scholarly journals Complete Genome Sequences of Six Copper-Resistant Xanthomonas citri pv. citri Strains Causing Asiatic Citrus Canker, Obtained Using Long-Read Technology

2017 ◽  
Vol 5 (12) ◽  
Author(s):  
Damien Richard ◽  
Claudine Boyer ◽  
Christian Vernière ◽  
Blanca I. Canteros ◽  
Pierre Lefeuvre ◽  
...  
Keyword(s):  
Citrus Canker ◽  
Economic Losses ◽  
Broad Host Range ◽  
Citrus Species ◽  
Xanthomonas Citri ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes ◽  
Long Read ◽  
Resistant Strains

ABSTRACT The gammaproteobacterium Xanthomonas citri pv. citri causes Asiatic citrus canker. Pathotype A strains have a broad host range, which includes most commercial citrus species, and they cause important economic losses worldwide. Control often relies on frequent copper sprays. We present here the complete genomes of six X. citri pv. citri copper-resistant strains.

scholarly journals First Complete Genome Sequences of Xanthomonas citri pv. vignicola Strains CFBP7111, CFBP7112, and CFBP7113 Obtained Using Long-Read Technology

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Mylène Ruh ◽  
Martial Briand ◽  
Sophie Bonneau ◽  
Marie-Agnès Jacques ◽  
Nicolas W. G. Chen
Keyword(s):  
Single Molecule ◽  
Bacterial Blight ◽  
Genomic Data ◽  
Transcription Activator ◽  
Xanthomonas Citri ◽  
Genome Sequences ◽  
Content Type ◽  
Legume Crop ◽  
New Information ◽  
Long Read

ABSTRACT Xanthomonas citri pv. vignicola strains cause bacterial blight of the legume crop cowpea. We report whole-genome sequences of three X. citri pv. vignicola strains obtained using PacBio single-molecule real-time sequencing. Such genomic data provide new information on pathogenicity factors, such as transcription activator-like effectors.

scholarly journals Draft Genome Sequences of 284 Xanthomonas citri pv. citri Strains Causing Asiatic Citrus Canker

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Damien Richard ◽  
Adrien Rieux ◽  
Pierre Lefeuvre ◽  
Azali Hamza ◽  
Kanta Kumar Lobin ◽  
...  
Keyword(s):  
Draft Genome ◽  
Citrus Canker ◽  
Transcription Activator ◽  
Indian Ocean Region ◽  
Xanthomonas Citri ◽  
Genome Sequences ◽  
Southwest Indian Ocean ◽  
Content Type ◽  
Ocean Region ◽  
Atypical Feature

ABSTRACT High-quality Illumina assemblies were produced from 284 Xanthomonas citri pv. citri pathotype A strains mostly originating from the Southwest Indian Ocean region, a subset of which was also sequenced using MinION technology. Some strains hosted chromosomally encoded transcription activator-like effector (TALE) genes, an atypical feature for this bacterium.

scholarly journals Complete Genome Sequences of Six Copper-Resistant Xanthomonas Strains Causing Bacterial Spot of Solaneous Plants, Belonging to X. gardneri, X. euvesicatoria, and X. vesicatoria, Using Long-Read Technology

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Damien Richard ◽  
Claudine Boyer ◽  
Pierre Lefeuvre ◽  
Blanca I. Canteros ◽  
Shyam Beni-Madhu ◽  
...  
Keyword(s):  
Complete Genome ◽  
Integrated Management ◽  
Bacterial Spot ◽  
Genome Sequences ◽  
Content Type ◽  
Resistant Phenotype ◽  
Long Read ◽  
Bacterial Spot Disease ◽  
Resistant Strains ◽  
Xanthomonas Vesicatoria

ABSTRACT Xanthomonas vesicatoria, Xanthomonas euvesicatoria, and Xanthomonas gardneri cause bacterial spot disease. Copper has been applied since the 1920s as part of integrated management programs. The first copper-resistant strains were reported some decades later. Here, we fully sequenced six Xanthomonas strains pathogenic to tomato and/or pepper and having a copper-resistant phenotype.

scholarly journals Complete Genome Sequences of Three Xanthomonas citri Strains from Texas

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Alejandra Munoz Bodnar ◽  
Gem Santillana ◽  
Vessela Mavrodieva ◽  
Zhaowei Liu ◽  
Mark Nakhla ◽  
...  
Keyword(s):  
Complete Genome ◽  
Citrus Canker ◽  
Xanthomonas Citri ◽  
Genome Sequences ◽  
Content Type ◽  
Large Plasmids

ABSTRACT The complete genome sequences of three Xanthomonas citri strains isolated from lime trees in Texas were found to belong to the Aw group. All carried nearly identical large plasmids with similarity to those of a citrus canker strain from India and to xanthomonads from Africa and Colombia. All three strains harbored unusual pthA homologs.

scholarly journals Complete Genome Sequences of Six Novel Macaca mulatta Papillomavirus Types Isolated from Genital Sites of Rhesus Monkeys in Hong Kong SAR, China

2018 ◽  
Vol 7 (22) ◽  
Author(s):  
Teng Long ◽  
Po Yee Wong ◽  
Wendy C. S. Ho ◽  
Robert D. Burk ◽  
Paul K. S. Chan ◽  
...  
Keyword(s):  
Hong Kong ◽  
Macaca Mulatta ◽  
Complete Genome ◽  
Rhesus Monkeys ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes ◽  
Hong Kong Sar

The complete genomes of six Macaca mulatta papillomavirus types isolated from genital sites of rhesus monkeys were characterized, and less than 72% identity with the complete L1 genes of known papillomaviruses was found. Macaca mulatta papillomavirus type 2 (MmPV2), MmPV3, and MmPV6 cluster into the genus Alphapapillomavirus, and MmPV4, MmPV5, and MmPV7 cluster into the genus Gammapapillomavirus.

scholarly journals Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Håkon Kaspersen ◽  
Thomas H. A. Haverkamp ◽  
Hanna Karin Ilag ◽  
Øivind Øines ◽  
Camilla Sekse ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Complete Genome ◽  
Flow Cell ◽  
Hybrid Assembly ◽  
Genome Sequences ◽  
Content Type ◽  
Short Reads ◽  
Long Reads ◽  
Long Read ◽  
Hybrid Assemblies

ABSTRACT In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.

scholarly journals Closed Genome Sequences of Three Salmonella enterica Strains Belonging to Serovars Saintpaul, Weltevreden, and Thompson, Isolated from Mexico

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Narjol Gonzalez-Escalona ◽  
J. R. Aguirre-Sánchez ◽  
J. R. Ibarra-Rodríguez ◽  
C. Chaidez-Quiroz ◽  
Jaime Martinez-Urtaza
Keyword(s):  
River Water ◽  
Salmonella Enterica ◽  
Genome Sequences ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Long Read ◽  
Sequence Types

Here, we report the genome sequences of three Salmonella enterica strains belonging to serovars Weltevreden (CFSAN047349), Saintpaul (CFSAN047351), and Thompson (CFSAN047352), isolated from river water in Sinaloa, Mexico. The genomes were closed by a combination of long-read and short-read sequencing. The strain sequence types (STs) are ST365, ST50, and ST26, respectively.

scholarly journals Complete Genome Sequences of Penicillin-Resistant Bacillus anthracis Strain PCr, Isolated from Bone Powder

2019 ◽  
Vol 8 (35) ◽  
Author(s):  
Akiko Okutani ◽  
Satoshi Inoue ◽  
Shigeru Morikawa
Keyword(s):  
Bacillus Anthracis ◽  
Resistant Strain ◽  
Etiologic Agent ◽  
Beta Lactam ◽  
Genome Sequences ◽  
Content Type ◽  
Beta Lactam Antibiotics ◽  
Naturally Occurring ◽  
Bone Powder ◽  
Resistant Strains

Bacillus anthracis, the etiologic agent of anthrax, is susceptible to beta-lactam antibiotics, but few cases of naturally occurring penicillin-resistant strains have been reported. We report the genome sequence of penicillin-resistant strain Bacillus anthracis PCr, isolated from imported bone powder in 1978 in Japan.

scholarly journals Complete Genome Sequences of Two Human Oral Microbiome Commensals: Streptococcus salivarius ATCC 25975 and S. salivarius ATCC 27945

2017 ◽  
Vol 5 (24) ◽  
Author(s):  
Robert R. Butler ◽  
Jahna T. A. Soomer-James ◽  
Michel Frenette ◽  
Jean-François Pombert
Keyword(s):  
Complete Genome ◽  
Oral Microbiome ◽  
Streptococcus Salivarius ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes

ABSTRACT Streptococcus salivarius strains are significant contributors to the human oral microbiome. Some possess unique fimbriae that give them the ability to coaggregate and colonize particular oral structures. We present here the complete genomes of Streptococcus salivarius Lancefield K−/K+ strains ATCC 25975 and ATCC 27945, which can and cannot, respectively, produce fimbriae.

scholarly journals Bismerthiazol Inhibits Xanthomonas citri subsp. citri Growth and Induces Differential Expression of Citrus Defense-Related Genes

2016 ◽  
Vol 106 (7) ◽  
pp. 693-701 ◽  
Author(s):  
Xiaoyue Yu ◽  
Cheryl M. Armstrong ◽  
Mingguo Zhou ◽  
Yongping Duan
Keyword(s):  
Defense Response ◽  
Citrus Canker ◽  
Economic Losses ◽  
Marker Genes ◽  
Flavonoid Pathway ◽  
Xanthomonas Citri ◽  
Pr Genes ◽  
Rice Bacterial Blight ◽  
Host Defense Response ◽  
Serious Disease

Citrus canker, caused by Xanthomonas citri ssp. citri, is a serious disease that causes substantial economic losses to the citrus industry worldwide. The bactericide bismerthiazol has been used to control rice bacterial blight (X. oryzae pv. oryzae). In this paper, we demonstrate that bismerthiazol can effectively control citrus canker by both inhibiting the growth of X. citri ssp. citri and triggering the plant’s host defense response through the expression of several pathogenesis-related genes (PR1, PR2, CHI, and RpRd1) and the nonexpresser of PR genes (NPR1, NPR2, and NPR3) in ‘Duncan’ grapefruit, especially at early treatment times. In addition, we found that bismerthiazol induced the expression of the marker genes CitCHS and CitCHI in the flavonoid pathway and the PAL1 (phenylalanine ammonia lyase 1) gene in the salicylic acid (SA) biosynthesis pathway at different time points. Moreover, bismerthiazol also induced the expression of the priming defense-associated gene AZI1. Taken together, these results indicate that the induction of the defense response in ‘Duncan’ grapefruit by bismerthiazol may involve the SA signaling pathway and the priming defense and that bismerthiazol may serve as an alternative to copper bactericides for the control of citrus canker.

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