scholarly journals Complete Genome Sequences of the Campylobacter fetus subsp. venerealis, Campylobacter lari subsp. concheus, Campylobacter sputorum bv. sputorum, and Campylobacter volucris Type Strains

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
William G. Miller ◽  
Emma Yee
Keyword(s):  
Complete Genome ◽  
Genomic Data ◽  
Clinical Samples ◽  
Genome Sequences ◽  
Content Type ◽  
Campylobacter Fetus ◽  
Fetus Subsp ◽  
Campylobacter Lari ◽  
Type Strains ◽  
Complete Genomic

Campylobacter spp. are recovered from a wide variety of sources, including birds, livestock, shellfish, and human clinical samples. We present here the complete genomic data for the type strains of Campylobacter fetus subsp. venerealis, Campylobacter lari subsp. concheus, Campylobacter sputorum bv. sputorum, and Campylobacter volucris.

scholarly journals Complete Genome Sequences of Two Acetylene-Fermenting Pelobacter acetylenicus Strains

2017 ◽  
Vol 5 (6) ◽  
Author(s):  
John M. Sutton ◽  
Shaun M. Baesman ◽  
Janna L. Fierst ◽  
Amisha T. Poret-Peterson ◽  
Ronald S. Oremland ◽  
...  
Keyword(s):  
Complete Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Pelobacter Acetylenicus ◽  
Type Strains

ABSTRACT Acetylene fermentation is a rare metabolism that was serendipitously discovered during C2H2-block assays of N2O reductase. Here, we report the genome sequences of two type strains of acetylene-fermenting Pelobacter acetylenicus, the freshwater bacterium DSM 3246 and the estuarine bacterium DSM 3247.

scholarly journals Complete Genomic Sequences of Three Salmonella enterica subsp. enterica Serovar Muenchen Strains from an Orchard in San Joaquin County, California

2020 ◽  
Vol 9 (13) ◽  
Author(s):  
Thao D. Tran ◽  
Steven Huynh ◽  
Craig T. Parker ◽  
Robert Hnasko ◽  
Lisa Gorski ◽  
...  
Keyword(s):  
Salmonella Enterica ◽  
Complete Genome ◽  
Genomic Sequences ◽  
Genome Sequences ◽  
Content Type ◽  
San Joaquin County ◽  
Complete Genomic

We present here the complete genome sequences of three Salmonella enterica subsp. enterica serovar Muenchen strains, LG24, LG25, and LG26. All three strains were isolated from almond drupes grown in an orchard in San Joaquin County, California, in 2016. These genomic sequences are nonidentical and will contribute to our understanding of S. enterica genomics.

scholarly journals Complete Genome Sequences of Mycoplasma anatis, M. anseris, and M. cloacale Type Strains

2018 ◽  
Vol 7 (12) ◽  
Author(s):  
Dénes Grózner ◽  
Barbara Forró ◽  
Kinga Mária Sulyok ◽  
Szilvia Marton ◽  
Zsuzsa Kreizinger ◽  
...  
Keyword(s):  
Complete Genome ◽  
Reproductive Disorders ◽  
Genome Sequences ◽  
Nervous Disease ◽  
Content Type ◽  
Type Strains

Mycoplasma anatis, M. anseris, and M. cloacale are pathogens of waterfowl. Airsacculitis, nervous disease, and reproductive disorders are the main symptoms in the affected flocks.

scholarly journals Complete Genomic Sequences of Two Salmonella enterica subsp. enterica Serogroup C2 (O:6,8) Strains from Central California

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Lisa Gorski ◽  
Steven Huynh ◽  
Kerry K. Cooper ◽  
Craig T. Parker
Keyword(s):  
Salmonella Enterica ◽  
Complete Genome ◽  
Environmental Samples ◽  
Additional Data ◽  
Genomic Sequences ◽  
Genome Sequences ◽  
Content Type ◽  
Central California ◽  
Complete Genomic

ABSTRACT Salmonella enterica subsp. enterica strains RM11060, serotype 6,8:d:−, and RM11065, serotype 6,8:−:e,n,z15, were isolated from environmental samples collected in central California in 2009. We report the complete genome sequences of these two strains. These genomic sequences are distinct and will provide additional data to our understanding of S. enterica genomics.

scholarly journals Complete Genome Sequence of Campylobacter fetus subsp. venerealis P4531 from a Rhesus Monkey

2021 ◽  
Vol 10 (42) ◽  
Author(s):  
Sung Guk Kim ◽  
Christine V. Summage-West ◽  
Lillie M. Sims ◽  
Steven L. Foley
Keyword(s):  
Rhesus Monkey ◽  
Genome Sequence ◽  
Macaca Mulatta ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequence Type ◽  
Content Type ◽  
Campylobacter Fetus ◽  
Fetus Subsp ◽  
Human Infections

Campylobacter fetus subsp. venerealis is associated with animal and human infections. We report the circularized 1.8-Mbp complete genome sequence of a multilocus sequence type 43 (MLST43) C. fetus subsp. venerealis isolate from a rhesus monkey ( Macaca mulatta ).

scholarly journals Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China

2020 ◽  
Vol 9 (48) ◽  
Author(s):  
Caroline Öhrman ◽  
Ingrid Uneklint ◽  
Linda Karlsson ◽  
Daniel Svensson ◽  
Mats Forsman ◽  
...  
Keyword(s):  
Francisella Tularensis ◽  
Causative Agent ◽  
Complete Genome ◽  
Genome Sequences ◽  
Cooling Systems ◽  
Content Type ◽  
Complete Sequences ◽  
Circular Chromosomes ◽  
Type Strains

ABSTRACT Near neighbors to the causative agent of tularemia, Francisella tularensis, isolated from diverse sources, have been reported in recent years. In this announcement, we present the complete sequences of circular chromosomes of one of the closest neighboring genera of Francisella (i.e., the type strains of Allofrancisella inopinata and Allofrancisella frigidaquae).

scholarly journals Complete Genome Sequences of the Arcobacter cryaerophilus Strains ATCC 43158T and ATCC 49615

2018 ◽  
Vol 7 (20) ◽  
Author(s):  
William G. Miller ◽  
Emma Yee ◽  
James L. Bono
Keyword(s):  
Complete Genome ◽  
Clinical Samples ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type

Arcobacter cryaerophilus was originally recovered from aborted bovine and porcine fetuses, but it has been subsequently isolated from meat, water, and human clinical samples. This study describes the complete whole-genome sequences of two A. cryaerophilus strains, ATCC 43158T (=A 169/BT =LMG 24291T) and ATCC 49615 (=CDC D2610 =LMG 10829).

scholarly journals Complete Genome Sequences of Four Extensively Drug-Resistant Acinetobacter baumannii Isolates from Thailand

2020 ◽  
Vol 9 (40) ◽  
Author(s):  
Peechanika Chopjitt ◽  
Thidathip Wongsurawat ◽  
Piroon Jenjaroenpun ◽  
Parichart Boueroy ◽  
Rujirat Hatrongjit ◽  
...  
Keyword(s):  
Acinetobacter Baumannii ◽  
Complete Genome ◽  
Sequence Type ◽  
Clinical Isolates ◽  
Drug Resistant ◽  
Genome Sequences ◽  
Content Type ◽  
Type Isolate ◽  
Resistant Genes ◽  
Extensively Drug Resistant

ABSTRACT Here, we report the complete genome sequences of four clinical isolates of extensively drug-resistant Acinetobacter baumannii (XDRAB), isolated in Thailand. These results revealed multiple antimicrobial-resistant genes, each involving two sequence type 16 (ST16) isolates, ST2, and a novel sequence type isolate, ST1479.

scholarly journals Complete Genome Sequences of Six Novel Macaca mulatta Papillomavirus Types Isolated from Genital Sites of Rhesus Monkeys in Hong Kong SAR, China

2018 ◽  
Vol 7 (22) ◽  
Author(s):  
Teng Long ◽  
Po Yee Wong ◽  
Wendy C. S. Ho ◽  
Robert D. Burk ◽  
Paul K. S. Chan ◽  
...  
Keyword(s):  
Hong Kong ◽  
Macaca Mulatta ◽  
Complete Genome ◽  
Rhesus Monkeys ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genomes ◽  
Hong Kong Sar

The complete genomes of six Macaca mulatta papillomavirus types isolated from genital sites of rhesus monkeys were characterized, and less than 72% identity with the complete L1 genes of known papillomaviruses was found. Macaca mulatta papillomavirus type 2 (MmPV2), MmPV3, and MmPV6 cluster into the genus Alphapapillomavirus, and MmPV4, MmPV5, and MmPV7 cluster into the genus Gammapapillomavirus.

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

2014 ◽  
Vol 64 (Pt_2) ◽  
pp. 316-324 ◽  
Author(s):  
Jongsik Chun ◽  
Fred A. Rainey
Keyword(s):  
Genomic Sequence ◽  
Sequence Data ◽  
Original Research ◽  
Rrna Gene ◽  
New Taxon ◽  
Genome Sequences ◽  
Microbial World ◽  
Content Type ◽  
Link Type ◽  
Type Strains

The polyphasic approach used today in the taxonomy and systematics of the Bacteria and Archaea includes the use of phenotypic, chemotaxonomic and genotypic data. The use of 16S rRNA gene sequence data has revolutionized our understanding of the microbial world and led to a rapid increase in the number of descriptions of novel taxa, especially at the species level. It has allowed in many cases for the demarcation of taxa into distinct species, but its limitations in a number of groups have resulted in the continued use of DNA–DNA hybridization. As technology has improved, next-generation sequencing (NGS) has provided a rapid and cost-effective approach to obtaining whole-genome sequences of microbial strains. Although some 12 000 bacterial or archaeal genome sequences are available for comparison, only 1725 of these are of actual type strains, limiting the use of genomic data in comparative taxonomic studies when there are nearly 11 000 type strains. Efforts to obtain complete genome sequences of all type strains are critical to the future of microbial systematics. The incorporation of genomics into the taxonomy and systematics of the Bacteria and Archaea coupled with computational advances will boost the credibility of taxonomy in the genomic era. This special issue of International Journal of Systematic and Evolutionary Microbiology contains both original research and review articles covering the use of genomic sequence data in microbial taxonomy and systematics. It includes contributions on specific taxa as well as outlines of approaches for incorporating genomics into new strain isolation to new taxon description workflows.

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