scholarly journals Complete Genome Sequences of Escherichia coli Phages vB_EcoM-EP75 and vB_EcoP-EP335

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Joël van Mierlo ◽  
Steven Hagens ◽  
Sander Witte ◽  
Silvia Klamert ◽  
Leoni van de Straat ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Size ◽  
Shiga Toxin ◽  
Complete Genome ◽  
Genome Sequences ◽  
Content Type ◽  
A Genome

Phages vB_EcoM-EP75 (EP75) and vB_EcoP-EP335 (EP335) specifically infect Shiga toxin (Stx)-producing Escherichia coli (STEC) O157 strains. EP75 has a genome size of 158,143 bp and belongs to the genus Vi1virus.

scholarly journals Genome Sequence of a T4-like Phage, Escherichia Phage vB_EcoM-Sa45lw, Infecting Shiga Toxin-Producing Escherichia coli Strains

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Yen-Te Liao ◽  
Yujie Zhang ◽  
Alexandra Salvador ◽  
Vivian C. H. Wu
Keyword(s):  
Escherichia Coli ◽  
Surface Water ◽  
Genome Size ◽  
Shiga Toxin ◽  
Open Reading Frames ◽  
Content Type ◽  
E Coli ◽  
Double Stranded Dna ◽  
A Genome ◽  
Reading Frames

Escherichia phage vB_EcoM-Sa45lw, a new member of the T4-like phages, was isolated from surface water in a produce-growing area. The phage, containing double-stranded DNA with a genome size of 167,353 bp and 282 predicted open reading frames (ORFs), is able to infect generic Escherichia coli and Shiga toxin-producing E. coli O45 and O157 strains.

scholarly journals Complete Genome Sequence of a Shiga Toxin-Producing Escherichia coli O26:H11 Strain (Sequence Type 21) and Two Draft Genome Sequences of Listeria monocytogenes Strains (Clonal Complex 1 [CC1] and CC59) Isolated from Fresh Produce in Germany

2020 ◽  
Vol 9 (49) ◽  
Author(s):  
Gregor Fiedler ◽  
Jan Kabisch ◽  
Erik Brinks ◽  
Sabrina Sprotte ◽  
Christina Boehnlein ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Listeria Monocytogenes ◽  
Shiga Toxin ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clonal Complex ◽  
Draft Genome ◽  
Sequence Type ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The complete genome sequence of a Shiga toxin-producing Escherichia coli (STEC) O26:H11 strain, MBT-5 (sequence type 21 [ST21], stx1a, stx2a, eae, ehxA), and two draft genome sequences of Listeria monocytogenes strains MBT-6 and MBT-7 belonging to the virulent sequence types 1 (ST1, clonal complex 1 [CC1]) and 59 (ST59, CC59), respectively, were determined. The strains were isolated in 2015 from ready-to-eat mixed greens in Germany.

scholarly journals Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains Isolated from Crows

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Michelle Q. Carter ◽  
Antares Pham ◽  
Diana K. Carychao ◽  
Michael B. Cooley
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Complete Genome ◽  
Enteric Pathogens ◽  
Genome Sequences ◽  
Content Type ◽  
Shiga Toxins ◽  
Leafy Greens ◽  
Genes Encoding ◽  
Growing Region

Escherichia coli strains RM9088 and RM10410 were isolated from crows near a leafy greens-growing region in California in April and July 2009, respectively. Both strains carry genes encoding Shiga toxins and other virulence factors in enteric pathogens. Here, we report the complete genome sequences of RM9088 and RM10410.

scholarly journals Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli O146:H10 Strains Recovered from a Foodborne Outbreak in China

2021 ◽  
Vol 10 (43) ◽  
Author(s):  
Hui Huang ◽  
Yanwen Wang ◽  
Chunxu Wang ◽  
Yong Tang ◽  
Lili He ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Complete Genome ◽  
Foodborne Outbreak ◽  
Genome Sequences ◽  
Content Type ◽  
Autonomous Region ◽  
Guangxi Zhuang Autonomous Region ◽  
Foodborne Outbreaks ◽  
The City

Shiga toxin-producing Escherichia coli (STEC) is one of the primary pathogenic contaminants of foods, contributing to several foodborne outbreaks in recent years. Here, we report the complete genome sequences of two non-O157 STEC strains isolated from an outbreak of diarrhea in the city of Guilin, Guangxi Zhuang Autonomous Region, China.

scholarly journals Complete Genome Sequences of Six Lactobacillus iners Strains Isolated from the Human Vagina

2020 ◽  
Vol 9 (20) ◽  
Author(s):  
Michael T. France ◽  
Lindsay Rutt ◽  
Shilpa Narina ◽  
Sarah Arbaugh ◽  
Elias McComb ◽  
...  
Keyword(s):  
Genome Size ◽  
Complete Genome ◽  
Vaginal Swab ◽  
Vaginal Microbiota ◽  
Genome Sequences ◽  
Content Type ◽  
A Genome ◽  
Human Vagina

Lactobacillus iners is a common member of the human vaginal microbiota, with a genome size smaller than that of other lactobacilli. Here, we report the complete genome sequences of six L. iners strains isolated from different vaginal swab specimens. Three strains were found to harbor ∼100-kbp plasmids, which were not known previously.

scholarly journals Complete Genome Sequences of Erwinia amylovora Phages vB_EamP-S2 and vB_EamM-Bue1

2018 ◽  
Vol 7 (3) ◽  
Author(s):  
Leandra E. Knecht ◽  
Yannick Born ◽  
Joël F. Pothier ◽  
Martin J. Loessner ◽  
Lars Fieseler
Keyword(s):  
Genome Size ◽  
Plant Pathogen ◽  
Complete Genome ◽  
Erwinia Amylovora ◽  
Genome Sequences ◽  
Content Type ◽  
A Genome

Phages vB_EamP-S2 (S2) and vB_EamM-Bue1 (Bue1) infect the plant pathogen Erwinia amylovora. S2 has a genome size of 45,495 bp and belongs to the genus SP6virus.

scholarly journals Complete Genome Sequences of Four Brucella suis Strains Isolated from Swiss Wild Boars

2020 ◽  
Vol 9 (49) ◽  
Author(s):  
Hatice Akarsu ◽  
Isabelle Brodard ◽  
Sonja Kittl ◽  
Gudrun Overesch ◽  
Joerg Jores
Keyword(s):  
Genome Size ◽  
Complete Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Wild Boars ◽  
A Genome ◽  
Brucella Suis ◽  
Complete Genomes

ABSTRACT We present the complete genomes of four Brucella suis biovar 2 isolates that were obtained from wild boars in Switzerland in 2008 and 2009. Genomes were sequenced with PacBio technology, contained two chromosomes each, had a genome size of 3.3 Mbp, and contained more than 3,225 genes per genome.

scholarly journals Complete Genome Sequences of Three Shiga Toxin-Producing Escherichia coli O111:H8 Strains Exhibiting an Aggregation Phenotype

2019 ◽  
Vol 8 (1) ◽  
Author(s):  
Craig T. Parker ◽  
Steven Huynh ◽  
James L. Bono ◽  
William G. Miller ◽  
Michael B. Cooley ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Complete Genome ◽  
Foodborne Illness ◽  
Common Source ◽  
Genome Sequences ◽  
Content Type

Non-O157 Shiga toxin-producing Escherichia coli (STEC) strains are a common source of foodborne illness. STEC O111 is among the most prevalent non-O157 STEC serogroups.

scholarly journals Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Håkon Kaspersen ◽  
Thomas H. A. Haverkamp ◽  
Hanna Karin Ilag ◽  
Øivind Øines ◽  
Camilla Sekse ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Complete Genome ◽  
Flow Cell ◽  
Hybrid Assembly ◽  
Genome Sequences ◽  
Content Type ◽  
Short Reads ◽  
Long Reads ◽  
Long Read ◽  
Hybrid Assemblies

ABSTRACT In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.

scholarly journals Complete Genome Sequences of Seven Uropathogenic Escherichia coli Strains Isolated from Postmenopausal Women with Recurrent Urinary Tract Infection

2020 ◽  
Vol 9 (33) ◽  
Author(s):  
Belle M. Sharon ◽  
Amber Nguyen ◽  
Amanda P. Arute ◽  
Neha V. Hulyalkar ◽  
Vivian H. Nguyen ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Urinary Tract Infection ◽  
Urinary Tract ◽  
Tract Infection ◽  
Postmenopausal Women ◽  
Complete Genome ◽  
Recurrent Urinary Tract Infection ◽  
Uropathogenic Escherichia Coli ◽  
Genome Sequences ◽  
Content Type

ABSTRACT Uropathogenic Escherichia coli (UPEC) is the most common cause of urinary tract infection (UTI). This disease disproportionately affects women and frequently develops into recurrent UTI (rUTI) in postmenopausal women. Here, we report the complete genome sequences of seven UPEC isolates obtained from the urine of postmenopausal women with rUTI.

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