scholarly journals Draft Genome Sequence ofMethanohalophilus mahiiStrain DAL1 Reconstructed from a Hydraulic Fracturing-Produced Water Metagenome

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Daniel Lipus ◽  
Amit Vikram ◽  
Daniel E. Ross ◽  
Kyle Bibby

We report here the 1,882,100-bp draft genome sequence ofMethanohalophilus mahiistrain DAL1, recovered from Marcellus Shale hydraulic fracturing-produced water using metagenomic contig binning. Genome annotation revealed several key methanogenesis genes and provides valuable information on archaeal activity associated with hydraulic fracturing-produced water environments.

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Daniel E. Ross ◽  
Djuna Gulliver

The draft genome sequence of Pseudomonas stutzeri strain K35 was separated from a metagenome derived from a produced water microbial community of a coalbed methane well. The genome encodes a complete nitrogen fixation pathway and the upper and lower naphthalene degradation pathways.


2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Andrey R. Pavlov ◽  
Tatiana V. Tyazhelova ◽  
Konstantin V. Moiseenko ◽  
Daria V. Vasina ◽  
Olga V. Mosunova ◽  
...  

A standard draft genome sequence of the white rot saprotrophic fungus Trametes hirsuta 072 ( Basidiomycota , Polyporales ) is presented. The genome sequence contains about 33.6 Mb assembled in 141 scaffolds with a G+C content of ~57.6%. The draft genome annotation predicts 14,598 putative protein-coding open reading frames (ORFs).


2022 ◽  
Vol 18 (1) ◽  
pp. 1-13
Author(s):  
Ramanathan Sowdhamini ◽  

Saffron (Crocus sativus L.) is the low yielding plant of medicinal and economic importance. Therefore, it is of interest to report the draft genome sequence of C. sativus. The draft genome of C. sativus has been assembled using Illumina sequencing and is 3.01 Gb long covering 84.24% of genome. C. sativus genome annotation identified 53,546 functional genes (including 5726 transcription factors), 862,275 repeats and 964,231 SSR markers. The genes involved in the apocarotenoids biosynthesis pathway (crocin, crocetin, picrocrocin, and safranal) were found in the draft genome analysis.


2017 ◽  
Vol 83 (8) ◽  
Author(s):  
Daniel Lipus ◽  
Amit Vikram ◽  
Daniel Ross ◽  
Daniel Bain ◽  
Djuna Gulliver ◽  
...  

ABSTRACTMicrobial activity in the produced water from hydraulically fractured oil and gas wells may potentially interfere with hydrocarbon production and cause damage to the well and surface infrastructure via corrosion, sulfide release, and fouling. In this study, we surveyed the microbial abundance and community structure of produced water sampled from 42 Marcellus Shale wells in southwestern Pennsylvania (well age ranged from 150 to 1,846 days) to better understand the microbial diversity of produced water. We sequenced the V4 region of the 16S rRNA gene to assess taxonomy and utilized quantitative PCR (qPCR) to evaluate the microbial abundance across all 42 produced water samples. Bacteria of the orderHalanaerobialeswere found to be the most abundant organisms in the majority of the produced water samples, emphasizing their previously suggested role in hydraulic fracturing-related microbial activity. Statistical analyses identified correlations between well age and biocide formulation and the microbial community, in particular, the relative abundance ofHalanaerobiales. We further investigated the role of members of the orderHalanaerobialesin produced water by reconstructing and annotating aHalanaerobiumdraft genome (named MDAL1), using shotgun metagenomic sequencing and metagenomic binning. The recovered draft genome was found to be closely related to the speciesH. congolense, an oil field isolate, andHalanaerobiumsp. strain T82-1, also recovered from hydraulic fracturing produced water. Reconstruction of metabolic pathways revealedHalanaerobiumsp. strain MDAL1 to have the potential for acid production, thiosulfate reduction, and biofilm formation, suggesting it to have the ability to contribute to corrosion, souring, and biofouling events in the hydraulic fracturing infrastructure.IMPORTANCEThere are an estimated 15,000 unconventional gas wells in the Marcellus Shale region, each generating up to 8,000 liters of hypersaline produced water per day throughout its lifetime (K. Gregory, R. Vidic, and D. Dzombak, Elements 7:181–186, 2011,https://doi.org/10.2113/gselements.7.3.181; J. Arthur, B. Bohm, and M. Layne, Gulf Coast Assoc Geol Soc Trans 59:49–59, 2009;https://www.marcellusgas.org/index.php). Microbial activity in produced waters could lead to issues with corrosion, fouling, and souring, potentially interfering with hydraulic fracturing operations. Previous studies have found microorganisms contributing to corrosion, fouling, and souring to be abundant across produced water samples from hydraulically fractured wells; however, these findings were based on a limited number of samples and well sites. In this study, we investigated the microbial community structure in produced water samples from 42 unconventional Marcellus Shale wells, confirming the dominance of the genusHalanaerobiumin produced water and its metabolic potential for acid and sulfide production and biofilm formation.


2020 ◽  
Vol 9 (38) ◽  
Author(s):  
Hanan R. Shehata ◽  
Richmond A. Chandler ◽  
Steven G. Newmaster

ABSTRACT Here, we report the draft genome sequence of Lactobacillus rhamnosus strain CBC-LR1, which was isolated from naturally processed, homemade dairy foods in Bulgaria. The genome was assembled in 29 contigs with a total length of 2,892,155 bp and a GC content of 46.7%. Genome annotation predicted 2,638 coding genes and 49 tRNA genes.


2017 ◽  
Vol 5 (23) ◽  
Author(s):  
Fabian Moreno-Avitia ◽  
Luis Lozano ◽  
Jose Utrilla ◽  
Francisco Bolívar ◽  
Adelfo Escalante

ABSTRACT Pseudomonas chlororaphis strain ATCC 9446 is a biocontrol-related organism. We report here its draft genome sequence assembled into 35 contigs consisting of 6,783,030 bp. Genome annotation predicted a total of 6,200 genes, 6,128 coding sequences, 81 pseudogenes, 58 tRNAs, 4 noncoding RNAs (ncRNAs), and 41 frameshifted genes.


2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Elham Karimi ◽  
Jorge M. S. Gonçalves ◽  
Margarida Reis ◽  
Rodrigo Costa

ABSTRACT Here, we describe the draft genome sequence of Microbacterium sp. strain Alg239_V18, an actinobacterium retrieved from the marine sponge Spongia sp. Genome annotation revealed a vast gene repertoire involved in antibiotic and heavy metal-resistance, and a versatile carbohydrate assimilation metabolism with potential for chitin utilization.


2018 ◽  
Vol 6 (6) ◽  
pp. e00002-18
Author(s):  
Jing Zhang ◽  
Junxi Hu ◽  
Xiaobo Zhang ◽  
Xiang Zeng

ABSTRACT Here, we report the draft genome sequence of Anaeromicrobium sediminis DY2726D, isolated from a west Pacific Ocean sediment sample. The genome comprises 4,710,590 bp in 56 contigs, with a G+C content of 31.2%. A total of 3,811 protein-coding sequences were predicted. The genome annotation revealed that DY2726D may represent a marine type of Clostridiaceae.


2018 ◽  
Vol 7 (16) ◽  
Author(s):  
Hiro Takahashi ◽  
Satoshi Tanaka ◽  
Shuhei Hayashi ◽  
Shido Miyaki ◽  
Anna Takahashi ◽  
...  

Trebouxiophyceae sp. KSI-1 is a green alga isolated from a seashore hot spring on Satsuma Iōjima in Kagoshima, Japan, and is highly tolerant to oxidative stress.


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