scholarly journals Draft Genome Sequence of Bacillus velezensis Strain E68, Isolated from an Oil Battery

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Nathan Liang ◽  
Suha Jabaji

ABSTRACT Bacillus velezensis strain E68 is a biosurfactant-producing bacterium isolated from an oil battery near Chauvin, Alberta, Canada. Strain E68 exhibited antimicrobial activity against fungal pathogens and could potentially serve as a biological control agent. Its genome was sequenced and annotated, revealing the presence of multiple lipopeptide biosynthetic gene clusters.

2020 ◽  
Vol 87 (1) ◽  
Author(s):  
Thao D. Tran ◽  
Celia Del Cid ◽  
Robert Hnasko ◽  
Lisa Gorski ◽  
Jeffery A. McGarvey

ABSTRACT Listeria monocytogenes is a foodborne pathogen that causes high rates of hospitalization and mortality in people infected. Contamination of fresh, ready to eat produce by this pathogen is especially troubling because of the ability of this bacterium to grow on produce under refrigeration temperatures. In this study, we created a library of over 8,000 plant phyllosphere-associated bacteria and screened them for the ability to inhibit the growth of L. monocytogenes in an in vitro fluorescence-based assay. One isolate, later identified as Bacillus amyloliquefaciens ALB65, was able to inhibit the fluorescence of L. monocytogenes by >30-fold in vitro. B. amyloliquefaciens ALB65 was also able to grow, persist, and reduce the growth of L. monocytogenes by >1.5 log CFU on cantaloupe melon rinds inoculated with 5 × 103 CFU at 30°C and was able to completely inhibit its growth at temperatures below 8°C. DNA sequence analysis of the B. amyloliquefaciens ALB65 genome revealed six gene clusters that are predicted to encode genes for antibiotic production; however, no plant or human virulence factors were identified. These data suggest that B. amyloliquefaciens ALB65 is an effective and safe biological control agent for the reduction of L. monocytogenes growth on intact cantaloupe melons and possibly other types of produce. IMPORTANCE Listeria monocytogenes is estimated by the Centers for Disease Control and Prevention and the U.S. Food and Drug Administration to cause disease in approximately 1,600 to 2,500 people in the United States every year. The largest known outbreak of listeriosis in the United States was associated with intact cantaloupe melons in 2011, resulting in 147 hospitalizations and 33 deaths. In this study, we demonstrated that Bacillus amyloliquefaciens ALB65 is an effective biological control agent for the reduction of L. monocytogenes growth on intact cantaloupe melons under both pre- and postharvest conditions. Furthermore, we demonstrated that B. amyloliquefaciens ALB65 can completely inhibit the growth of L. monocytogenes during cold storage (<8°C).


2019 ◽  
Vol 8 (25) ◽  
Author(s):  
Stine Sofie Frank Nielsen ◽  
Simone Weiss ◽  
Seven Nazipi ◽  
Ian P. G. Marshall ◽  
Trine Bilde ◽  
...  

We present the high-quality draft genome sequence of Bacillus subtilis SB-14, isolated from the Namibian social spider Stegodyphus dumicola. In accordance with its antimicrobial activity, both known and potentially novel antimicrobial biosynthetic gene clusters were identified in the genome of SB-14.


2019 ◽  
Vol 8 (24) ◽  
Author(s):  
Robert A. Arthur ◽  
Ainsley C. Nicholson ◽  
Ben W. Humrighouse ◽  
John R. McQuiston ◽  
Brent A. Lasker

Kroppenstedtia sanguinis X0209T, a thermoactinomycete, was isolated from the blood of a patient in Sweden. We report on the draft genome sequence obtained with an Illumina MiSeq instrument. The assembled genome totaled 3.73 Mb and encoded 3,583 proteins. Putative genes for virulence, transposons, and biosynthetic gene clusters have been identified.


2018 ◽  
Vol 6 (25) ◽  
Author(s):  
Julia Pezarini Baptista ◽  
Paula Pinheiro Sanches ◽  
Gustavo Manoel Teixeira ◽  
Alexandre Tadachi Morey ◽  
Eliandro Reis Tavares ◽  
...  

Bacillus velezensis strain LABIM40 holds high potential for biological control of plant pathogens. Its complete genome contains one chromosome of 3,972,310 bp with 3,777 DNA coding sequences and displays 33 gene clusters potentially involved in the suppression of fungal pathogens.


2021 ◽  
Vol 10 (28) ◽  
Author(s):  
Todd Testerman ◽  
Stephen R. Reichley ◽  
Stacy King ◽  
Joerg Graf

We present a draft genome sequence of Janthinobacterium lividum strain ID1246, isolated from within a rainbow trout hatchery raceway. Janthinobacterium spp. are well-known producers of antimicrobial compounds. Due to the unique isolation source, this genome may yield novel biosynthetic gene clusters.


2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Zina Nasfi ◽  
Anja Poehlein ◽  
Henrik Harms ◽  
Emilie Goralski ◽  
Katja M. Fisch ◽  
...  

ABSTRACT Bacillus sp. strain M21 was isolated from an environmental sample. In antibacterial screenings, the strain inhibited growth of Gram-positive and Gram-negative test strains. The genome was assembled into 69 contigs with a total size of 5.178 Mb. The strain contains at least nine biosynthetic gene clusters for the production of specialized metabolites.


2020 ◽  
Vol 9 (50) ◽  
Author(s):  
Yunci Qi ◽  
Keshav K. Nepal ◽  
Jennifer Greif ◽  
Cole Martini ◽  
Chad Tomlinson ◽  
...  

ABSTRACT Here, we report the draft genome sequences of two related Streptomyces sp. strains, JV180 and SP18CM02. Despite their isolation from soils in Connecticut and Missouri (USA), respectively, they are strikingly similar in gene content. Both belong to the Streptomyces griseus clade and harbor several secondary metabolite biosynthetic gene clusters.


2019 ◽  
Vol 8 (18) ◽  
Author(s):  
Irina V. Khilyas ◽  
Kanat A. Tursunov ◽  
Tatiana V. Shirshikova ◽  
Leysan K. Kamaletdinova ◽  
Lilia E. Matrosova ◽  
...  

Here we present a draft genome sequence of laboratory strain Serratia marcescens SM6. Using the antiSMASH 5.0 prediction tool, we identified five biosynthetic gene clusters involved in secondary metabolite production (two siderophores and a biosurfactant serratamolide, a glucosamine derivative, and a thiopeptide).


2017 ◽  
Vol 5 (37) ◽  
Author(s):  
Zujiao Fu ◽  
Rong Xiao ◽  
Rongjun Luo ◽  
Zhan Hu ◽  
Hua Yang ◽  
...  

ABSTRACT We report here the 6,512,057-bp draft genome sequence of Bacillus thuringiensis subsp. aizawai HD133. This strain contains at least 6 cry genes and 13 candidate biosynthetic gene clusters.


2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Haeyoung Jeong ◽  
Seung-Hwan Park ◽  
Soo-Keun Choi

We report the 4.0-Mb draft genome sequence of Bacillus amyloliquefaciens (syn. Bacillus velezensis ) KCTC 13012, which exhibits a broad spectrum of antagonistic activity against bacteria and fungi and promotes plant growth as well. The genome contains an array of biosynthetic gene clusters for secondary metabolites that are comparable to those in Bacillus amyloliquefaciens subsp. plantarum FZB42 T .


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