scholarly journals Genome Sequence of Geobacillus stearothermophilus DSM 458, an Antimicrobial-Producing Thermophilic Bacterium, Isolated from a Sugar Beet Factory

2017 ◽  
Vol 5 (43) ◽  
Author(s):  
Kevin Egan ◽  
Philip Kelleher ◽  
Des Field ◽  
Mary C. Rea ◽  
R. Paul Ross ◽  
...  
Keyword(s):  
Sugar Beet ◽  
Genome Sequence ◽  
In Silico ◽  
Thermophilic Bacterium ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Geobacillus Stearothermophilus ◽  
Biosynthetic Genes ◽  
Content Type

ABSTRACT This paper reports the full genome sequence of the antimicrobial-producing bacterium Geobacillus stearothermophilus DSM 458, isolated in a sugar beet factory in Austria. In silico analysis reveals the presence of a number of novel bacteriocin biosynthetic genes.

scholarly journals Full-Genome Sequence of Thalassotalea euphylliae H1, Isolated from a Montipora capitata Coral Located in Hawai’i

2018 ◽  
Vol 7 (20) ◽  
Author(s):  
Stephen Summers ◽  
Marnie L. Freckelton ◽  
Brian T. Nedved ◽  
Scott A. Rice ◽  
Michael G. Hadfield
Keyword(s):  
Genome Sequence ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Short Read ◽  
Content Type ◽  
Montipora Capitata ◽  
Long Reads

The isolate of Thalassotalea euphylliae H1 was collected from the surface of a Montipora capitata coral. The genome was assembled using long reads from a Nanopore MinION sequencer for scaffolding and complemented with short-read MiSeq sequences.

scholarly journals Complete Genome Sequence of Psittacine Adenovirus 1, Identified from Poicephalus senegalus in Italy

2018 ◽  
Vol 7 (11) ◽  
Author(s):  
Adelaide Milani ◽  
Gianpiero Zamperin ◽  
Alice Fusaro ◽  
Annalisa Salviato ◽  
Luca Bano ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Full Genome Sequence ◽  
Full Genome ◽  
High Genetic Diversity ◽  
Content Type ◽  
First Time

Using a metagenomics approach, we were able to determine for the first time the full-genome sequence of a psittacine adenovirus 1 isolate that was recovered from the liver of a dead Senegal parrot (Poicephalus senegalus) in Italy. The results of the phylogenetic investigations revealed the existence of high genetic diversity among adenoviruses circulating in psittacine birds.

scholarly journals Complete Genome Sequence of the Bacterial Component of Mysorin Biopreparation

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Alexey M. Afonin ◽  
Emma S. Gribchenko ◽  
Gulnar A. Akhtemova ◽  
Yuri V. Laktionov ◽  
Andrej P. Kozhemyakov ◽  
...  
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Soil Microorganisms ◽  
Full Genome Sequence ◽  
Plant Growth Promoting Bacteria ◽  
Full Genome ◽  
Circular Chromosome ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Growth Promoting

ABSTRACT Plants can form various beneficial associations with soil microorganisms, such as associations with plant growth-promoting bacteria (PGPB). In this work, we report the full-genome sequence of the component of Mysorin biopreparation, identified as Microbacterium hominis, consisting of a single 3.5-Mbp circular chromosome.

scholarly journals Complete Genome Sequence of Streptococcus iniae 89353, a Virulent Strain Isolated from Diseased Tilapia in Taiwan

2017 ◽  
Vol 5 (4) ◽  
Author(s):  
Hong-Yi Gong ◽  
Sheng-Han Wu ◽  
Chun-Yao Chen ◽  
Chang-Wen Huang ◽  
Jenn-Kan Lu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Virulence Genes ◽  
Vaccine Development ◽  
Virulent Strain ◽  
Full Genome Sequence ◽  
Streptococcus Iniae ◽  
Full Genome ◽  
Content Type ◽  
Genome Information

ABSTRACT Streptococcus iniae 89353 is a virulent strain isolated from diseased tilapia in Taiwan. The full-genome sequence of S. iniae 89353 is 2,098,647 bp. The revealed genome information will be beneficial for identification and understanding of potential virulence genes of Streptococcus iniae and possible immunogens for vaccine development against streptococcosis.

scholarly journals Full-Genome Sequence of Listeria monocytogenes Strain H34, Isolated from a Newborn with Sepsis in Uruguay

2017 ◽  
Vol 5 (24) ◽  
Author(s):  
Francis Muchaamba ◽  
Claudia Guldimann ◽  
Taurai Tasara ◽  
María Inés Mota ◽  
Valeria Braga ◽  
...  
Keyword(s):  
Listeria Monocytogenes ◽  
Genome Sequence ◽  
Severe Disease ◽  
Foodborne Pathogen ◽  
Sequence Type ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Content Type ◽  
Serotype 1 ◽  
Young Old

ABSTRACT The foodborne pathogen Listeria monocytogenes causes severe disease mainly in the vulnerable populations of the young, old, pregnant, and immunocompromised. Here, we present the genome sequence of L. monocytogenes H34, a serotype 1/2b, lineage I, sequence type 489 (ST489) strain, isolated from a neonatal sepsis case in Uruguay.

scholarly journals Complete Genome Sequence of Serratia marcescens Podophage Parlo

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Ryan Bockoven ◽  
Jamie Gutierrez ◽  
Heather Newkirk ◽  
Mei Liu ◽  
Jesse Cahill ◽  
...  
Keyword(s):  
Serratia Marcescens ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Resistance Mechanisms ◽  
Full Genome Sequence ◽  
Multiple Resistance ◽  
Full Genome ◽  
Human Pathogen ◽  
Content Type ◽  
Opportunistic Human Pathogen

ABSTRACT Serratia marcescens is an opportunistic human pathogen with multiple resistance mechanisms that infects hospitalized patients. Here, we report the full genome sequence of S. marcescens podophage Parlo. Parlo is most similar to Erwinia phage PEp14 and encodes a 3,764-residue protein assumed to be a homolog of DarB, an antirestriction protein.

scholarly journals Full-Genome Sequence of Bacillus safensis Strain IDN1, Isolated from Commercially Available Natto in Indonesia

2021 ◽  
Vol 10 (15) ◽  
Author(s):  
Masa-aki Yoshida ◽  
Masahide Uomi ◽  
Tomone Ikai ◽  
Tophil Ilado ◽  
Diana Waturangi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genomic Structure ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Content Type ◽  
Bacillus Safensis ◽  
Circular Genome ◽  
Oxford Nanopore

ABSTRACT We isolated a strain of Bacillus safensis, which we called IDN1, from natto sold in Indonesia. In order to gain insights into its genomic structure and understand its biology, we used the Oxford Nanopore MinION platform followed by PCR to verify the ends and determine its full circular genome sequence.

scholarly journals Genomic Islands in the Full-Genome Sequence of an NAD-Hemin-Independent Avibacterium paragallinarum Strain Isolated from Peru

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Luis Tataje-Lavanda ◽  
Ángela Montalván ◽  
Ricardo Montesinos ◽  
Vladimir Morales-Erasto ◽  
Mirko Zimic-Peralta ◽  
...  
Keyword(s):  
Drug Resistance ◽  
Genome Sequence ◽  
Resistance Genes ◽  
Genomic Islands ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Avibacterium Paragallinarum

Here, we report the full-genome sequence of an NAD-hemin-independent Avibacterium paragallinarum serovar C-2 strain, FARPER-174, isolated from layer hens in Peru. This genome contained 12 potential genomic islands that include ribosomal protein-coding genes, a nadR gene, hemocin-coding genes, sequences of fagos, an rtx operon, and drug resistance genes.

scholarly journals Complete Genome Sequence of Escherichia coli BLR(DE3), a recA-Deficient Derivative of E. coli BL21(DE3)

2017 ◽  
Vol 5 (22) ◽  
Author(s):  
Philippe Goffin ◽  
Philippe Dehottay
Keyword(s):  
Escherichia Coli ◽  
Recombinant Protein ◽  
Genome Sequence ◽  
Parent Strain ◽  
Recombinant Protein Expression ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Content Type ◽  
E Coli ◽  
Strain Bl21

ABSTRACT Escherichia coli BLR(DE3) is a commercially available recA-deficient derivative of BL21(DE3), one of the most widely used strains for recombinant protein expression. Here, we present the full-genome sequence of BLR(DE3) and highlight additional differences with its parent strain BL21(DE3) which were previously unreported but may affect its physiology.

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