scholarly journals Phylogenetic Relationships among Populations of the Vineyard Snail Cernuella virgata (Da Costa, 1778)

ISRN Zoology ◽  
2013 ◽  
Vol 2013 ◽  
pp. 1-9 ◽  
Author(s):  
Jasna Puizina ◽  
Sanja Puljas ◽  
Željana Fredotović ◽  
Ivica Šamanić ◽  
Grgur Pleslić
Keyword(s):  
Genetic Variability ◽  
16S Rdna ◽  
Phylogenetic Relationships ◽  
Western Europe ◽  
Population Analysis ◽  
Shell Growth ◽  
Shell Height ◽  
Haplotype Network ◽  
Coi Gene ◽  
Island Population

Cernuella virgata (Da Costa, 1778) (Mollusca: Hygromiidae), commonly known as the “vineyard snail,” is endemic species in Mediterranean and Western Europe including the British Isles, but in the Eastern USA and Australia it represents an introduced invasive species. The present work examines the genetic variability and phylogenetic relationships among the four populations of this land snail sampled along the east Adriatic region of Croatia using mitochondrial markers (partial 16S rDNA and COI gene) in addition to traditional methods of shell’s shape analysis. All the three molecular-phylogenetic approaches (median joining haplotype network analysis and Bayesian analysis, as well as maximum likelihood analysis) revealed two-three major subnetworks for both 16S rDNA and COI, with a clear distinction between south Adriatic haplotypes (Pisak) and north Adriatic haplotypes (Krk and Cres). The population from Karlobag was comprised of both north and south haplotypes, thus representing a putative contact zone between these two groups. The morphometric analysis showed that individuals from Cres island population were statistically significantly wider and higher than individuals from Pisak population. Analysis of the SW/SH ratio and the relationship between shell width and shell height showed no differences in shell growth between the two examined populations, indicating equal shell growth and shape, which gives the possibility that differences in size of individuals between those two populations could be influenced by biotic (physiological) or abiotic (environmental) factors. This study represents the first analysis of genetic variability and relatedness among native populations of C. virgata.

scholarly journals Genetic variability of populations of the white-eared opossum, Didelphis albiventris Lund 1840 (Didelphimorphia; Didelphidae) in Brazil

2019 ◽  
Vol 79 (4) ◽  
pp. 594-602
Author(s):  
D. C. Nascimento ◽  
B. A. T. P. Campos ◽  
E. C. Fraga ◽  
M. C. Barros
Keyword(s):  
Gene Flow ◽  
Genetic Variability ◽  
Atlantic Forest ◽  
Population Analysis ◽  
Population Level ◽  
Haplotype Network ◽  
Mantel Test ◽  
Ancestral Polymorphism ◽  
Central Brazil ◽  
Didelphis Albiventris

Abstract Didelphis albiventris are found throughout Northeast and Central Brazil to central-southern Uruguay and it was subject of few studies in a population level. Given this, the present study investigated the genetic variability of the species using the mitochondrial molecular marker cytochrome oxidase c subunit I. We analyzed samples from the different biomes within three Brazilian regions: Northeast (Caatinga , Cerrado, and Atlantic Forest), Southeast (Cerrado , Atlantic Forest, Cerrado/Atlantic Forest, and Cerrado/Caatinga ecotones) and South (Pampa and Atlantic Forest). Software BAPs retrieved five distinct demes: dm 1, dm 2, and dm 5 that occurs in South, Northeast and Southeast regions respectively and the dm 3 and dm 4 are wide distributed in Northeast and Southeast. Population analysis performed with AMOVA, haplotype network and Mantel test estimated the veracity of the demes. The FST shows structuring for the five demes, with dm 1 (South region) isolated from the others, however the other analysis showed the Northeast/Southeast demes (dm 2-5) united, diagnosing gene flow between them, mainly at the transitional zones, in areas as far away as areas with similar latitude interval (Southeast vs South) that was not detected gene flow. In the haplotype network, the mutational steps was conclusive in split dm1 from dm 2-5 with 15 mutational steps and the Mantel test was moderated, which is explained by genetic similarity despite the great geographic distances (Northeast/Southeast). Thus, our analysis recognized two different lineages (South and Northeast/Southeast) and indicate that the biomes were not decisive in their isolation. The sharing of demes at the transitional zones and in areas with high latitudinal intervals reflects a recent ancestral polymorphism for D. albiventris. The plasticity in the occupation of the space by this species contributes in its wide dispersion capability, that is, geographical distribution. Our results revealed important implications for the management of D. albiventris in these transitional zones areas where demes were shared.

scholarly journals Molecular analysis of the mitochondrial markers COI, 12S rDNA and 16S rDNA for six species of Iranian scorpions

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Parisa Soltan-Alinejad ◽  
Javad Rafinejad ◽  
Farrokh Dabiri ◽  
Piero Onorati ◽  
Olle Terenius ◽  
...  
Keyword(s):  
16S Rdna ◽  
Phylogenetic Analyses ◽  
Coi Gene ◽  
Diagnostic Tools ◽  
Morphological Identification ◽  
Species Determination ◽  
Important Species ◽  
Mitochondrial Markers ◽  
12S Rdna ◽  
Rdna Sequences

Abstract Objectives Annually, 1.2 million humans are stung by scorpions and severely affected by their venom. Some of the scorpion species of medical importance have a similar morphology to species with low toxicity. To establish diagnostic tools for surveying scorpions, the current study was conducted to generate three mitochondrial markers, Cytochrome Oxidase I (COI gene), 12S rDNA and 16S rDNA for six species of medically important Iranian scorpions: Androctonus crassicauda, Hottentotta saulcyi, Mesobuthus caucasicus, M. eupeus, Odontobuthus doriae, and Scorpio maurus. Results Phylogenetic analyses of the obtained sequences corroborated the morphological identification. For the first time, 12S rDNA sequences are reported from Androctonus crassicauda, Hottentotta saulcyi, Mesobuthus caucasicus and M. eupeus and also the 16S rDNA sequence from Hottentotta saulcyi. We conclude that the mitochondrial markers are useful for species determination among these medically important species of scorpions.

Ecophenotypic plasticity in shell growth direction of asari clam Ruditapes philippinarum

2021 ◽  
pp. 1-6
Author(s):  
Takeshi Tomiyama
Keyword(s):  
Growth Rate ◽  
Shell Growth ◽  
Shell Height ◽  
Growth Direction ◽  
Ruditapes Philippinarum ◽  
Shell Morphology ◽  
Individual Growth ◽  
Shell Size ◽  
Internal Factors ◽  
Suitable Habitats

Abstract Asari clam (or Manila clam) Ruditapes philippinarum is an important bivalve for local fisheries. This species exhibits a large variation in shell morphology, and the shell roundness tends to be greater in more unsuitable habitats. To test whether the increments in shell size parameters (length, height and width) were affected solely by environmental conditions or by internal factors such as initial shell shapes or growth rate, a field caging experiment was conducted at two different sites of unsuitable and suitable habitats in Matsukawaura Lagoon, Japan, where shell shapes of wild clams were significantly different between the habitats. In the experiment, clams were released from the two sites to the same site or to the other site and were re-collected after 3, 6 and 12 months of caging. Caged clams originating from unsuitable habitats and released to suitable habitats showed a reduction in shell height relative to shell length, while clams from suitable habitats introduced to unsuitable habitats showed marked increases in both shell height and width. Generalized linear mixed models suggested that the increase in shell height was affected largely by the release habitat (environment) whereas the increase in shell width was affected largely by the individual growth rate. These results suggest that marginal growths in shell height and width respond differently to external and internal factors of clams, resulting in plasticity in their shell shapes according to the environments to which they are translocated.

Genetic variability and demographic history of Heliothis virescens (Lepidoptera: Noctuidae) populations from Brazil inferred by mtDNA sequences

2011 ◽  
Vol 102 (3) ◽  
pp. 333-343 ◽  
Author(s):  
K.C. Albernaz ◽  
K.L. Silva-Brandão ◽  
P. Fresia ◽  
F.L. Cônsoli ◽  
C. Omoto
Keyword(s):  
Genetic Structure ◽  
Genetic Variability ◽  
Heliothis Virescens ◽  
Demographic History ◽  
Haplotype Diversity ◽  
Low Frequency ◽  
Haplotype Network ◽  
Demographic Expansion ◽  
Significant Genetic Structure ◽  
History Of

AbstractIntra- and inter-population genetic variability and the demographic history of Heliothis virescens (F.) populations were evaluated by using mtDNA markers (coxI, coxII and nad6) with samples from the major cotton- and soybean-producing regions in Brazil in the growing seasons 2007/08, 2008/09 and 2009/10. AMOVA indicated low and non-significant genetic structure, regardless of geographical scale, growing season or crop, with most of genetic variation occurring within populations. Clustering analyzes also indicated low genetic differentiation. The haplotype network obtained with combined datasets resulted in 35 haplotypes, with 28 exclusive occurrences, four of them sampled only from soybean fields. The minimum spanning network showed star-shaped structures typical of populations that underwent a recent demographic expansion. The recent expansion was supported by other demographic analyzes, such as the Bayesian skyline plot, the unimodal distribution of paired differences among mitochondrial sequences, and negative and significant values of neutrality tests for the Tajima's D and Fu's FS parameters. In addition, high values of haplotype diversity (Ĥ) and low values of nucleotide diversity (π), combined with a high number of low frequency haplotypes and values of θπ<θW, suggested a recent demographic expansion of H. virescens populations in Brazil. This demographic event could be responsible for the low genetic structure currently found; however, haplotypes present uniquely at the same geographic regions and from one specific host plant suggest an initial differentiation among H. virescens populations within Brazil.

scholarly journals The Influence of Temperature - Food Availability on the Shell Growth of Sea Scallop Placopecten magellanicus (Gmelin, 1791)

2016 ◽  
Vol 19 (1) ◽  
pp. 1 ◽  
Author(s):  
Adi Santoso
Keyword(s):  
Food Availability ◽  
Shell Growth ◽  
Shell Height ◽  
Culture Conditions ◽  
Outer Edge ◽  
Placopecten Magellanicus ◽  
Surface Sites ◽  
Sea Scallop ◽  
Key Words Temperature ◽  
Culture Site

A study of the growth of the sea scallop, Placopecten magellanicus, under suspended culture conditions was carried out over a seven month period at a culture site in Graves Shoal, Mahone Bay,Nova Scotia – Canada. Scallop spat were cultivated in pearl nets at a density of 30-35 per net set at four locations corresponding to the surface (7 m) and bottom (14 m) at the outer edge and the center of the site. Shell height was measured at monthly intervals. Environmental conditions represented as temperature and food availability at the surface and bottom over the same period were also monitored. Shell Height growth rate was slightly greater at the surface than at the bottom. At the surface sites growth was greater at the outside (SUROUT) than at the center locations, but at the bottom growth was greater at the centre location (BOTIN). The only significant relationship between shell growth and temperature - food variables was chlorophyll a concentration.  Key words: temperature, food availability, shell height, sea scallop

scholarly journals DNA BARCODING USING COI GENE SEQUENCES OF WILD BETTA FIGHTING FISH FROM INDONESIA: PHYLOGENY, STATUS AND DIVERSITY

2020 ◽  
Vol 26 (2) ◽  
pp. 97
Author(s):  
Melta R. Fahmi ◽  
Eni Kusrini ◽  
Erma P. Hayuningtiyas ◽  
Shofihar Sinansari ◽  
Rudhy Gustiano
Keyword(s):  
Genetic Diversity ◽  
Genetic Distance ◽  
Dna Sequences ◽  
Phylogenetic Relationships ◽  
Gene Sequence ◽  
Ornamental Fish ◽  
Coi Gene ◽  
Tree Construction ◽  
In The Wild ◽  
Blast Program

The wild betta fish is a potential ornamental fish export commodity normally caught by traders or hobbyists in the wild. However, the population of wild betta in nature has declined and become a threat for their sustainability. This research was conducted to analyze the genetic diversity, phylogenetic relationships, and molecular identification through DNA COI gene sequence of Indonesian wild betta fish. A total of 92 wild betta fish specimens were collected in this study. Amplification of COI genes was carried out using Fish F1, Fish R1, Fish F2, and Fish R2 primers. The genetic diversity and phylogenetic relationships were analyzed using MEGA version 5 software program. Species identification of the specimen was conducted using BLAST program with 98-100% similarity value of the DNA sequences to indicate the same species. Phylogenetic tree construction showed seven monophyletic clades and showed that Betta smaragdina was the ancestral species of genus Betta in Indonesian waters. Genetic distance among species ranged from 0.02 to 0.30, whereas intra-species genetic distance ranged from 0 to 6.54.

A very deep Provanna (Gastropoda: Abyssochrysoidea) discovered from the Shinkai Seep Field, Southern Mariana Forearc

2016 ◽  
Vol 98 (3) ◽  
pp. 439-447 ◽  
Author(s):  
Chong Chen ◽  
Hiromi Kayama Watanabe ◽  
Yasuhiko Ohara
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Shell Height ◽  
Coi Gene ◽  
Undescribed Species ◽  
Bathymetric Range ◽  
Large Size ◽  
C Subunit ◽  
Mariana Forearc ◽  
Chemosynthetic Ecosystems

The ‘Shinkai Seep Field’ is a serpentinite-hosted chemosynthetic ecosystem in the Southern Mariana Forearc. In June 2015 the site was revisited and a number of rissoiform gastropods were collected. Taxonomic investigations revealed that these specimens represent a hitherto undescribed species of Provanna (Gastropoda: Abyssochrysoidea), described herein as Provanna cingulata n. sp. This new species is characterized by numerous spiral keels, lack of significant axial sculpture, rounded and inflated whorls, and large size for the genus. With the shell height exceeding 16.5 mm (may reach 20 mm), it is the largest Provanna species known thus far. Phylogenetic analysis using 411 bp of the cytochrome oxidase c subunit I (COI) gene confirmed its systematic placement within the genus Provanna. This is the only gastropod from a family endemic to chemosynthetic ecosystems thus far known from the ‘Shinkai Seep Field’. Furthermore, with a collection depth of 5687 m, it represents the deepest known bathymetric range for the superfamily Abyssochrysoidea as a whole.

The phylogenetic relationships of Paramesotriton (Caudata: Salamandridae) based on partial mitochondrial DNA gene sequences

Zootaxa ◽  
2012 ◽  
Vol 3150 (1) ◽  
pp. 59
Author(s):  
XIAOMING GU ◽  
HUI WANG ◽  
RONGRONG CHEN ◽  
YINGZHOU TIAN ◽  
SONG LI
Keyword(s):  
Mitochondrial Dna ◽  
Bayesian Inference ◽  
Maximum Likelihood ◽  
16S Rdna ◽  
Phylogenetic Relationships ◽  
Maximum Parsimony ◽  
Mitochondrial Gene ◽  
Sister Group ◽  
Species Group ◽  
Close Phylogenetic Relationship

We examined phylogenetic relationships among newst of the genus Paramesotriton using partial mitochondrial gene se-quences, including the ND2-tRNATyr region (1415 bp) and the 12S rDNA-tRNAVal -16S rDNA region (1774 bp), from 42individuals of 10 recognized Paramesotriton species and outgroups by Bayesian inference (BI), Maximum likelihood(ML) and Maximum Parsimony (MP) methods. We found that, (1) Laotriton laoensis is the sister group of Paramesotri-ton, (2) the genus Paramesotriton is monophyletic, composed of either the P. caudopunctatus species group and the P.chinensis species group, or the subgenera Allomesotriton and Paramesotriton (3) P. longliensis and P. zhijinensis shouldbe placed in the P. caudopunctatus species group or subgenus Allomesotriton; (4) P. fuzhongensis is not a junior synonym of P. chinensis, and there is a close phylogenetic relationship between P. fuzhongensis and P. guangxiensis.

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