The biosynthesis of antibiotic F-244 in Fusarium sp. ATCC 20788: origin of the carbon, hydrogen, and oxygen atoms

1995 ◽  
Vol 73 (1) ◽  
pp. 1-5 ◽  
Author(s):  
Endang Saepudin ◽  
Paul Harrison

Biosynthetic incorporation experiments were performed with carbon-13 labelled precursors including sodium [1-13C]-, [2-13C], and [1,2-13C2]-acetate as well as [methyl-13C]methionine into antibiotic F-244 (1) in growing cultures of Fusarium sp. ATCC 20788. After conversion to the methyl ester 2, analysis by NMR showed that the carbon skeleton of 1 derives from seven intact acetate units; the remaining four carbons are from methionine. Hence, the pathway is similar to that reported for 1 in Scopulariopsis. The biogenesis of the hydrogen atoms in 1 was also investigated. Incorporation of sodium [1-13C, 18O2]acetate gives 2, which exhibits 18O-induced isotope shifts at C-1 and C-3. The labelling pattern is consistent with formation of the β-lactone ring by nucleophilic attack of a C-3 hydroxyl group in the nascent polyketide precursor onto the C-1 carbonyl. Keywords: biosynthesis, polyketide, F-244, β-lactone, Fusarium.

1965 ◽  
Vol 18 (9) ◽  
pp. 1451 ◽  
Author(s):  
RA Eade ◽  
LP Rossler ◽  
HV Simes ◽  
JJH Simes

Ebelin lactone, formed by hydrolysis of a saponin, is a carbotricyclic triterpene with a novel carbon skeleton. Chemical evidence leading to the structure (I) for ebelin lactone is now presented in detail. Ebelin lactone, C30H46O3, possesses a secondary, equatorial hydroxyl group shown to be the 3β-hydroxyl group located in a typical triterpene ring A (III). Spectroscopic and chemical results show that the remaining two oxygen atoms are present in a γ-lactone ring (XIII). The side- chain has been subjected to oxidative degradations; an examination of the volatile fragments, and the isolation and characterization of the non-volatile C22 octanor compounds indicate that the side-chain has one of four possible structures (XVII). Structure (XVIII) is preferred on biogenetic grounds. The side-chain is attached equatorially; the conjugated triene system is allotted the trans arrangement of the double bonds on spectroscopic evidence. The biogenesis of ebelin lactone is discussed.


Author(s):  
Jurica Novak ◽  
Maria A. Grishina ◽  
Vladimir A. Potemkin

: In this letter the newly introduced approach based on the radial distribution function (RDF) weighted by the number of va-lence shell electrons is applied for a series of HIV-1 protease enzyme and its complexes with inhibitors to evaluate the influ-ence of hydrogen atoms on the performance of the model. The multiple linear regression method was used for the selection of the relevant descriptors. Two groups of residues having dominant contribution to the RDF descriptor are identified as relevant for the inhibition. In the first group are residues like Arg8, Asp25, Thr26, Gly27 and Asp29, which establish direct interaction with the inhibitor, while the second group consists of the amino acids at the interface of the two homodimer sub-units or with the solvent. The crucial motif pointed out by our approach as the most important for inhibition of the enzyme’s activity and present in all inhibitors is hydroxyl group that establish hydrogen bond with Asp25 side chain. Additionally, the comparison to the model without hydrogen showed that both models are of similar quality, but the downside of the current model is the need for the determination of residues’ protonation states.


The diquinones have been but little investigated, and as they contain two condensed highly active quinonid systems it is to be anticipated that they should be capable of interesting intramolecular reactions. When heated to 210-215º, 4 : 4'-dimethoxydiquinone is rapidly converted into a red crystalline isomeride (yield, 90%), soluble in alkali with an intense blue colour, and yielding a mono-acetate indicating the occurrence of a free hydroxyl group. Two hydrogen atoms are taken up on reduction, and the phenolic product yields a triacetate and a trimethyl ether. It follows that of the four carbonyl oxygens of 4 : 4'-dimethoxydiquinone, one has been converted into a hydroxyl group, and another which does not exhibit any functional activity, is probably present as ethereal oxygen. These results led to formula (III) as representing the product of rearrangement.


2019 ◽  
Vol 85 (3) ◽  
pp. 3-19
Author(s):  
Polina Borovyk ◽  
Mariia Litvinchuk ◽  
Anton Bentya ◽  
Svitlana Orysyk ◽  
Yurii Zborovskiy ◽  
...  

The possibility of using N-allylcarbothioamide derivatives as well as products of their iodine- and proton-initiated electrophilic heterocyclizations as chelating agents in complexation reactions with Zn(II) and Ag(I) ions is shown. Processing of the obtained experimental data showed that N-allythioamides of pyrimidinyl (cyclohexenyl) carboxylic acids H2L1 – H2L3 and their proton- and iodo-cyclization products HL4, HL5 containing four nucleophilic reaction centers (two oxygen atoms of the carbonyl and hydroxyl groups and N-, S-carbothioamide groups or N-atoms of the dihydrothiazole moiety) are polydentate ligands capable of coordinating with metal ions to form stable six-membered chelate metallocycles. A series of new chelating mono-, bi- and polynuclear complexes Zn(II) and Ag (I) of the composition [Zn2L1,32]n, [Zn2(HL1-3)2(CH3COO)2], [Ag2(HL1,3)2]n, [Zn(HL1-3)2], [Ag(H2L3)2NO3], [Zn(HL4,5)2], K[Ag(HL4,5)2] were synthesized and isolated in solid state. Their molecular structure was established by methods of elemental chemical analysis, NMR 1H, IR and UV-Vis spectroscopy. At a ratio of M:L 1:2, complexes were isolated in which two ligand molecules H2L1 − H2L3 are coordinated to the metal ion by the sulfur atoms of the carbothioamide group and the oxygen of the mono-deprotonated hydroxyl group. It was established that the products of the proton-/iodocyclization HL4, HL5 in the complex formation pass into the thione tautomeric form with coordination through the oxygen atoms of the deprotonated hydroxyl group and nitrogen atoms of the dihydrothiazole heterocycle. At M:L 1:1, binuclear or polynuclear coordination compounds are formed. It was shown that polymerisation in complexes [Zn2L1,32]n and [Ag2(HL1,3)2]n is due to the formation of Zn−(O2SN)−Zn and Ag−O−Ag polymer chains. Investigation of the solubility of the resulting complexes showed that the polymer complexes are weakly soluble or insoluble in DMSO, DMF, while the mononuclear are soluble in methanol, as well as in water.


Author(s):  
O. K. Karimov ◽  
G. Y. Kolchina ◽  
G. A. Teptereva ◽  
I. A. Chetvertneva ◽  
E. K. Karimov ◽  
...  

Objectives. Cinnamic acid derivatives belong to a large class of phenolic compounds, which are widely distributed in plants and have high potential for use in the medical and industrial fields. They have various useful practical properties, e.g., antioxidant, anti-inflammatory, antiplatelet, and anti-melanogenic properties. Hydroxycinnamic acids are of particular interest as phenylpropanoids, which are the starting compounds of lignin. The aim of this work was to study the electronic structure and analyze the reactivity of the simplest representatives of phenylpropanoids formed during the biosynthesis of the coumaric (p-hydroxycinnamic), caffeic (3,4-dihydroxycinnamic), ferulic (3-methoxy-4-hydroxycinnamic), sinapic (3,5-dimethoxy-4- hydroxycinnamic), and 3,4-dimethoxycinnamic acids. These acids are the biogenetic precursors of most other phenolic compounds (coumarins, melanins, lignins, and flavonoids) and are found in almost all higher plants.Methods. Calculations with full optimization of the geometric parameters were performed using the original Hartree–Fock theory and hybrid density functional method. All calculations were performed using the Firefly program. Results. A comparative quantum chemical calculation of the geometric parameters of hydroxycinnamic acid molecules was conducted via two methods, and the values of the charges on atoms according to Mulliken were determined. It was found that with the addition of hydroxyl and methoxy substituents at the meta and para positions relative to the carboxyl fragment, the electron density shifts toward the benzene ring, and the symmetry of the molecule decreases. Additionally, in these structures, there is π,π-conjugation of the carboxyl fragment of the –СН=СНСООН molecule with the aromatic ring, which significantly affects the geometric configuration of the molecule. The maximum positive charge is concentrated on the C9 atom, while the maximum negative charge is on the oxygen atoms belonging to the methoxy substituents and the hydroxyl group, which confirms the role of oxygen atoms in the chemical transformations of acids. Conclusions. Two different methods were used to calculate the geometric, electronic, and energy parameters and electrophilicity indices of the studied hydroxycinnamic acids in the gas phase. The obtained values were consistent (within the limits of error) with the experimental data as well as the results described in earlier works’ calculations by other methods.


1956 ◽  
Vol 34 (9) ◽  
pp. 1302-1314 ◽  
Author(s):  
D. L. Vincent ◽  
C. B. Purves

n-Octadecyl S-methyl xanthate, m.p. 38–39°, and n-hexadecyl S-methyl xanthate, m.p. 28–28.5°, were prepared for the first time, and were used to study the behavior of the S-methyl xanthate group toward reagents commonly used in research on carbohydrates. Although stable to some conditions of acetylation, hydrolysis, and methanolysis, the S-methyl xanthate group was destroyed by all methylating agents tried, with the exception of nitrosomethylurethane. The latter reagent converted a sodium xanthate salt in high yield to the S-methyl ester. Octadecyl and hexadecyl S-methyl xanthates when oxidized with hydrogen peroxide yielded crystalline substances of composition C20H40O4S2 and C18H36O4S2, respectively, whose structures were not determined. These substances each contained three additional oxygen atoms. Various attempts to estimate the S-methyl xanthate group by oxidation with bromine or periodic acid, or by reduction to methyl iodide, were unsuccessful.


2000 ◽  
Vol 55 (6) ◽  
pp. 495-498 ◽  
Author(s):  
Katerina E. Gubina ◽  
Vladimir A. Ovchynnikov ◽  
Vladimir M. Amirkhanov ◽  
Viktor V. Skopenkoa ◽  
Oleg V. Shishkinb

N,N′-Tetramethyl-N"-benzoylphosphoryltriamide (I) and dimorpholido-N-benzoylphosphorylamide (II), and their sodium salts Nal, Nall were synthesized and characterized by means of IR and 1H, 31P NMR spectroscopy. The structures of I, II were determined by X-ray diffraction: I monoclinic, space group P2i/c with a = 10.162(3), b= 11.469(4), c = 12.286(4) Å , β = 94.04°, V = 1428.4(8) A 3, Z = 4, p(calcd) = 1.187 g/cm3; II monoclinic, space group C2/c with a = 15.503(4), b = 10.991(3), c = 22.000(6) Å, β = 106.39°, V = 3596.3(17) Å3, Z = 8, p(calcd.) = 1.253 g/cm3. The refinement of the structures converged at R = 0.0425 for I, and R = 0.068 for II. In both structures the molecules are connected into centrosymmetric dimers via hydrogen bonds formed by the phosphorylic oxygen atoms and hydrogen atoms of amide groups.


1975 ◽  
Vol 53 (21) ◽  
pp. 3175-3187 ◽  
Author(s):  
Don C. DeJongh ◽  
Denis C. K. Lin ◽  
Pierre LeClair-Lanteigne ◽  
Denis Gravel

An interesting rearrangement has been observed in the mass spectra of a series of N-benzoyl-2-hydroxyalkylamines. The hydrogen atom of the hydroxyl group is transferred to the N-benzoyl portion of the molecular ion and the bond between positions 1 and 2 in the N-alkyl group is cleaved. A rearrangement ion, observed at m/e 135, is formed along with a neutral aldehyde or ketone. When the hydroxylic hydrogen is replaced by a trimethylsilyl substituent, the latter group is transferred with comparable efficiency. Differences in the relative importance of this rearrangement in the mass spectra of a series of related compounds with decreasing substitution at position 2, have been explained by differences in the stabilities of the neutral molecules formed along with m/e 135 and by the occurrence of a double hydrogen rearrangement which competes if hydrogen atoms are present in a relationship gamma and delta to the carbonyl group.


1937 ◽  
Vol 15b (7) ◽  
pp. 279-294 ◽  
Author(s):  
G. V. Jansen ◽  
J. W. Bain

Spruce sawdust was chlorinated under various conditions in an attempt to procure a homogeneous lignin chloride. Success finally attended the use of methyl alcohol as a medium for chlorination. The lignin chloride, which was dissolved by the alcohol during the chlorination and subsequently precipitated by the addition of water, was cream white in color, and analysis showed it to be an alcohol lignin.A homogeneous fraction (No. 2) was obtained from the re-chlorinated product, and it proved to be a chlorinated analogue of Hibbert's monomethylated methyl alcohol lignin, the formulas of the two products being C42H22O6Cl13(OH)2(OCH3)7, and C42H32O6(OH)3(OCH3)7. The molecular weight and the presence of the two hydroxyl groups were confirmed by acetylation, when 2.0 acetyl groups entered the molecule. Eleven of the chlorine atoms in Fraction 2 have evidently replaced ten hydrogen atoms and one hydroxyl group by simple substitution in methyl alcohol lignin, leaving two chlorine atoms which have apparently entered to saturate a double bond. Seven of these chlorine atoms have been shown to be readily removable either by an alkali or by acid reduction. The other six, because of their stable union with the molecule, are surmised to be joined to an aromatic nucleus or at least to some type of ring structure. The product has been shown to react stoichiometrically within limits as narrow as could be expected for such a large molecule.


Molecules ◽  
2020 ◽  
Vol 25 (20) ◽  
pp. 4769
Author(s):  
Tumpa Dasgupta ◽  
Shomita Ferdous ◽  
Yuk-Ching Tse-Dinh

Topoisomerases in the type IA subfamily can catalyze change in topology for both DNA and RNA substrates. A type IA topoisomerase may have been present in a last universal common ancestor (LUCA) with an RNA genome. Type IA topoisomerases have since evolved to catalyze the resolution of topological barriers encountered by genomes that require the passing of nucleic acid strand(s) through a break on a single DNA or RNA strand. Here, based on available structural and biochemical data, we discuss how a type IA topoisomerase may recognize and bind single-stranded DNA or RNA to initiate its required catalytic function. Active site residues assist in the nucleophilic attack of a phosphodiester bond between two nucleotides to form a covalent intermediate with a 5′-phosphotyrosine linkage to the cleaved nucleic acid. A divalent ion interaction helps to position the 3′-hydroxyl group at the precise location required for the cleaved phosphodiester bond to be rejoined following the passage of another nucleic acid strand through the break. In addition to type IA topoisomerase structures observed by X-ray crystallography, we now have evidence from biophysical studies for the dynamic conformations that are required for type IA topoisomerases to catalyze the change in the topology of the nucleic acid substrates.


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