Life in Dry Soils: Effects of Drought on Soil Microbial Communities and Processes

2018 ◽  
Vol 49 (1) ◽  
pp. 409-432 ◽  
Author(s):  
Joshua P. Schimel
Keyword(s):  
Organic Matter ◽  
Hydrological Cycle ◽  
Soil Microbial Communities ◽  
Terrestrial Ecosystems ◽  
Soil Microbial Activity ◽  
Soil Processes ◽  
Microbial Life ◽  
Soil Microbial ◽  
Effects Of Drought ◽  
Main Effects

Throughout Earth's history, drought has been a common crisis in terrestrial ecosystems; in human societies, it can cause famine, one of the Four Horsemen of the apocalypse. As the global hydrological cycle intensifies with global warming, deeper droughts and rewetting will alter, and possibly transform, ecosystems. Soil communities, however, seem more tolerant than plants or animals are to water stress—the main effects, in fact, on soil processes appear to be limited diffusion and the limited supply of resources to soil organisms. Thus, the rains that end a drought not only release soil microbes from stress but also create a resource pulse that fuels soil microbial activity. It remains unclear whether the effects of drought on soil processes result from drying or rewetting. It is also unclear whether the flush of activity on rewetting is driven by microbial growth or by the physical/chemical processes that mobilize organic matter. In this review, I discuss how soil water, and the lack of it, regulates microbial life and biogeochemical processes. I first focus on organismal-level responses and then consider how these influence whole-soil organic matter dynamics. A final focus is on how to incorporate these effects into Earth System models that can effectively capture dry–wet cycling.

scholarly journals Plant genotype controls wetland soil microbial functioning in response to sea-level rise 

2021 ◽  
Author(s):  
Hao Tang ◽  
Susanne Liebner ◽  
Svenja Reents ◽  
Stefanie Nolte ◽  
Kai Jensen ◽  
...  
Keyword(s):  
Climate Change ◽  
Organic Matter ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Soil Microbial Communities ◽  
Soil Microbial Activity ◽  
Litter Breakdown ◽  
Plant Genotype ◽  
Soil Microbial

Abstract. Climate change induced shifts in plant community composition affect the decomposition of soil organic matter via plant-microbe interactions, often with important consequences for ecosystem carbon and nutrient cycling. Given the high degree of intraspecific trait variability in plants, it has been hypothesized that genetic shifts within species yield a similar potential to affect soil microbial functioning.We examined if sea-level rise and plant genotype interact to affect soil microbial communities in an experimental coastal wetland system, using two known genotypes of the dominant salt-marsh grass Elymus athericus characterized by differences in their sensitivity to flooding stress – i.e. an adapted genotype from low-marsh environments and an unadapted genotype from high-marsh environments. Plants were exposed to a large range of flooding frequencies in a factorial mesocosm experiment, and soil microbial-activity parameters (exo-enzyme activity and litter breakdown) and microbial community structure were assessed.Plant genotype mediated the effect of flooding on soil microbial community structure and determined the presence of flooding effects on exo-enzyme activities and belowground litter breakdown. Larger variability in microbial community structure, enzyme activities, and litter breakdown in soils planted with the unadapted plant genotype supported our general hypothesis that effects of climate change on soil microbial activity and community structure can depend on plant intraspecific adaptations. We conclude that adaptive genetic variation in plants can suppress or facilitate the effects of climate change on soil microbial communities. If this finding applies more generally to wetland ecosystems and beyond, it yields important implications for experimental climate change research and models of soil organic matter accumulation.

scholarly journals Evaluation of Microbe-Driven Soil Organic Matter Quantity and Quality by Thermodynamic Theory

mBio ◽  
2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Jianwei Zhang ◽  
Youzhi Feng ◽  
Meng Wu ◽  
Ruirui Chen ◽  
Zhongpei Li ◽  
...  
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Microbial Communities ◽  
Soil Microbial Communities ◽  
Terrestrial Ecosystems ◽  
Thermodynamic Theory ◽  
Ion Cyclotron Resonance ◽  
Soil Microbial ◽  
Region Scale ◽  
Thermodynamic Quality

ABSTRACT Microbial communities, coupled with substrate quality and availability, regulate the stock (formation versus mineralization) of soil organic matter (SOM) in terrestrial ecosystems. However, our understanding of how soil microbes interact with contrasting substrates influencing SOM quantity and quality is still very superficial. Here, we used thermodynamic theory principles and Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) to evaluate the linkages between dissolved organic matter (DOM [organic substrates in soil that are readily available]), thermodynamic quality, and microbial communities. We investigated soils from subtropical paddy ecosystems across a 1,000-km gradient and comprising contrasting levels of SOM content and nutrient availability. Our region-scale study suggested that soils with a larger abundance of readily accessible resources (i.e., lower Gibbs free energy) supported higher levels of microbial diversity and higher SOM content. We further advocated a novel phylotype-level microbial classification based on their associations with OM quantities and qualities and identified two contrasting clusters of bacterial taxa: phylotypes that are highly positively correlated with thermodynamically favorable DOM and larger SOM content versus those which are associated with less-favorable DOM and lower SOM content. Both groups are expected to play critical roles in regulating SOM contents in the soil. By identifying the associations between microbial phylotypes of different life strategies and OM qualities and quantities, our study indicates that thermodynamic theory can act as a proxy for the relationship between OM and soil microbial communities and should be considered in models of soil organic matter preservation. IMPORTANCE Microbial communities are known to be important drivers of organic matter (OM) accumulation in terrestrial ecosystems. However, despite the importance of these soil microbes and processes, the mechanisms behind these microbial-SOM associations remain poorly understood. Here, we used the principles of thermodynamic theory and novel Fourier transform ion cyclotron resonance mass spectrometry techniques to investigate the links between microbial communities and dissolved OM (DOM) thermodynamic quality in soils across a 1,000-km gradient and comprising contrasting nutrient and C contents. Our region-scale study provided evidence that soils with a larger amount of readily accessible resources (i.e., lower Gibbs free energy) supported higher levels of microbial diversity and larger SOM content. Moreover, we created a novel phylotype-level microbial classification based on the associations between microbial taxa and DOM quantities and qualities. We found two contrasting clusters of bacterial taxa based on their level of association with thermodynamically favorable DOM and SOM content. Our study advances our knowledge on the important links between microbial communities and SOM. Moreover, by identifying the associations between microbial phylotypes of different life strategies and OM qualities and quantities, our study indicates that thermodynamic theory can act as a proxy for the relationship between OM and soil microbial communities. Together, our findings support that the association between microbial species taxa and substrate thermodynamic quality constituted an important complement explanation for soil organic matter preservation.

scholarly journals Effect of Plant Growth Regulators on Protease Activity in Forest Floor of Norway Spruce Stand

Forests ◽  
2021 ◽  
Vol 12 (6) ◽  
pp. 665
Author(s):  
Ladislav Holik ◽  
Jiří Volánek ◽  
Valerie Vranová
Keyword(s):  
Organic Matter ◽  
Proteolytic Activity ◽  
Protease Activity ◽  
Forest Floor ◽  
Soil Microbial Activity ◽  
Inhibitory Effects ◽  
Chlorocholine Chloride ◽  
Soil Microbial ◽  
Native Soil ◽  
Transformation Processes

Soil proteases are involved in organic matter transformation processes and, thus, influence ecosystem nutrient turnovers. Phytohormones, similarly to proteases, are synthesized and secreted into soil by fungi and microorganisms, and regulate plant rhizosphere activity. The aim of this study was to determine the effect of auxins, cytokinins, ethephon, and chlorocholine chloride on spruce forest floor protease activity. It was concluded that the presence of auxins stimulated native proteolytic activity, specifically synthetic auxin 2-naphthoxyacetic acid (16% increase at added quantity of 5 μg) and naturally occurring indole-3-acetic acid (18%, 5 μg). On the contrary, cytokinins, ethephon and chlorocholine chloride inhibited native soil protease activity, where ethephon (36% decrease at 50 μg) and chlorocholine chloride (34%, 100 μg) showed the highest inhibitory effects. It was concluded that negative phytohormonal effects on native proteolytic activity may slow down organic matter decomposition rates and hence complicate plant nutrition. The study enhances the understanding of rhizosphere exudate effects on soil microbial activity and soil nitrogen cycle.

scholarly journals Effects of Monoculture, Crop Rotation, and Soil Moisture Content on Selected Soil Physicochemical and Microbial Parameters in Wheat Fields

2012 ◽  
Vol 2012 ◽  
pp. 1-13 ◽  
Author(s):  
A. Marais ◽  
M. Hardy ◽  
M. Booyse ◽  
A. Botha
Keyword(s):  
Soil Moisture ◽  
Microbial Communities ◽  
Crop Rotation ◽  
Management Practices ◽  
Agricultural Soils ◽  
Soil Microbial Communities ◽  
Soil Microbial Activity ◽  
Most Probable Number ◽  
Probable Number ◽  
Soil Microbial

Different plants are known to have different soil microbial communities associated with them. Agricultural management practices such as fertiliser and pesticide addition, crop rotation, and grazing animals can lead to different microbial communities in the associated agricultural soils. Soil dilution plates, most-probable-number (MPN), community level physiological profiling (CLPP), and buried slide technique as well as some measured soil physicochemical parameters were used to determine changes during the growing season in the ecosystem profile in wheat fields subjected to wheat monoculture or wheat in annual rotation with medic/clover pasture. Statistical analyses showed that soil moisture had an over-riding effect on seasonal fluctuations in soil physicochemical and microbial populations. While within season soil microbial activity could be differentiated between wheat fields under rotational and monoculture management, these differences were not significant.

scholarly journals Ozone affects plant, insect, and soil microbial communities: A threat to terrestrial ecosystems and biodiversity

2020 ◽  
Vol 6 (33) ◽  
pp. eabc1176 ◽  
Author(s):  
Evgenios Agathokleous ◽  
Zhaozhong Feng ◽  
Elina Oksanen ◽  
Pierre Sicard ◽  
Qi Wang ◽  
...  
Keyword(s):  
Plant Competition ◽  
Root Exudation ◽  
Soil Microbial Communities ◽  
Alpha Diversity ◽  
Terrestrial Ecosystems ◽  
Insect Communities ◽  
Soil Microbial ◽  
Plant Soil ◽  
Equatorial Africa ◽  
Insect Interactions

Elevated tropospheric ozone concentrations induce adverse effects in plants. We reviewed how ozone affects (i) the composition and diversity of plant communities by affecting key physiological traits; (ii) foliar chemistry and the emission of volatiles, thereby affecting plant-plant competition, plant-insect interactions, and the composition of insect communities; and (iii) plant-soil-microbe interactions and the composition of soil communities by disrupting plant litterfall and altering root exudation, soil enzymatic activities, decomposition, and nutrient cycling. The community composition of soil microbes is consequently changed, and alpha diversity is often reduced. The effects depend on the environment and vary across space and time. We suggest that Atlantic islands in the Northern Hemisphere, the Mediterranean Basin, equatorial Africa, Ethiopia, the Indian coastline, the Himalayan region, southern Asia, and Japan have high endemic richness at high ozone risk by 2100.

scholarly journals Soil Microbial Community Structure and Physicochemical Properties in Amomum tsaoko-based Agroforestry Systems in the Gaoligong Mountains, Southwest China

2019 ◽  
Vol 11 (2) ◽  
pp. 546 ◽  
Author(s):  
Guizhou Liu ◽  
Man Jin ◽  
Chuantao Cai ◽  
Chaonan Ma ◽  
Zhongsuzhi Chen ◽  
...  
Keyword(s):  
Organic Matter ◽  
Microbial Biomass ◽  
Physicochemical Properties ◽  
Phospholipid Fatty Acid ◽  
Soil Microbial Communities ◽  
Total Carbon ◽  
Native Forest ◽  
Soil Microbial Community Structure ◽  
Soil Microbial ◽  
The Impact

Amomum tsaoko is cultivated in forests of tropical and subtropical regions of China, and the planting area is expanding gradually. However, little attention has been paid to the impact of A. tsaoko cultivation on the soil characteristics of the regions. We analyzed the effects of the A. tsaoko-forest agroforestry system (AFs) on the composition of soil microbial communities with increasing stand ages. We also compared the soil physicochemical properties, microbial biomass, and phospholipid fatty acid (PLFA) composition between native forest (NF) and AFs. The results showed that the level of total carbon, nitrogen, and organic matter dramatically dropped in AFs with increasing stand ages. pH affected other soil properties and showed close correlation to total carbon (P = 0.0057), total nitrogen (P = 0.0146), organic matter (P = 0.0075), hydrolyzable nitrogen (P = 0.0085), available phosphorus (P < 0.0001), and available potassium (P = 0.0031). PLFAs of bacteria (F = 4.650, P = 0.037), gram-positive bacteria (F = 6.640, P = 0.015), anaerobe (F = 5.672, P = 0.022), and total PLFA (F = 4.349, P = 0.043) were significantly affected by different treatments, with the greatest value for NF treatment, and least value for AF5. However, the microbial biomass declined during the initial 5 years of cultivation, but it reached the previous level after more than 10 years of cultivation. Our research suggests that AFs is a profitable land-use practice in the Gaoligong Mountains and that AFs showed a recovering trend of the soil nutrient condition with increasing stand ages. However, the severe loss of nitrogen in the soil of AFs requires additional nitrogen during cultivation to restore it to pre-cultivation levels.

scholarly journals Soil Microbial Activity and Diversity in Response to Soil Chemical Factors in Agricultural Soils

2019 ◽  
Vol 24 (1) ◽  
pp. 43
Author(s):  
Lily Ishak ◽  
Philip Hugh Brown
Keyword(s):  
Microbial Communities ◽  
Agricultural Soils ◽  
Soil Health ◽  
Soil Microbial Communities ◽  
Soil Microbial Activity ◽  
Soil Microbial Diversity ◽  
Soil Microbial ◽  
Microbial Responses ◽  
Chemical Factors ◽  
Microbial Groups

The role of microbial communities in maintaining soil health is mostly influenced by chemical condition of soil. Microbial communities vary in response to soil chemical factors. The contradictive results from previous findings emphasise that it is difficult to define a pattern of the influence of soil chemical factors on soil microbial diversity and activity. The aim of the study was to assess soil microbial responses to soil chemical factors in agricultural soils. Composite soil (Dermosol order) samples taken from 16 commercial crop sites in Bundaberg, Queensland, Australia, were chemically and biologically analysed. It was found that bacterial and fungal activity and diversity were significantly affected by soil EC, SOM and NO3-N content, but were not influenced by soil pH, CEC, and Ca:Mg ratio. The diversity of bacterial and fungal communities displayed a positive linear relationship with soil EC, whereas the activity and diversity of these two microbial groups and SOM displayed a significant quadratic relationship. The finding suggested that microbial community was predominantly influenced by SOM content.

scholarly journals Rapid increases in soil pH solubilise organic matter, dramatically increase denitrification potential and strongly stimulate microorganisms from theFirmicutesphylum

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e6090 ◽  
Author(s):  
Craig R. Anderson ◽  
Michelle E. Peterson ◽  
Rebekah A. Frampton ◽  
Simon R. Bulman ◽  
Sandi Keenan ◽  
...  
Keyword(s):  
Organic Matter ◽  
Microbial Communities ◽  
Soil Ph ◽  
Soil Microbial Communities ◽  
Fertilizer Application ◽  
Detailed Knowledge ◽  
Ph Change ◽  
Ph Changes ◽  
Soil Microbial ◽  
Chemical Attributes

Rapid and transient changes in pH frequently occur in soil, impacting dissolved organic matter (DOM) and other chemical attributes such as redox and oxygen conditions. Although we have detailed knowledge on microbial adaptation to long-term pH changes, little is known about the response of soil microbial communities to rapid pH change, nor how excess DOM might affect key aspects of microbial N processing. We used potassium hydroxide (KOH) to induce a range of soil pH changes likely to be observed after livestock urine or urea fertilizer application to soil. We also focus on nitrate reductive processes by incubating microcosms under anaerobic conditions for up to 48 h. Soil pH was elevated from 4.7 to 6.7, 8.3 or 8.8, and up to 240-fold higher DOM was mobilized by KOH compared to the controls. This increased microbial metabolism but there was no correlation between DOM concentrations and CO2respiration nor N-metabolism rates. Microbial communities became dominated byFirmicutesbacteria within 16 h, while few changes were observed in the fungal communities. Changes in N-biogeochemistry were rapid and denitrification enzyme activity (DEA) increased up to 25-fold with the highest rates occurring in microcosms at pH 8.3 that had been incubated for 24-hour prior to measuring DEA. Nitrous oxide reductase was inactive in the pH 4.7 controls but at pH 8.3 the reduction rates exceeded 3,000 ng N2–N g−1h−1in the presence of native DOM. Evidence for dissimilatory nitrate reduction to ammonium and/or organic matter mineralisation was observed with ammonium increasing to concentrations up to 10 times the original native soil concentrations while significant concentrations of nitrate were utilised. Pure isolates from the microcosms were dominated byBacillusspp. and exhibited varying nitrate reductive potential.

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