Theoretical study on the OH-initiated atmospheric reaction of N-methyl perfluorobutane sulfonamidoethanol (C4F9SO2N(CH3)CH2CH2OH)

2013 ◽  
Vol 91 (12) ◽  
pp. 1161-1167
Author(s):  
Juan Dang ◽  
Lei Ding ◽  
Xiaoyan Sun ◽  
Qingzhu Zhang ◽  
Wenxing Wang
Keyword(s):  
Reaction Mechanism ◽  
Degradation Products ◽  
Single Point ◽  
Basis Set ◽  
Stationary Points ◽  
Geometrical Parameters ◽  
Chemical Transformations ◽  
Point Energy ◽  
Range Transport ◽  
Perfluorinated Carboxylic Acids

N-methyl perfluorobutane sulfonamidoethanol (NMeFBSE), a new product of the 3M Company, is currently widely used in many countries and territories. It is prone to volatilize to the atmosphere where it can undergo long-range transport and chemical transformations. In this work, the reaction mechanism for the OH-initiated atmospheric oxidation of NMeFBSE was investigated. The geometrical parameters and vibrational frequencies of all of the stationary points were calculated at the MPWB1K level with the 6-31G+(d,p) basis set. Single-point energy calculations were carried out at the MPWB1K/6-311+G(3df,2p) level. The results indicate that the channel of the formation of C4F9 and HSO3N(CH3)CH2CH2OH resulting from OH addition to NMeFBSE and hydrogen abstractions from the −CH3 group in NMeFBSE are energetically favorable. The main degradation products include perfluorinated carboxylic acids (C3F7COOH, C2F5COOH, CF3COOH), HSO3N(CH3)CH2CH2OH, NMeFBSA (C4F9SO2NH(CH3)), C4F9SO2N(CH3)CH2CHO, and C4F9SO2N(CH3)CH2COOH. The reaction mechanism for the formation of NMeFBSA is reported for the first time. Using the atmospheric fate of NMeFBSE as a guide, it seems that N-methyl perfluorooctane sulfonamidoethanol (NMeFOSE) contributes to the ubiquity of perfluoroalkyl sulfonate and carboxylate compounds in the atmosphere.

THEORETICAL STUDY OF MECHANISM FOR THE ATMOSPHERIC REACTION CF3CHFO2 + NO

2013 ◽  
Vol 12 (01) ◽  
pp. 1250101 ◽  
Author(s):  
YA-NA WENG ◽  
XIAO-JUAN YAN ◽  
SHU-JIN LI
Keyword(s):  
Density Functional ◽  
Energy Surface ◽  
Single Point ◽  
Basis Set ◽  
Stationary Points ◽  
Cluster Method ◽  
Radical Pairs ◽  
Functional Theory ◽  
Point Energy ◽  
Optimized Geometries

The mechanism of the reaction CF3CHFO2 + NO was investigated using ab initio and density functional theory (DFT). The optimized geometries for all stationary points on the reaction energy surface were calculated using MP2 and B3LYP methods with the aug-cc-pVDZ basis set. Single-point energy calculations were performed using the coupled cluster method with single, double and perturbative triple configurations, CCSD(T). The most important energy minima on the potential energy surface (PES) were found corresponding to two conformers of the peroxynitrite association adducts, cis- CF3CHFOONO and trans- CF3CHFOONO , and the nitrate, CF3CHFONO2 . The radical pairs ( CF3CHFO + NO2 ) and the nitrate are formed through the breaking of the peroxy bond of trans- CF3CHFOONO and the rearrangement of cis- CF3CHFOONO , respectively. The nitrate can be decomposed to carbonylated species ( CF3CHO or CF3CFO ), nitryl fluoride (NO2F), nitrous acid (HONO), and radical pairs ( CF3CHFO + NO2 ), which are of potential atmospheric importance.

Theoretical study on NO3-initiated oxidation of acenaphthene in the atmosphere

2008 ◽  
Vol 86 (2) ◽  
pp. 129-137 ◽  
Author(s):  
Xiaohui Qu ◽  
Qingzhu Zhang ◽  
Wenxing Wang
Keyword(s):  
Product Information ◽  
Environmental Concern ◽  
Single Point ◽  
Basis Set ◽  
Orbital Theory ◽  
Night Time ◽  
Point Energy ◽  
Secondary Reactions ◽  
Favorable Reaction ◽  
High Level

Acenaphthene is widespread and toxic, and thus of substantial environmental concern. The reaction with NO3 radicals is an important atmospheric loss process of acenaphthene at night time. In this work, the mechanism for the NO3-initiated atmospheric oxidation reaction of acenaphthene has been studied using high level molecular orbital theory. Geometries of all the related species have been optimized at the MPWB1K level with the 6–31G(d,p) basis set. The single-point energy calculations have been carried out at the MPWB1K/6–311+G(3df,2p) level. The possible secondary reactions were also studied. Several energetically favorable reaction pathways were revealed for the first time.Key words: acenaphthene, NO3 radicals, reaction mechanism, product information, oxidation degradation.

scholarly journals Computational Modeling and Theoretical Calculations on the Interactions between Spermidine and Functional Monomer (Methacrylic Acid) in a Molecularly Imprinted Polymer

2015 ◽  
Vol 2015 ◽  
pp. 1-9 ◽  
Author(s):  
Yujie Huang ◽  
Qiujin Zhu
Keyword(s):  
Binding Energy ◽  
Methacrylic Acid ◽  
Molecularly Imprinted Polymer ◽  
Single Point ◽  
Basis Set ◽  
Stable Complex ◽  
Functional Monomer ◽  
Imprinted Polymer ◽  
Point Energy ◽  
Molecularly Imprinted

This paper theoretically investigates interactions between a template and functional monomer required for synthesizing an efficient molecularly imprinted polymer (MIP). We employed density functional theory (DFT) to compute geometry, single-point energy, and binding energy (ΔE) of an MIP system, where spermidine (SPD) and methacrylic acid (MAA) were selected as template and functional monomer, respectively. The geometry was calculated by using B3LYP method with 6-31+(d) basis set. Furthermore, 6-311++(d, p) basis set was used to compute the single-point energy of the above geometry. The optimized geometries at different template to functional monomer molar ratios, mode of bonding between template and functional monomer, changes in charge on natural bond orbital (NBO), and binding energy were analyzed. The simulation results show that SPD and MAA form a stable complex via hydrogen bonding. At 1 : 5 SPD to MAA ratio, the binding energy is minimum, while the amount of transferred charge between the molecules is maximum; SPD and MAA form a stable complex at 1 : 5 molar ratio through six hydrogen bonds. Optimizing structure of template-functional monomer complex, through computational modeling prior synthesis, significantly contributes towards choosing a suitable pair of template-functional monomer that yields an efficient MIP with high specificity and selectivity.

Atmospheric oxidation mechanism of polyfluorinated sulfonamides — A quantum chemical and kinetic study

2013 ◽  
Vol 91 (6) ◽  
pp. 472-478 ◽  
Author(s):  
Xiaoyan Sun ◽  
Lei Ding ◽  
Qingzhu Zhang ◽  
Wenxing Wang
Keyword(s):  
Rate Constants ◽  
Density Functional ◽  
Single Point ◽  
Oxidation Mechanism ◽  
Basis Set ◽  
Atmospheric Oxidation ◽  
Oh Radicals ◽  
Oh Radical ◽  
Orbital Theory ◽  
Point Energy

Polyfluorinated sulfonamides (FSAs, F(CF2)nSO2NR1R2) are present in the atmosphere and may serve as the source of perfluorocarboxylates (PFCAs, CF3(CF2)nCOO–) in remote locations through long-range atmospheric transport and oxidation. Density functional theory (DFT) molecular orbital theory calculations were carried out to investigate OH radical-initiated atmospheric oxidation of a series of sulfonamides, F(CF2)nSO2NR1R2 (n = 4, 6, 8). Geometry optimizations of the reactants as well as the intermediates, transition states, and products were performed at the MPWB1K level with the 6-31G+(d,p) basis set. Single-point energy calculations were carried out at the MPWB1K/6-311+G(3df,2p) level of theory. The OH radical-initiated reaction mechanism is given and confirms that the OH addition to the sulfone double bond producing perfluoroalkanesulfonic acid directly cannot occur in the general atmosphere. Canonical variational transition-state (CVT) theory with small curvature tunneling (SCT) contribution was used to predict the rate constants. The overall rate constants were determined, k(T) (N-EtFBSA + OH) = (3.21 × 10−12) exp(–584.19/T), k(T) (N-EtFHxSA + OH) = (3.21 × 10−12) exp(–543.24/T), and k(T) (N-EtFOSA + OH) = (2.17 × 10−12) exp(–504.96/T) cm3 molecule−1 s−1, over the possible atmospheric temperature range of 180–370 K, indicating that the length of the F(CF2)n group has no large effect on the reactivity of FSAs. Results show that the atmospheric lifetime of FSAs determined by OH radicals will be 20–40 days, which agrees well with the experimental values (20–50 days), 20 thus they may contribute to the burden of perfluorinated pollution in remote regions.

Kinetics and mechanism for chlorine-initiated atmospheric oxidation of ethyl formate

2014 ◽  
Vol 92 (7) ◽  
pp. 598-604 ◽  
Author(s):  
Yan Zhao ◽  
Xiaomin Sun ◽  
Wenxing Wang ◽  
Laixiang Xu
Keyword(s):  
Rate Constants ◽  
Density Functional ◽  
Single Point ◽  
Oxidation Mechanism ◽  
Density Functional Theory Method ◽  
Ethyl Formate ◽  
Stationary Points ◽  
Atmospheric Conditions ◽  
Point Energy ◽  
Rearrangement Reaction

The chlorine-initiated reaction mechanism of ethyl formate in the atmosphere was investigated using the density functional theory method. The geometry parameters and frequencies of all of the stationary points were calculated at the B3LYP/ 6-31G(d,p) level. The single-point energy calculations were carried out at different levels, including MP2/6-31G(d), MP2/6-311++G(d,p), and CCSD(T)/6-31G(d). A detailed oxidation mechanism is provided and discussed. Present results show that α-ester rearrangement reaction and the O2 direct abstraction from IM6 (HC(O)OCH(O)CH3) are the more favorable pathway and are competitive. The 1,4-H shift isomerization of IM6 proved to be feasible under general atmospheric conditions. The decomposition of IM18 (CH3CH2OC(O)O) is favorable both thermodynamically and kinetically. Canonical variational transition theory with small-curvature tunneling correction was employed to predict the rate constants. The overall rate constant of ethyl formate at 298 K is 8.63 × 10−12 cm3 molecule−1 s−1. The Arrhenius equations of rate constants at the temperature range of 200–380 K were fitted.

scholarly journals Computational Study of the Dissociation Reactions of Secondary Ozonide

Atmosphere ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 100 ◽  
Author(s):  
Mansour H. Almatarneh ◽  
Shefa’ F. Alrebei ◽  
Mohammednoor Altarawneh ◽  
Yuming Zhao ◽  
Abd Al-Aziz Abu-Saleh
Keyword(s):  
Barrier Height ◽  
Computational Study ◽  
Reaction Pathway ◽  
Single Point ◽  
Water Dimer ◽  
Basis Set ◽  
Basis Sets ◽  
Water Molecules ◽  
Point Energy ◽  
Secondary Ozonide

This contribution presents a comprehensive computational study on the reactions of secondary ozonide (SOZ) with ammonia and water molecules. The mechanisms were studied in both a vacuum and the aqueous medium. All the molecular geometries were optimized using the B3LYP functional in conjunction with several basis sets. M06-2X, APFD, and ωB97XD functionals with the full basis set were also used. In addition, single-point energy calculations were performed with the G4MP2 and G3MP2 methods. Five different mechanistic pathways were studied for the reaction of SOZ with ammonia and water molecules. The most plausible mechanism for the reaction of SOZ with ammonia yields HC(O)OH, NH3, and HCHO as products, with ammonia herein acting as a mediator. This pathway is exothermic and exergonic, with an overall barrier height of only 157 kJ mol−1 using the G3MP2 method. All the reaction pathways between SOZ and water molecules are endothermic and endergonic reactions. The most likely reaction pathway for the reaction of SOZ with water involves a water dimer, in which the second water molecule acts as a mediator, with an overall barrier height of only 135 kJ mol−1 using the G3MP2 method. Solvent effects were found to incur a significant reduction in activation energies. When the second H2O molecule acts as a mediator in the reaction of SOZ with water, the barrier height of the rate-determining step state decreases significantly.

Quantum chemical study on the atmospheric photooxidation of ethyl acetate

2014 ◽  
Vol 92 (9) ◽  
pp. 814-820 ◽  
Author(s):  
Yan Zhao ◽  
Xiaomin Sun ◽  
Wenxing Wang ◽  
Laixiang Xu
Keyword(s):  
Acetic Anhydride ◽  
Ethyl Acetate ◽  
Density Functional ◽  
Single Point ◽  
Quantum Chemical Study ◽  
Density Functional Theory Method ◽  
Basis Set ◽  
Oh Radicals ◽  
Point Energy ◽  
Rearrangement Reaction

The mechanism for OH radical initiated atmospheric photoxidation reaction of ethyl acetate was carried out by using the density functional theory method. Geometries have been optimized at the B3LYP level with a standard 6-31G(d,p) basis set. The single-point energy calculations have been performed at the MP2/6-31G(d), MP2/6-311++G(d,p), and CCSD(T)/6-31G(d) levels, respectively. All of the possible degradation channels involved in the oxidation of ethyl acetate by OH radicals have been presented and discussed. Among the five possible hydrogen abstraction pathways of the reaction of ethyl acetate with OH radicals, the hydrogen abstractions from the C1–H3 and C2–H5 bonds are the dominant reaction pathways due to the low potential barriers and strong exothermicity. The β-ester rearrangement of IM6 is energetically favorable but is not expected to be important. The α-ester rearrangement reaction and O2 direct abstraction from IM17 are the more favorable pathways and are strongly competitive. In addition, the α-ester rearrangement reaction is confirmed to be a one-step process. Acetic acid, formic acetic anhydride, acetoxyacetaldehyde, and acetic anhydride are the main products for the reaction of ethyl acetate with OH radicals.

Theoretical study on the reaction mechanism of vinyl acetate with OH radicals in the atmosphere

2013 ◽  
Vol 91 (4) ◽  
pp. 241-247 ◽  
Author(s):  
Yan Zhao ◽  
Haitao Sun ◽  
Renjun Wang ◽  
Fei Gao
Keyword(s):  
Vinyl Acetate ◽  
Potential Energy Surfaces ◽  
Density Functional ◽  
Theoretical Study ◽  
Single Point ◽  
Density Functional Theory Method ◽  
Basis Sets ◽  
Stationary Points ◽  
Oh Radicals ◽  
Point Energy

The reaction mechanisms of vinyl acetate with OH radicals in the atmosphere have been studied using the density functional theory method. The geometry parameters and frequencies of all of the stationary points are calculated at the MPWB1K level with the 6-31G(d,p) basis sets. The single-point energy calculations are carried out at the MPWB1K/6-311+G(3df,2pd) level. The detailed profiles of the potential energy surfaces for the reactions are constructed. Two OH addition and three H abstraction reaction pathways are considered for the reaction of vinyl acetate with OH radicals. The theoretical study shows that the most energetically favorable isomer is that of OH addition to the terminal carbon positions (C1 atom). The α-ester rearrangement, which is characteristic of ester oxidation processes, is confirmed to be thermodynamically and kinetically favorable. The main products of the OH-initiated atmospheric oxidation of vinyl acetate are formaldehyde, formic acetic anhydride, and acetic acid.

COMPUTATION OF LARGE SYSTEMS WITH AN ECONOMIC BASIS SET: AB INITIO CALCULATIONS OF BIOLOGICAL NUCLEIC ACID BASE PAIRS

2006 ◽  
Vol 05 (spec01) ◽  
pp. 411-420 ◽  
Author(s):  
WENJIE FAN ◽  
RUIQIN ZHANG
Keyword(s):  
Nucleic Acid ◽  
Single Point ◽  
Basis Set ◽  
Basis Sets ◽  
Mulliken Charge ◽  
Acid Base ◽  
Base Pairs ◽  
Point Energy ◽  
Economic Basis ◽  
Nucleic Acid Base

We show that an economic basis set, in which the polarization functions are considered only for oxygen and nitrogen atoms of strong electronegativity, can be used to determine reliable structures of nucleic acid base pairs. Mulliken charge analysis and the HOMO-LUMO gap in single-point energy calculations using standard basis sets on the geometric structures optimized with the economic basis set found reasonable agreements with the ones of standard calculations. This study is expected to provide a general guideline for basis set selection in the computation of large biological systems being performed with considerable high accuracy, using a low cost computation resource.

scholarly journals Probing the mechanism of xanthine oxidase and 2-amino xanthine: an implication of energy, charge bond order and wave function.

2018 ◽  
Vol 6 (1) ◽  
pp. 95
Author(s):  
Mamaru Bitew
Keyword(s):  
Wave Function ◽  
Xanthine Oxidase ◽  
Single Point ◽  
Energy Charge ◽  
Dft Method ◽  
Theoretical Work ◽  
Electronic Energy ◽  
Basis Set ◽  
Energy Output ◽  
Point Energy

Xanthine oxidase (XO) is an important molybdenum-containing enzyme catalyzing the hydroxylation of hypoxanthine to xanthine and xanthine to uricacid. The mechanistic action by which xanthine oxidase oxidizes purine derivatives is not well understood. A better understanding of the overall mechanism is supposed to enhance our ability to control the metabolic properties of potential drug molecules metabolized by this enzyme. In this work a model substrate, 2-Amino Xanthine has been used to study the mechanistic action of the enzyme. For this reason, the present theoretical work was intended to probe a unified mechanism for the oxidation of 2-Amino Xanthine by xanthine oxidase. Parameters like total electronic energy, Mulliken atomic charges, wave functions, and percent contribution of chemical fragments were generated using a DFT method employing B3LYP level of theory with 6-31G(d',p') basis set for nonmetals and LanL2DZ basis set for molybdenum. AOmix software package that employs single point energy output as an input file was employed for wave function and percent fragment analysis. From these result new reaction intermediates and plausible reaction mechanism root has been reported for reductive and oxidative half reaction using 2-Amino Xanthine as model substrate. In this work it can be concluded that a stepwise mechanistic route with hydrogen bonding reaction complex and active site resemble very rapid Mo (V) intermediate is most plausible.     

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