Theoretical investigation of five-coordinated manganese(III) oxophlorin with different axial ligands at various spin states using different DFT methods

The Mn(III)-oxophlorin complexes with imidazole, pyridine and t-butylcyanide as axial ligands have been studied using B3LYP, Bv86p, and M06-2X methods. All of the possible optimized geometries are specified, while the M06-2X is employed. Results obtained show that the isomers of Mn(III)-oxophlorin with imidazole or pyridine are the most stable at quintet state, compared to singlet and triplet spin states. Besides, there are two and four [Formula: see text]-electrons on manganese in each of these complexes at triplet and quintet states, respectively. Also, Mn(III)-oxophlorin with t-butylcyanide as axial ligand is only stable at singlet state. Non-specific solvent effects show that dispersion and London forces have the basic role in stability of complexes in a solvent. Note that latter interactions can occur in medium with dielectric constant ([Formula: see text]) of [Formula: see text]8, such as [Formula: see text] for position of oxophlorin in heme oxygenase enzyme. NBO analysis show that there is no degeneracy between d orbitals of Mn in the five-coordinated Mn(III)-oxophlorin at singlet and triplet spin states, but two d orbitals of manganese are degenerated in latter complexes at quintet state. Such degeneracy of d orbitals is observed in a complex with square pyramid structure. Then five-coordinated Mn(III)-oxophlorin with imidazole or pyridine is the most stable at quintet spin state, because of its geometry corresponding to square pyramid configuration of atoms. Also, nonbounding interaction between Mn and the ring of oxophlorin or Mn and ligand are more effective in Mn(III)-oxophlorin with imidazole as axial ligand, compared to pyridine and t-butylcyanide.

Asymmetric Concentric Microring Resonator Label-Free Biosensors

A study of label-free silicon nitride asymmetric double-microring resonators is presented. The use of highly accurate 3D vector modal techniques permits an extensive exploration of the parameter space defining the architecture of the proposed device in the search for optimal geometries and reaching configurations not addressed in previous studies that had been limited to symmetrical configurations. Asymmetry, on the other hand, permits to access resonances that exploit the radiation-quenching properties of the structure in an optimal way. The analysis presented also includes the effect of absorption in the sensor aqueous cladding that is generally omitted. The results of the numerical survey indicate that the optimized geometries bring about a substantive performance improvement at small microring radii that are impractical for more conventional single-ring geometries due to the high radiation losses. Therefore, lower footprint devices, and a larger scale of integration, can be attained with the proposed structure.

Reactivity of O-Drug Bond in some Suggested Voltarine Carriers: Semiempirical and ab Initio Methods

In this work, the possibility to use new suggested carriers (D= Aspirin, Ibuprofen, Paracetamol, Tramal) is discussed for diclofenac drug (voltarine) by using quantum mechanics calculations. The calculation methods (PM3) and (DFT) have been used for determination the reaction path of (O-D) bond rupture energies. Different groups of drugs as a carrier for diclofenac prodrugs (in a vacuum) have been used; at their optimized geometries. The calculations included the geometrical structure and some of the physical properties, in addition to the toxicity, biological activity, and NLO properties of the prodrugs, investigated using HF method. The calculations were done by Gaussian 09 program. The comparison was made for total energies of reactants, activation energies, and transition states to final products. The suggested prodrugs aim to improve the diclofenac carrier's properties and obtain new alternatives for the approved carriers theoretically.

Simulation Study of Structural and Electronic Properties for Adducts complexes of Bis(Acetylacetonato)oxoVandium (IV) with 4-(Para-substituted phenyl)-1,2,3-Selenadiazole

A series of 4-(para-substituted phenyl)-1,2,3-selenadiazole adducts of [VO(acac)2] were studied by density functional theory (DFT) calculations. The 4-(para-substituted phenyl)-1,2,3-selenadiazole molecules have been selected to be bound with vanadium atom in [VO(acac)2] through Se, N2 and N3. The resulting adducts have been investigated in two geometries (cis and trans) in order to show the effect of such structural change on the electronic properties of the studied adducts. The optimized geometries, (binding and reorganization) energies and the spatial distribution of the highest molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) of the adducts are presented and discussed.

1 H/ 13 C chemical shift calculations for biaryls: DFT approaches to geometry optimization

Twelve common density functional methods and seven basis sets for geometry optimization were evaluated on the accuracy of 1 H/ 13 C NMR chemical shift calculations for biaryls. For these functionals, 1 H shifts calculations for gas phase optimized geometries were significantly less accurate than those for in-solution optimized structures, while 13 C results were not strongly influenced by geometry optimization methods and solvent effects. B3LYP, B3PW91, mPW1PW91 and ω B97XD were the best-performing functionals with lowest errors; among seven basis sets, DGDZVP2 and 6-31G(d,p) outperformed the others. The combination of these functionals and basis sets resulted in high accuracy with CMAE min = 0.0327 ppm (0.76%) and 0.888 ppm (0.58%) for 1 H and 13 C, respectively. The selected functionals and basis set were validated when consistently producing optimized structures with high accuracy results for 1 H and 13 C chemical shift calculations of two other biaryls. This study highly recommends the IEFPCM/B3LYP, B3PW91, mPW1PW91 or ω B97XD/DGDZVP2 or 6-31G(d,p) level of theory for the geometry optimization step, especially the solvent incorporation, which would lead to high accuracy 1 H/ 13 C calculation. This work would assist in the fully structural assignments of biaryls and provide insights into in-solution biaryl conformations.

Adjoint Optimization of Film Cooling Hole Geometry

This paper is part of a two paper series on optimization methods for film cooling which seek to address the limitations of experimental optimization by utilizing advances in RANS based CFD to quickly optimize film cooling hole geometries. In the companion paper [1] on parametric optimization the optimum hole was experimentally demonstrated to have > 40% improvement in spatially averaged effectiveness compared to a baseline 7-7-7 hole, and was developed by leveraging RANS as a proxy for experimental data. In this paper adjoint based optimization was used to develop unique film cooling hole geometries. Adjoint optimization moves beyond using RANS as a proxy for experimental data instead utilizing the derivatives available in RANS to fully optimize the geometry of a shaped film cooling hole. The resulting geometry was experimentally validated to further increase performance by over 80% compared to the baseline 7-7-7 shaped hole. The study also show that further increases in performance are predicted when expanding the optimization target region. Furthermore, these new optimized geometries are readily manufactured by Additive Manufacturing (AM) processes and significantly less time consuming to generate than an equivalent parametrically optimized hole shape. These methods provide the tools necessary to fully utilize the large design space offered by AM and will be dramatically shift the future of film cooling hole design.

Analytical Gradients for Core-Excited States in the Algebraic Diagrammatic Construction (ADC) Framework

Here we present a derivation of the analytical expressions required to determine nuclear gradients for core-excited states at the core-valence separated algebraic diagrammatic construction (CVS-ADC) theory level. Analytical gradients up to and including the extended CVS-ADC(2)-x order have been derived and implemented into a Python module, adc_gradient. The gradients were used to determine core-excited state optimized geometries and relaxed potential energy surfaces for the water, formic acid, and benzne molecules. <br>

Analytical Gradients for Core-Excited States in the Algebraic Diagrammatic Construction (ADC) Framework

Here we present a derivation of the analytical expressions required to determine nuclear gradients for core-excited states at the core-valence separated algebraic diagrammatic construction (CVS-ADC) theory level. Analytical gradients up to and including the extended CVS-ADC(2)-x order have been derived and implemented into a Python module, adc_gradient. The gradients were used to determine core-excited state optimized geometries and relaxed potential energy surfaces for the water, formic acid, and benzne molecules. <br>

Fluorescent Sensors For Hg2+ and Cu2+ Based On Condensation Products of 4H-1,2,4 Triazole-4-Amine And Carboxylated Benzoic Acids

Mercury (Hg) causes serious health issues in its all forms. Deficiency as well as excess of copper ion (Cu2+) in human body is hazardous. A series of four compounds have been derived from carboxylated benzoic acids (benzoic acid, isophthalic acid, terephthalic acid and phthalic acid) and 4H-1,2,4 triazole-4-amine and characterized. Fluorescencce detection of Hg2+ was recorded by the derivates with benzoic acid and isophthalic acid while the derivatives of terephthalic acid and phthalic acid detect Cu2+ by fluorescence “off” mode. Metal ions like Li+, Na+, K+, Zn2+, Al3+, Mg2+, Mn2+, Co2+, Ni2+, Cu2+, Cd2+, Pb2+ and Hg2+ found not to interfere. The stoichiometry of binding is 1:1 for the benzoic acid derivative with Hg2+ while it is 1:2 for the other three derivatives. The binding constants are ca. 10− 4.5 between the sensors and Hg2+ or Cu2+ and detection limits are around 10− 5.5 M. DFT calculation provided optimized geometries of the sensors and confirmed the stoichiometry of binding with Hg2+/Cu2+.