scholarly journals Metagenome-Assembled Genome Sequences of Acetobacterium sp. Strain MES1 and Desulfovibrio sp. Strain MES5 from a Cathode-Associated Acetogenic Microbial Community

2017 ◽  
Vol 5 (36) ◽  
Author(s):  
Daniel E. Ross ◽  
Christopher W. Marshall ◽  
Harold D. May ◽  
R. Sean Norman
Keyword(s):  
Microbial Community ◽  
Draft Genome ◽  
Genome Sequences ◽  
Comparative Analyses ◽  
Microbial Electrosynthesis ◽  
Functional Potential ◽  
Insight Into

ABSTRACT Draft genome sequences of Acetobacterium sp. strain MES1 and Desulfovibrio sp. strain MES5 were obtained from the metagenome of a cathode-associated community enriched within a microbial electrosynthesis system (MES). The draft genome sequences provide insight into the functional potential of these microorganisms within an MES and a foundation for future comparative analyses.

scholarly journals Draft Genome Sequences of Two Hydrogenogenic Carboxydotrophic Bacteria, Carboxydocella sp. Strains JDF658 and ULO1, Isolated from Two Distinct Volcanic Fronts in Japan

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Yuto Fukuyama ◽  
Tatsuki Oguro ◽  
Kimiho Omae ◽  
Yasuko Yoneda ◽  
Takashi Yoshida ◽  
...  
Keyword(s):  
Carbon Monoxide ◽  
Microbial Community ◽  
Draft Genome ◽  
Carbon Monoxide Oxidation ◽  
Primary Energy ◽  
Genome Sequences ◽  
Carboxydotrophic Bacteria

ABSTRACT Hydrogenogenic carboxydotrophs may provide hydrogen as primary energy for the microbial community via carbon monoxide oxidation. To investigate the genetics of carbon monoxide metabolism, we report here the draft genome sequences of the hydrogenogenic carboxydotrophs Carboxydocella sp. strains JDF658 (2.60 Mbp; G+C content, 49.2%) and ULO1 (2.70 Mbp; G+C content, 48.8%).

scholarly journals Draft Genome Sequences of 12 Monophasic Salmonella enterica subsp. enterica Serotype Typhimurium 1,4,[5],12:i:− Strains Isolated from Wild Griffon Vultures in Eastern Spain

2019 ◽  
Vol 8 (42) ◽  
Author(s):  
Clara Marin ◽  
Giuseppe D’Auria ◽  
Llúcia Martínez-Priego ◽  
Francisco Marco-Jiménez
Keyword(s):  
Salmonella Enterica ◽  
Draft Genome ◽  
Wild Animals ◽  
Genome Sequences ◽  
Host Pathogen Interactions ◽  
Content Type ◽  
Zoonotic Pathogens ◽  
Host Pathogen ◽  
Serovar Typhimurium ◽  
Insight Into

Monophasic Salmonella enterica subsp. enterica serovar Typhimurium is one of the most common zoonotic pathogens. Salmonella species reside in a wide variety of hosts, including wild animals. Thus, we report here the genome sequences of 12 monophasic S. Typhimurium strains isolated from healthy wild vultures to gain better insight into their epidemiology and host-pathogen interactions.

scholarly journals Genome Sequences of Three Nocardia cyriacigeorgica Strains and One Nocardia asteroides Strain

2019 ◽  
Vol 8 (33) ◽  
Author(s):  
Florian Vautrin ◽  
Emmanuelle Bergeron ◽  
Audrey Dubost ◽  
Danis Abrouk ◽  
Christophe Martin ◽  
...  
Keyword(s):  
Type Strain ◽  
Draft Genome ◽  
Nocardia Asteroides ◽  
Environmental Isolates ◽  
Genome Sequences ◽  
Content Type ◽  
Nocardia Cyriacigeorgica ◽  
Insight Into

We report four draft genome sequences of Nocardia spp. The strains are the Nocardia cyriacigeorgica DSM 44484 pathogenic type strain; two environmental isolates, Nocardia cyriacigeorgica EML446 and EML1456; and the Nocardia asteroides ATCC 19247 nonpathogenic type strain, with estimated genome sizes of 6.3 to 6.8 Mb. The study of these isolates will provide insight into physiology, evolution, and pathogenicity of Nocardia spp.

scholarly journals Draft Genome Sequence of Methanobacterium sp. Strain 34x, Reconstructed from an Enriched Electromethanogenic Biocathode

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Ala’a Ragab ◽  
Dario R. Shaw ◽  
Krishna P. Katuri ◽  
Pascal E. Saikaly
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Nucleotide Level ◽  
Content Type ◽  
Functional Potential ◽  
Insight Into ◽  
Genomic Similarity

A draft genome sequence of Methanobacterium sp. strain 34x was reconstructed from the metagenome of an enriched electromethanogenic biocathode operated in a microbial electrosynthesis (MES) reactor. Methanobacterium sp. strain 34x has 68.98% nucleotide-level genomic similarity with the closest related methanogen available with a whole-genome assembly, Methanobacterium lacus strain AL-21. This genome will provide insight into the functional potential of methanogens at the biocathodes of MES systems.

scholarly journals A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Julie L. Meyer ◽  
Ulrike Jaekel ◽  
Benjamin J. Tully ◽  
Brian T. Glazer ◽  
C. Geoffrey Wheat ◽  
...  
Keyword(s):  
Microbial Community ◽  
Bacterial Community ◽  
Elevated Temperatures ◽  
Geochemical Composition ◽  
Crustal Fluid ◽  
Functional Potential ◽  
Mid Atlantic Ridge ◽  
Bacterial Groups ◽  
Insight Into

Abstract The rock-hosted, oceanic crustal aquifer is one of the largest ecosystems on Earth, yet little is known about its indigenous microorganisms. Here we provide the first phylogenetic and functional description of an active microbial community residing in the cold oxic crustal aquifer. Using subseafloor observatories, we recovered crustal fluids and found that the geochemical composition is similar to bottom seawater, as are cell abundances. However, based on relative abundances and functional potential of key bacterial groups, the crustal fluid microbial community is heterogeneous and markedly distinct from seawater. Potential rates of autotrophy and heterotrophy in the crust exceeded those of seawater, especially at elevated temperatures (25 °C) and deeper in the crust. Together, these results reveal an active, distinct, and diverse bacterial community engaged in both heterotrophy and autotrophy in the oxygenated crustal aquifer, providing key insight into the role of microbial communities in the ubiquitous cold dark subseafloor biosphere.

scholarly journals Genome Resources of Three West African Strains of Pantoea ananatis Causing Bacterial Blight and Grain Discoloration of Rice

2020 ◽  
Vol 110 (9) ◽  
pp. 1500-1502
Author(s):  
Kossi Kini ◽  
Pierre Lefeuvre ◽  
Lucie Poulin ◽  
Drissa Silué ◽  
Ralf Koebnik
Keyword(s):  
Bacterial Blight ◽  
Molecular Level ◽  
Draft Genome ◽  
West African ◽  
Molecular Diagnostic ◽  
Diagnostic Tools ◽  
Genome Sequences ◽  
Pantoea Ananatis ◽  
Genome Data ◽  
Insight Into

Members of the genus Pantoea have been reported as pathogens for many economically important crops, including rice. Little is known about their host−pathogen interactions at the molecular level and the lack of comprehensive genome data impedes targeted breeding strategies toward resistant rice cultivars. Here, we describe the structural and functional annotation of the draft genome sequences of three rice-pathogenic Pantoea ananatis strains, ARC272, ARC310, and ARC311, which were isolated in Burkina Faso, Togo, and Benin, respectively. The genome sequences of these strains will help in developing molecular diagnostic tools and provide new insight into common traits that may enable P. ananatis to infect rice.

scholarly journals Draft Genome Sequences of Escherichia coli Strains Isolated at Calving from the Uterus, Vagina, Vulva, and Rectoanal Junction of a Dairy Cow That Later Developed Metritis

2017 ◽  
Vol 5 (11) ◽  
Author(s):  
Soo Jin Jeon ◽  
Federico Cunha ◽  
Amber Ginn ◽  
KwangCheol Casey Jeong ◽  
Klibs N. Galvão
Keyword(s):  
Escherichia Coli ◽  
Dairy Cow ◽  
Phylogenetic Relationships ◽  
Draft Genome ◽  
Genome Sequences ◽  
Content Type ◽  
E Coli ◽  
Insight Into

ABSTRACT Escherichia coli is involved in the pathogenicity of metritis in cows. We report here the genome sequences of E. coli strains isolated at calving from the uterus, vagina, vulva, and rectoanal junction of a dairy cow that later developed metritis. The genomic similarities will give an insight into phylogenetic relationships among strains.

scholarly journals Draft Genome Sequences of Multiple Frackibacter Strains Isolated from Hydraulically Fractured Shale Environments

2017 ◽  
Vol 5 (32) ◽  
Author(s):  
Anne E. Booker ◽  
Michael D. Johnston ◽  
Rebecca A. Daly ◽  
Kelly C. Wrighton ◽  
Michael J. Wilkins
Keyword(s):  
Natural Gas ◽  
Draft Genome ◽  
Community Members ◽  
Genome Sequences ◽  
Gas Well ◽  
Insight Into

ABSTRACT The genomes of three novel Frackibacter strains (WG11, WG12, and WG13) were sequenced. These strains were isolated from hypersaline fluid collected from a hydraulically fractured natural gas well. These genomes provide information on the mechanisms necessary for growth in these environments and offer insight into interactions with other community members.

scholarly journals First Insight into the Genome Sequences of Two Linezolid-Resistant Nocardia farcinica Strains Isolated from Patients with Cystic Fibrosis

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Sylvia Valdezate ◽  
Sara Monzón ◽  
Noelia Garrido ◽  
Angel Zaballos ◽  
María J. Medina-Pascual ◽  
...  
Keyword(s):  
Cystic Fibrosis ◽  
Draft Genome ◽  
23S Rrna ◽  
Genome Sequences ◽  
Content Type ◽  
Nocardia Farcinica ◽  
Linezolid Resistance ◽  
Insight Into ◽  
Rrna Mutation

ABSTRACT The draft genome sequences of two Nocardia farcinica strains isolated from two patients with cystic fibrosis (CF), resistant to trimethoprim/sulfamethoxazole and linezolid, are reported here. The estimated genome sizes were 5.8 Mb with a 70.63% G+C content. Transposases from Tn916 were detected, but not 23S rRNA mutation (G2576T) related to linezolid resistance.

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