scholarly journals Draft Genome Sequence of Pantoea agglomerans JM1, a Strain Isolated from Soil Polluted by Industrial Production of Beta-Lactam Antibiotics That Exhibits Valacyclovir-Like Hydrolase Activity

2017 ◽  
Vol 5 (38) ◽  
Author(s):  
Jiří Zahradník ◽  
Martina Plačková ◽  
Andrea Palyzová ◽  
Helena Marešová ◽  
Eva Kyslíková ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Industrial Production ◽  
Draft Genome ◽  
Pantoea Agglomerans ◽  
Draft Genome Sequence ◽  
Beta Lactam ◽  
Beta Lactams ◽  
Gene Encoding ◽  
Content Type ◽  
Beta Lactam Antibiotics

ABSTRACT Strain Pantoea agglomerans JM1 was isolated from the soil of a microbiome that had been exposed to polluting pharmaceuticals. The bacterium exhibited enzymatic activities useful for the biotransformation of beta-lactams. The genome of the strain was assembled and described, and the gene encoding valacyclovir-like hydrolase was identified.

scholarly journals Draft Genome Sequence of a Bacteroides fragilis Strain Isolated from Peritoneal Fluid of a Patient from Kazakhstan

2020 ◽  
Vol 9 (26) ◽  
Author(s):  
Elena Zholdybayeva ◽  
Saniya Kozhakhmetova ◽  
Sabina Atavliyeva ◽  
Pavel Tarlykov ◽  
Yerlan Ramankulov
Keyword(s):  
Genome Sequence ◽  
Peritoneal Fluid ◽  
Draft Genome ◽  
Bacteroides Fragilis ◽  
Draft Genome Sequence ◽  
Beta Lactam ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Beta Lactam Antibiotics

ABSTRACT Here, we report the draft genome sequence of Bacteroides fragilis strain KZ02, isolated from a patient with peritonitis hospitalized in a health facility in Nur-Sultan, Kazakhstan. The genome of the strain contains 4,103 protein-coding genes, including the cepA gene, which causes resistance to beta-lactam antibiotics.

scholarly journals Draft Genome Sequence of Ezakiella peruensis Strain M6.X2, a Human Gut Gram-Positive Anaerobic Coccus

2018 ◽  
Vol 6 (9) ◽  
pp. e01487-17
Author(s):  
Awa Diop ◽  
Khoudia Diop ◽  
Enora Tomei ◽  
Didier Raoult ◽  
Florence Fenollar ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Antibiotic Resistance Genes ◽  
Draft Genome Sequence ◽  
Human Gut ◽  
Gene Encoding ◽  
Content Type ◽  
Protein Encoding ◽  
Short Palindromic Repeat ◽  
Encoding Genes

ABSTRACT We report here the draft genome sequence of Ezakiella peruensis strain M6.X2T. The draft genome is 1,672,788 bp long and harbors 1,589 predicted protein-encoding genes, including 26 antibiotic resistance genes with 1 gene encoding vancomycin resistance. The genome also exhibits 1 clustered regularly interspaced short palindromic repeat region and 333 genes acquired by horizontal gene transfer.

scholarly journals Genomic Sequence of the Strain Enterococcus faecium ICIS 18

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
M. V. Sycheva ◽  
L. P. Popova ◽  
T. M. Pashkova ◽  
Y. A. Khlopko ◽  
O. L. Kartashova ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Enterococcus Faecium ◽  
Genomic Sequence ◽  
Draft Genome ◽  
Beta Lactam ◽  
Human Feces ◽  
Content Type ◽  
Beta Lactam Antibiotics ◽  
Genes Encoding ◽  
Feces Analysis

We report here the draft genome sequence of Enterococcus faecium strain ICIS 18, which was isolated from human feces. Analysis of the E. faecium ICIS 18 genome revealed genes encoding resistance to metals, fluoroquinolones, and beta-lactam antibiotics.

scholarly journals Draft Genome Sequence of Staphylococcus epidermidis UMB8493, Isolated from the Female Urinary Tract

2020 ◽  
Vol 9 (23) ◽  
Author(s):  
Anthony Truckenbrod ◽  
Taylor Miller-Ensminger ◽  
Adelina Voukadinova ◽  
Alan J. Wolfe ◽  
Catherine Putonti
Keyword(s):  
Urinary Tract ◽  
Genome Sequence ◽  
Staphylococcus Epidermidis ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Beta Lactam ◽  
Content Type ◽  
Bladder Symptoms ◽  
Fosfomycin Resistance ◽  
Female Urinary Tract

ABSTRACT Staphylococcus epidermidis is a native member of the human microbiota. Here, we report the draft genome sequence of S. epidermidis UMB8493, an isolate from a catheterized urine sample from a female with overactive bladder symptoms. The 2.54-Mbp draft genome encodes genes associated with beta-lactam and fosfomycin resistance.

scholarly journals Draft Genome Sequence of Escherichia coli Strain Tj, Isolated from the Varzob River in Tajikistan

2020 ◽  
Vol 9 (41) ◽  
Author(s):  
Munavvara Dzhuraeva ◽  
Mehrangez Shokirova ◽  
Ani Azaryan ◽  
Hovik Panosyan ◽  
Khursheda Bobodzhanova ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Draft Genome ◽  
Coli Strain ◽  
Draft Genome Sequence ◽  
Gene Encoding ◽  
Content Type ◽  
E Coli ◽  
Lambdoid Phage ◽  
Specific Phage

ABSTRACT The 4.6-Mbp draft genome sequence of Escherichia coli strain Tj, isolated from the Varzob River in Tajikistan, is presented. This strain possesses four prophage elements related to Shigella phage SfV, E. coli O157:H7-specific phage ϕV10, lambdoid phage HK225, and coliphage Ayreon. It contains a gene encoding a hemolysin E toxin.

scholarly journals Draft Genome Sequence of Haloferax volcanii SS0101, Isolated from Salt Farms in Samut Sakhon, Thailand

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Suwanan Wanthongcharoen ◽  
Wariya Yamprayoonswat ◽  
Pattarawan Ruangsuj ◽  
Nuttida Thongpramul ◽  
Watthanachai Jumpathong ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Haloferax Volcanii ◽  
Draft Genome Sequence ◽  
Halophilic Archaeon ◽  
Gene Encoding ◽  
Content Type ◽  
Key Enzyme

Haloferax volcanii SS0101 is a halophilic archaeon isolated from salt farms in Thailand. The genome sequence of H. volcanii SS0101 contains a gene encoding capreomycidine synthase, a key enzyme for capreomycidine biosynthesis. This 3.8-Mb draft genome sequence of H. volcanii SS0101 will provide the tools for investigating genes involved in capeomycidine production in haloarchaea.

scholarly journals Draft Genome Sequence of the Putative Endophytic Bacterium Pantoea agglomerans R6, Associated with Lactuca serriola from South Africa

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Brandon Istain ◽  
Prudent S. Mokgokong ◽  
Ruomou Wu ◽  
Junaid Mia ◽  
Arun Gokul ◽  
...  
Keyword(s):  
South Africa ◽  
Genome Sequence ◽  
Draft Genome ◽  
Endophytic Bacterium ◽  
Pantoea Agglomerans ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Lactuca Serriola ◽  
Prickly Lettuce

ABSTRACT Here, we present the draft genome sequence (∼4.7 Mb) of the endopyhtic bacterium Pantoea agglomerans strain R6, which was isolated from surface-sterilized roots of Lactuca serriola (prickly lettuce).

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of a Vibrio harveyi Strain Associated with Vibriosis in Pacific White Shrimp (Litopenaeus vannamei)

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Emille Moreno ◽  
Marci Parks ◽  
Lee J. Pinnell ◽  
James J. Tallman ◽  
Jeffrey W. Turner
Keyword(s):  
Genome Sequence ◽  
Litopenaeus Vannamei ◽  
Vibrio Harveyi ◽  
Draft Genome ◽  
Penaeid Shrimp ◽  
Pacific White Shrimp ◽  
Draft Genome Sequence ◽  
White Shrimp ◽  
Content Type ◽  
Future Studies

ABSTRACT Vibrio harveyi is a Gram-negative bacterium associated with vibriosis in penaeid shrimp. Here, we report the draft genome sequence of a V. harveyi strain isolated from Pacific white shrimp (Litopenaeus vannamei) during a vibriosis outbreak. The availability of this genome will aid future studies of vibriosis in shrimp aquaculture.

scholarly journals Draft Genome Sequence of Pantoea sp. Strain A4, a Rafflesia-Associated Bacterium That ProducesN-Acylhomoserine Lactones as Quorum-Sensing Molecules

2012 ◽  
Vol 194 (23) ◽  
pp. 6610-6610 ◽  
Author(s):  
Kar-Wai Hong ◽  
Han Ming Gan ◽  
Siew-Moon Low ◽  
Patrick Kok Yuen Lee ◽  
Yee-Meng Chong ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
First Time

ABSTRACTPantoeasp. strain A4 is a Gram-negative bacterium isolated from theRafflesiaflower. We present here, for the first time, the genome sequence ofRafflesia-associatedPantoeasp. strain A4, which exhibited quorum-sensing activity.

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