scholarly journals Complete Genome Sequences for Pseudomonas sp. Strains 29A and 43A

2020 ◽  
Vol 9 (39) ◽  
Author(s):  
David A. Baltrus ◽  
Meara Clark ◽  
Parris T. Humphrey ◽  
Noah K. Whiteman
Keyword(s):  
Complete Genome ◽  
Hybrid Approach ◽  
Flow Cell ◽  
Pseudomonas Sp ◽  
Genome Sequences ◽  
Content Type ◽  
Oxford Nanopore ◽  
Cardamine Cordifolia

ABSTRACT Pseudomonas sp. strains 29A and 43A were originally isolated from the phyllosphere of individual plants of Cardamine cordifolia (Brassicaceae). Here, we report complete genome sequences for these two closely related strains, assembled using a hybrid approach combining Illumina paired-end reads and longer reads sequenced on an Oxford Nanopore MinION flow cell.

scholarly journals Complete Genome Sequences of Bordetella pertussis Clinical Isolate FR5810 and Reference Strain Tohama from Combined Oxford Nanopore and Illumina Sequencing

2018 ◽  
Vol 7 (19) ◽  
Author(s):  
Valérie Bouchez ◽  
Sarah Louise Baines ◽  
Sophie Guillot ◽  
Sylvain Brisse
Keyword(s):  
Clinical Isolate ◽  
Bordetella Pertussis ◽  
Complete Genome ◽  
Reference Strain ◽  
Sequence Data ◽  
Hybrid Approach ◽  
Genome Sequences ◽  
Content Type ◽  
Oxford Nanopore ◽  
Oxford Nanopore Technologies

Here, we describe the complete genome sequences of two Bordetella pertussis strains, FR5810, a clinical isolate recovered from the respiratory tract of an infant, and Tohama, a key reference strain for the species. Sequences were obtained using a hybrid approach combining Oxford Nanopore Technologies MinION and Illumina NextSeq 500 sequence data.

scholarly journals Complete Genome Sequence of Pseudomonas coronafaciens pv. oryzae 1_6

2020 ◽  
Vol 9 (3) ◽  
Author(s):  
David A. Baltrus ◽  
Meara Clark
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hybrid Approach ◽  
Flow Cell ◽  
Circular Chromosome ◽  
Content Type ◽  
Circular Plasmid ◽  
Oxford Nanopore

Pseudomonas coronafaciens pv. oryzae 1_6 was originally isolated as a phytopathogen of rice. Here, we report a complete genome sequence for this strain, containing a circular chromosome and one circular plasmid, assembled using a hybrid approach combining Illumina paired-end reads and longer reads sequenced on an Oxford Nanopore Flongle flow cell.

scholarly journals Complete Circular Genome Sequences of Three Bacillus cereus Group Strains Isolated from Positive Blood Cultures from Preterm and Immunocompromised Infants Hospitalized in France

2021 ◽  
Vol 10 (41) ◽  
Author(s):  
Mariem Ben Khedher ◽  
Fredrik Nindo ◽  
Alicia Chevalier ◽  
Stéphane Bonacorsi ◽  
Gregory Dubourg ◽  
...  
Keyword(s):  
Intensive Care ◽  
Bacillus Cereus ◽  
Complete Genome ◽  
Blood Cultures ◽  
Genome Sequences ◽  
Bacillus Cereus Group ◽  
Illumina Hiseq ◽  
Content Type ◽  
Long Reads ◽  
Oxford Nanopore

We report here the complete genome sequences of three Bacillus cereus group strains isolated from blood cultures from premature and immunocompromised infants hospitalized in intensive care units in three French hospitals. These complete genome sequences were obtained from a combination of Illumina HiSeq X Ten short reads and Oxford Nanopore MinION long reads.

scholarly journals Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Håkon Kaspersen ◽  
Thomas H. A. Haverkamp ◽  
Hanna Karin Ilag ◽  
Øivind Øines ◽  
Camilla Sekse ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Complete Genome ◽  
Flow Cell ◽  
Hybrid Assembly ◽  
Genome Sequences ◽  
Content Type ◽  
Short Reads ◽  
Long Reads ◽  
Long Read ◽  
Hybrid Assemblies

ABSTRACT In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.

scholarly journals Complete Genome Sequences of Pseudomonas alkylphenolica Neo and Variovorax sp. Strain CSUSB, Obtained in Undergraduate Microbiology Courses Using a Hybrid Assembly Approach

2020 ◽  
Vol 9 (9) ◽  
Author(s):  
Christopher Ne Ville ◽  
Dylan Enright ◽  
Ivan Hernandez ◽  
Jeremey Dodsworth ◽  
Paul Orwin
Keyword(s):  
Complete Genome ◽  
Hybrid Approach ◽  
Gram Negative Bacteria ◽  
Hybrid Assembly ◽  
Genome Sequences ◽  
Gram Negative ◽  
Content Type ◽  
Pesticide Tolerance

Two Gram-negative bacteria with a high G+C content were isolated from soil in undergraduate microbiology classes by enriching for low nutrient growth and neonicotinoid pesticide tolerance. DNA from these isolates was purified and sequenced using a hybrid approach. Here we report the genome sequences of Pseudomonas alkylphenolica strain Neo and Variovorax sp. strain CSUSB.

scholarly journals Complete Genome Sequences of Curtobacterium, Pantoea, Erwinia, and Two Pseudomonas sp. Strains, Isolated from Apple Flower Stigmas from Connecticut, USA

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Zhouqi Cui ◽  
Blaire Steven ◽  
Quan Zeng
Keyword(s):  
Complete Genome ◽  
Pseudomonas Sp ◽  
Bacterial Strains ◽  
Genome Sequences ◽  
Functional Characteristics ◽  
Content Type ◽  
Taxonomic Studies

ABSTRACT The genome sequences of 5 bacterial strains isolated from apple flower stigmas are reported. The strains represent species of Curtobacterium, Pantoea, and Erwinia and two species of Pseudomonas. These data will provide information for future taxonomic studies and information for investigating the metabolic and functional characteristics of apple flower-colonizing bacteria.

scholarly journals Complete Genome Sequence of Staphylococcus arlettae Strain P2, Isolated from a Laboratory Environment

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Hiroki Yu ◽  
Makoto Taniguchi ◽  
Kazuma Uesaka ◽  
Apirak Wiseschart ◽  
Kusol Pootanakit ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hybrid Approach ◽  
Illumina Miseq ◽  
Sequencing Data ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

Staphylococcus arlettae is one coagulase-negative species in the bacterial genus Staphylococcus. Here, we describe the closed complete genome sequence of S. arlettae strain P2, which was obtained using a hybrid approach combining Oxford Nanopore long-read and Illumina MiSeq short-read sequencing data.

scholarly journals Closed Genome Sequences of Clinical Neisseria gonorrhoeae Strains Obtained from Combined Oxford Nanopore and Illumina Sequencing

2019 ◽  
Vol 8 (9) ◽  
Author(s):  
Richard C. White ◽  
Manolito Torralba ◽  
Kelly Colt ◽  
Frank Harrison ◽  
Karrie Goglin ◽  
...  
Keyword(s):  
Neisseria Gonorrhoeae ◽  
Hybrid Approach ◽  
Illumina Miseq ◽  
The United States ◽  
Sequencing Data ◽  
Notifiable Disease ◽  
Genome Sequences ◽  
Content Type ◽  
Oxford Nanopore ◽  
Oxford Nanopore Technologies

Neisseria gonorrhoeae is the etiological agent of gonorrhea, the second most common notifiable disease in the United States. Here, we used a hybrid approach combining Oxford Nanopore Technologies MinION and Illumina MiSeq sequencing data to obtain closed genome sequences of nine clinical N. gonorrhoeae isolates.

scholarly journals Complete Genome Sequences of Four Putatively Antibiotic-Producing Bacteria Isolated from Soil in Arkansas, USA

2022 ◽  
Author(s):  
Ruth Plymale ◽  
Griffin Hopkins ◽  
Taylor Johnson ◽  
Taylor Savage ◽  
Danielle Schaal
Keyword(s):  
Complete Genome ◽  
Soil Bacteria ◽  
Hybrid Approach ◽  
Antimicrobial Compounds ◽  
Research Experience ◽  
Genome Sequences ◽  
Valuable Source ◽  
Oxford Nanopore ◽  
Complete Genomes ◽  
Oxford Nanopore Technologies

Soil bacteria can be a valuable source of antimicrobial compounds. Here, we report the complete genomes of four soil bacteria that were isolated by undergraduate microbiology students as part of a course-based research experience. These genomes were assembled using a hybrid approach combining paired-end Illumina reads with Oxford Nanopore Technologies MinION reads.

scholarly journals Complete Genome Sequences of Two Bioluminescent Vibrio campbellii Strains Isolated from Biofouling Communities in the Bay of Bengal

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Sophie M. Colston ◽  
Gregory A. Ellis ◽  
Seongwon Kim ◽  
Hemantha W. Wijesekera ◽  
Dagmar H. Leary ◽  
...  
Keyword(s):  
Bay Of Bengal ◽  
Complete Genome ◽  
Genome Sequences ◽  
Aquatic Animals ◽  
Content Type ◽  
Oxford Nanopore ◽  
Vibrio Campbellii

ABSTRACT Vibrio campbellii is a pathogen of aquatic animals and has been proposed as a bacterial partner in the formation of bioluminescent milky seas. We present here the complete genome sequences assembled from Illumina and Oxford Nanopore data for two bioluminescent Vibrio campbellii strains (BoB-53 and BoB-90) isolated from biofouled moorings in the Bay of Bengal.

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