpCgenes were located on large plasmids of different sizes belonging to six incompatibility groups. We used sequencing and PCR mapping to investigate the regions flanking the acquiredampCgenes. TheblaCMY-2-like genes were associated with ISEcp1; the surroundingblaDHAgenes were similar toKlebsiella pneumoniaeplasmid pTN60013 associated with IS26and thepspandsapoperons; and theblaACC-1genes were associated with IS26elements inserted into ISEcp1. All of the carbapenemase genes (blaVIM-1,blaIMP-22, andblaIMP-28) were located in class 1 integrons. Therefore, although plasmids are the main cause of the rapid dissemination ofampCgenes amongEnterobacteriaceae, we need to be aware that other mobile genetic elements, such as insertion sequences, transposons, or integrons, can be involved in the mobilization of these genes of chromosomal origin. Additionally, three new integrons (In846 to In848) are described in this study.

scholarly journals Target (MexB)- and Efflux-Based Mechanisms Decreasing the Effectiveness of the Efflux Pump Inhibitor D13-9001 in Pseudomonas aeruginosa PAO1: Uncovering a New Role for MexMN-OprM in Efflux of β-Lactams and a Novel Regulatory Circuit (MmnRS) Controlling MexMN Expression

2018 ◽  
Vol 63 (2) ◽  
pp. e01718-18 ◽  
Author(s):  
Srijan Ranjitkar ◽  
Adriana K. Jones ◽  
Mina Mostafavi ◽  
Zachary Zwirko ◽  
Oleg Iartchouk ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Efflux Pump ◽  
Response Regulator ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Rna Seq ◽  
Efflux Pump Inhibitor ◽  
Content Type ◽  
Regulatory Circuit ◽  
Outer Membrane Channel

ABSTRACT Efflux pumps contribute to antibiotic resistance in Gram-negative pathogens. Correspondingly, efflux pump inhibitors (EPIs) may reverse this resistance. D13-9001 specifically inhibits MexAB-OprM in Pseudomonas aeruginosa. Mutants with decreased susceptibility to MexAB-OprM inhibition by D13-9001 were identified, and these fell into two categories: those with alterations in the target MexB (F628L and ΔV177) and those with an alteration in a putative sensor kinase of unknown function, PA1438 (L172P). The alterations in MexB were consistent with reported structural studies of the D13-9001 interaction with MexB. The PA1438L172P alteration mediated a >150-fold upregulation of MexMN pump gene expression and a >50-fold upregulation of PA1438 and the neighboring response regulator gene, PA1437. We propose that these be renamed mmnR and mmnS for MexMN regulator and MexMN sensor, respectively. MexMN was shown to partner with the outer membrane channel protein OprM and to pump several β-lactams, monobactams, and tazobactam. Upregulated MexMN functionally replaced MexAB-OprM to efflux these compounds but was insusceptible to inhibition by D13-9001. MmnSL172P also mediated a decrease in susceptibility to imipenem and biapenem that was independent of MexMN-OprM. Expression of oprD, encoding the uptake channel for these compounds, was downregulated, suggesting that this channel is also part of the MmnSR regulon. Transcriptome sequencing (RNA-seq) of cells encoding MmnSL172P revealed, among other things, an interrelationship between the regulation of mexMN and genes involved in heavy metal resistance.

scholarly journals Plasmid-Borne Type E Neurotoxin Gene Clusters in Clostridium botulinum Strains

2013 ◽  
Vol 79 (12) ◽  
pp. 3856-3859 ◽  
Author(s):  
Zhen Zhang ◽  
Hannamari Hintsa ◽  
Ying Chen ◽  
Hannu Korkeala ◽  
Miia Lindström
Keyword(s):  
Gene Cluster ◽  
Gel Electrophoresis ◽  
Clostridium Botulinum ◽  
Southern Hybridization ◽  
Gene Clusters ◽  
Pulsed Field Gel Electrophoresis ◽  
Content Type ◽  
Pulsed Field ◽  
Large Plasmids

ABSTRACTA collection of 36Clostridium botulinumtype E strains was examined by pulsed-field gel electrophoresis (PFGE) and Southern hybridization with probes targeted tobotEandorfX1in the neurotoxin gene cluster. Three strains were found to contain neurotoxin subtype E1 gene clusters in large plasmids of about 146 kb in size.

scholarly journals Draft Genome Sequence of Heavy Metal-Resistant Bacillus cereus NWUAB01

2019 ◽  
Vol 8 (7) ◽  
Author(s):  
Olubukola Oluranti Babalola ◽  
Bukola Rhoda Aremu ◽  
Ayansina Segun Ayangbenro
Keyword(s):  
Heavy Metal ◽  
Bacillus Cereus ◽  
Genome Sequence ◽  
Gold Mining ◽  
Draft Genome ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Draft Genome Sequence ◽  
Mining Site ◽  
Content Type

Bacillus cereus NWUAB01 was isolated from a gold-mining site in Vryburg, South Africa, for its multiple heavy metal resistance properties. Here, we report the draft genome sequence of B. cereus NWUAB01 obtained with Illumina sequencing.

scholarly journals Draft Genome Sequence of Arthrobacter oryzae TNBS02, a Bacterium Containing Heavy Metal Resistance Genes, Isolated from Soil of Antarctica

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
Yong-Joon Cho ◽  
Ahnna Cho ◽  
Soon Gyu Hong ◽  
Han-Gu Choi ◽  
Ok-Sun Kim
Keyword(s):  
Heavy Metal ◽  
Genome Sequence ◽  
Resistance Genes ◽  
Draft Genome ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Terra Nova Bay ◽  
Victoria Land

Arthrobacter oryzae TNBS02 was isolated from soil at Terra Nova Bay of Victoria Land, Antarctica. The genome consists of a chromosome with 4,248,670 bp which contains a total of 3,994 genes.

scholarly journals Draft Genome Sequence of Pseudomonas aeruginosa Strain Hex1T Isolated from Soils Contaminated with Used Lubricating Oil in Argentina

2017 ◽  
Vol 5 (2) ◽  
Author(s):  
Adela M. Luján ◽  
Sofía Feliziani ◽  
Andrea M. Smania
Keyword(s):  
Energy Source ◽  
Pseudomonas Aeruginosa ◽  
Genome Sequence ◽  
Draft Genome ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Draft Genome Sequence ◽  
Lubricating Oil ◽  
Content Type ◽  
Used Lubricating Oil

ABSTRACT Pseudomonas aeruginosa Hex1T was isolated from soils contaminated with used lubricating oil from a garage in Córdoba, Argentina. This strain is capable of utilizing this pollutant as the sole carbon and energy source. Here, we present the 6.9-Mb draft genome sequence of Hex1T, which contains many heavy metal-resistance genes.

scholarly journals Genome Sequence of an Australian Monophasic Salmonella enterica subsp. enterica Typhimurium Isolate (TW-Stm6) Carrying a Large Plasmid with Multiple Antimicrobial Resistance Genes

2017 ◽  
Vol 5 (33) ◽  
Author(s):  
Mike L. Dyall-Smith ◽  
Yuhong Liu ◽  
Helen Billman-Jacobe
Keyword(s):  
Genome Sequence ◽  
Resistance Genes ◽  
Salmonella Enterica ◽  
Heavy Metal Resistance ◽  
Multidrug Resistant ◽  
Metal Resistance ◽  
Large Plasmid ◽  
Content Type ◽  
Antimicrobial Resistance Genes ◽  
Resistant Strains

ABSTRACT We report the genome sequence of a monophasic Salmonella enterica subsp. enterica Typhimurium strain (TW-Stm6) isolated in Australia that is similar to epidemic multidrug-resistant strains from Europe and elsewhere. This strain carries additional antibiotic and heavy-metal resistance genes on a large (275-kb) IncHI2 plasmid.

scholarly journals Coselection of Cadmium and Benzalkonium Chloride Resistance in Conjugative Transfers from Nonpathogenic Listeria spp. to Other Listeriae

2012 ◽  
Vol 78 (21) ◽  
pp. 7549-7556 ◽  
Author(s):  
S. Katharios-Lanwermeyer ◽  
M. Rakic-Martinez ◽  
D. Elhanafi ◽  
S. Ratani ◽  
J. M. Tiedje ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Benzalkonium Chloride ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Processing Plant ◽  
Cadmium Resistance ◽  
Transfer Resistance ◽  
Content Type ◽  
Plant Environment ◽  
Disinfectant Resistance

ABSTRACTResistance to the quaternary ammonium disinfectant benzalkonium chloride (BC) may be an important contributor to the ability ofListeriaspp. to persist in the processing plant environment. Although a plasmid-borne disinfectant resistance cassette (bcrABC) has been identified inListeria monocytogenes, horizontal transfer of these genes has not been characterized. NonpathogenicListeriaspp. such asL. innocuaandL. welshimeriare more common thanL. monocytogenesin food processing environments and may contribute to the dissemination of disinfectant resistance genes in listeriae, includingL. monocytogenes. In this study, we investigated conjugative transfer of resistance to BC and to cadmium from nonpathogenicListeriaspp. to other nonpathogenic listeriae, as well as toL. monocytogenes. BC-resistantL. welshimeriandL. innocuaharboringbcrABC, along with the cadmium resistance determinantcadA2, were able to transfer resistance to other nonpathogenic listeriae as well as toL. monocytogenesof diverse serotypes, including strains from the 2011 cantaloupe outbreak. Transfer among nonpathogenicListeriaspp. was noticeably higher at 25°C than at 37°C, whereas acquisition of resistance byL. monocytogeneswas equally efficient at 25 and 37°C. When the nonpathogenic donors were resistant to both BC and cadmium, acquisition of cadmium resistance was an effective surrogate for transfer of resistance to BC, suggesting coselection between these resistance attributes. The results suggest that nonpathogenicListeriaspp. may behave as reservoirs for disinfectant and heavy metal resistance genes for other listeriae, including the pathogenic speciesL. monocytogenes.

scholarly journals Genetic Determinants for Cadmium and Arsenic Resistance among Listeria monocytogenes Serotype 4b Isolates from Sporadic Human Listeriosis Patients

2013 ◽  
Vol 79 (7) ◽  
pp. 2471-2476 ◽  
Author(s):  
Sangmi Lee ◽  
M. Rakic-Martinez ◽  
L. M. Graves ◽  
T. J. Ward ◽  
R. M. Siletzky ◽  
...  
Keyword(s):  
Heavy Metal ◽  
Listeria Monocytogenes ◽  
Heavy Metal Resistance ◽  
Metal Resistance ◽  
Genetic Determinants ◽  
Chromosomal Locus ◽  
Cadmium Resistance ◽  
Arsenic Resistance ◽  
Content Type ◽  
Serotype 4B

ABSTRACTInListeria monocytogenesserotype 4b isolates from sporadic listeriosis, heavy metal resistance was primarily encountered in certain clonal groups (ECI, ECII, and ECIa). All arsenic-resistant isolates harbored the arsenic resistance cassette previously identified in pLI100; ECIa harbored additional arsenic resistance genes and a novel cadmium resistance determinant in a conserved chromosomal locus.

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