scholarly journals Complete Genome Sequence of Sulfuriferula sp. Strain AH1, a Sulfur-Oxidizing Autotroph Isolated from Weathered Mine Tailings from the Duluth Complex in Minnesota

2017 ◽  
Vol 5 (32) ◽  
Author(s):  
Daniel S. Jones ◽  
Elizabeth W. Roepke ◽  
An An Hua ◽  
Beverly E. Flood ◽  
Jake V. Bailey
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Mine Tailings ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sulfur Oxidation ◽  
Mercury Resistance ◽  
Inorganic Sulfur ◽  
Duluth Complex ◽  
Sulfur Oxidizing

ABSTRACT We report the closed and annotated genome sequence of Sulfuriferula sp. strain AH1. Strain AH1 has a 2,877,007-bp chromosome that includes a partial Sox system for inorganic sulfur oxidation and a complete nitrogen fixation pathway. It also has a single 39,138-bp plasmid with genes for arsenic and mercury resistance.

scholarly journals Complete Genome Sequence of a Marine Bacterium, Pseudomonas pseudoalcaligenes Strain S1, with High Mercury Resistance and Bioaccumulation Capacity

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Bing Liu ◽  
Chao Bian ◽  
Huiwei Huang ◽  
Zhiwei Yin ◽  
Qiong Shi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Marine Environment ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Marine Bacterium ◽  
Mercury Resistance ◽  
High Concentration ◽  
Pseudomonas Pseudoalcaligenes ◽  
Phylogenetic Status ◽  
High Mercury

Pseudomonas pseudoalcaligenes S1, a marine bacterium, exhibited strong resistance to a high concentration of Hg 2+ and remarkable Hg 2+ bioaccumulation capacity. Here, we report the 6.9-Mb genome sequence of P. pseudoalcaligenes S1, which may help clarify its phylogenetic status and provide further understanding of the mechanisms of mercury bioremediation in a marine environment.

scholarly journals Complete Genome Sequence of Rhizobium japonicum Podophage Pasto

2021 ◽  
Vol 10 (3) ◽  
Author(s):  
Nikhil Manuel ◽  
Leika Rushing ◽  
Aravind Ravindran ◽  
Heather Newkirk ◽  
Ben Burrowes ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genomic Analysis ◽  
Rhizobium Japonicum ◽  
Negative Bacterium ◽  
Significant Similarity ◽  
Gram Negative ◽  
Content Type

ABSTRACT Rhizobium japonicum is a Gram-negative bacterium of interest for research into nitrogen fixation in legumes. This article describes the isolation, sequencing, and annotation of R. japonicum podophage Pasto. While it shows no significant similarity to identified phages, genomic analysis indicates that Pasto may be temperate and is a novel T7-like podophage.

scholarly journals Complete Genome Sequence of the Extremely Thermoacidophilic Archaeon Acidianus manzaensis YN-25

2017 ◽  
Vol 5 (25) ◽  
Author(s):  
Ya-long Ma ◽  
Jin-lan Xia ◽  
Yun Yang ◽  
Zhen-yuan Nie ◽  
Hong-chang Liu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Dna Sequences ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Elemental Sulfur ◽  
Sulfur Compounds ◽  
Inorganic Sulfur ◽  
Acidianus Manzaensis

ABSTRACT The complete genome of Acidianus manzaensis YN-25 consists of a chromosome of 2,687,463 bp, with a G+C content of 30.62% and 2,746 coding DNA sequences. This archaeon contains a series of specific genes involved in the oxidation of elemental sulfur and reduced inorganic sulfur compounds.

scholarly journals Analysis of the Complete Genome Sequence of the Widely Studied Strain Bradyrhizobium betae PL7HG1T Reveals the Presence of Photosynthesis Genes and a Putative Plasmid

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Sylvie Cloutier ◽  
Eden S. P. Bromfield
Keyword(s):  
Nitrogen Fixation ◽  
Sugar Beet ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Circular Chromosome ◽  
Content Type ◽  
Photosynthesis Genes

Here, we present the complete genome sequence of the widely studied strain Bradyrhizobium betae PL7HG1T, isolated from a tumor on the roots of sugar beet. The genome consists of a 7.2-Mbp circular chromosome containing key photosynthesis genes but not genes for nodulation and nitrogen fixation. A putative plasmid was also detected.

scholarly journals Complete Genome Sequence of a Mucilaginibacter sp. Strain Isolated from Estuarine Soil Contaminated with Mine Tailings from the Samarco Disaster at Fundão Dam

2021 ◽  
Vol 10 (41) ◽  
Author(s):  
Ana L. S. Vasconcelos ◽  
Thaiane Defalco ◽  
Armando C. F. Dias ◽  
Leticia Barrientos ◽  
Angelo F. Bernardino ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Resistance Genes ◽  
Mine Tailings ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Metal Resistance

We report the complete genome sequence of Mucilaginibacter strain 21P, which was isolated from estuarine soil contaminated with mine tailings from the Samarco disaster, which occurred in 2015 in Brazil. The genome sequence comprised 4,739,655 bp, with a G+C content of 43.2%, and harbors multiple antibiotic and metal resistance genes.

Stable symbiotic nitrogen fixation under water-deficit field conditions by a stress-tolerant alfalfa microsymbiont and its complete genome sequence

2017 ◽  
Vol 263 ◽  
pp. 52-54 ◽  
Author(s):  
Cintia Jozefkowicz ◽  
Silvina Brambilla ◽  
Romina Frare ◽  
Margarita Stritzler ◽  
Carlos Piccinetti ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Water Deficit ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Symbiotic Nitrogen Fixation ◽  
Field Conditions

scholarly journals Complete Genome Sequence of Strain BW-2, a Magnetotactic Gammaproteobacterium in the Family Ectothiorhodospiraceae, Isolated from a Brackish Spring in Death Valley, California

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Corey Geurink ◽  
Christopher T. Lefevre ◽  
Caroline L. Monteil ◽  
Viviana Morillo-Lopez ◽  
Fernanda Abreu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Magnetotactic Bacteria ◽  
Death Valley ◽  
Origin And Evolution ◽  
The Family ◽  
Sulfur Oxidizing ◽  
Magnetite Nanocrystals

We report the complete 4.1-Mb genome sequence of strain BW-2, a magnetotactic, sulfur-oxidizing rod, belonging to the family Ectothiorhodospiraceae of the class Gammaproteobacteria, that biomineralizes membrane-bounded magnetite nanocrystals in its magnetosomes. This genome sequence, in comparison with those of other magnetotactic bacteria, is essential for understanding the origin and evolution of magnetotaxis and magnetosome biomineralization.

Complete genome sequence of Acidithiobacillus ferrooxidans YNTRS-40, a strain of the ferrous iron- and sulfur-oxidizing acidophile

2019 ◽  
Author(s):  
Yu Zhang ◽  
Shuang Zhang ◽  
Dan Zhao ◽  
Yongqing Ni ◽  
Weidong Wang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Acidithiobacillus Ferrooxidans ◽  
Complete Genome ◽  
Ferrous Iron ◽  
Sulfur Oxidation ◽  
Aerobic Bacterium ◽  
Chromosomal Dna ◽  
Essential Information ◽  
Sulfur Oxidizing ◽  
Ph Range

Abstract Acidithiobacillus ferrooxidans YNTRS-40 ( A. ferrooxidans ) is a chemolithoautotrophic aerobic bacterium isolated from Tengchong, Yunnan Province, China and with a broad growth pH range of 1.0-4.5. This study reported the genome sequence of this strain and the information of genes related to the adaptation of diverse stresses and the oxidation of ferrous iron and sulfur. Results showed that YNTRS-40 possesses chromosomal DNA (3,209,933-bp) and plasmid DNA (47,104-bp). The complete genome of 3,257,037-bp was consist of 3349 CDS genes comprising 6 rRNAs, 52 tRNAs and 6 ncRNAs. There are many encoded genes associated with diverse stresses adaptation and ferrous iron and sulfur oxidation such as rus operon, res operon, pet Ⅰ , pet Ⅱ , sqr gene, doxDA , cydAB and cyoABCD . This study will provide essential information for further application of A. ferrooxidans YNTRS-40 in industry.

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