scholarly journals Identification of Endogenous Controls for Analyzing Serum Exosomal miRNA in Patients with Hepatitis B or Hepatocellular Carcinoma

2015 ◽  
Vol 2015 ◽  
pp. 1-12 ◽  
Author(s):  
Yi Li ◽  
Liqun Zhang ◽  
Fei Liu ◽  
Guiming Xiang ◽  
Dongneng Jiang ◽  
...  

Serum exosomal microRNAs (miRNAs) have received considerable attention as potential biomarkers for diagnosing cancer. The canonical technique for measuring miRNA transcript levels is reverse transcription quantitative polymerase chain reaction (RT-qPCR). One prerequisite for validating RT-qPCR data is proper normalization with respect to stably expressed endogenous reference genes. However, genes that meet all of the criteria of a control gene for exosomal miRNAs have not yet been identified. To find out the control gene for exosomal miRNAs, we evaluated the expression stability of 11 well-known reference genes in circulating exosomes. In this study, we found that the combination ofmiR-221,miR-191,let-7a,miR-181a, andmiR-26acan be an optimal gene reference set for normalizing the expression of liver-specific miRNAs. This combination enhanced the robustness of the relative quantification analyses. These findings highlight the importance of validating reference genes before quantifying target miRNAs. Furthermore, our findings will improve studies that monitor hepatitis progression and will aid in the discovery of noninvasive biomarkers to diagnose early stage HCC.

Blood ◽  
2018 ◽  
Vol 132 (Supplement 1) ◽  
pp. 5406-5406 ◽  
Author(s):  
Cao Di ◽  
Yu Jiang ◽  
Mao Li ◽  
Xu Juan ◽  
Caigang Xu

Abstract Background Diffuse large B-cell lymphoma (DLBCL) is a lymphoproliferative disorder originating in B-lymphocytes, and accounting for about 30% of all non-Hodgkin Lymphoma (NHL) . Since most patients show a lack of apparent symptoms in early stage, they are diagnosed at a late stage and therefore lose the best therapeutic opportunity. An increasing number of studies have indicated indicates that exosomal miRNAs extracted from peripheral blood might be usable as noninvasive biomarkers for the early diagnosis of tumors, therapy response monitoring, and prognosis. Although circulating exosomal miRNA has been studied in many malignant cancers, there are currently no reports examining their use in terms of DLBCL diagnosis. In light of previous research findings, we hypothesized that exosomal miRNA from peripheral blood can work as a candidate for DLBCL diagnosis. Materials and methods Blood samples were collected from 99 newly diagnosed DLBCL patients, 21 natural killer/T-cell lymphoma (NKTCL ) patients and 94 healthy people. NKTCL is another common NHL type which with high incidence in Asia and was chosen as case-control in our study. In the initial of the study, exosomes were extracted and identified by nanoparticle tracking analysis (NTA), Transmission Electron Microscope (TEM) and western blot. Next, Exiqon microarray was performed in 10 DLBCL patients and 5 HCs to determine serum exosomal miRNA profiles, which we called the screening stage. Identified miRNAs were confirmed through testing stage (24 DLBCL patients and 24 HCs) using quantitative reverse transcription polymerase chain reaction (qRT-PCR). According to the criterion that Ct(miRNA)<34,Ct(negative control)>40,fold change >1.5 and two-tailed P<0.05, miRNAs tested in testing stage were further chosen and confirmed through validation stages (65 DLBCL patients and 65 HCs) using qRT-PCR. Next, we carried out ROC (Receiver operating characteristic) curves to assess the performance of identified miRNAs in diagnosis DLBCL. Finally, we test the specificity and sensitivity of the identified miRNA by 21 NKTCL patients. Results Through the three-stage process, five miRNAs, including three high expression (miR-379-5p, miR-135a-3p ,miR-4476) and two low expression (miR-483-3p, miR-451a) were identified between DLBCLs and HCs. the AUCs (area under the curve , AUC)of miR-379-5p, miR-135a-3p, miR-4476, miR-483-3p, and miR-451a in testing stage were 0.757 (95% CI 0.612-0.869), 0.712 (95% CI 0.563-0.833), 0.673 (95%CI 0.522-0.801), 0.674 (95% CI 0.524-0.803), and 0.696 (95% CI 0.544-0.818), respectively, and the AUC of the panel was 0.951 (95% CI0.847-0.993). the AUCs of miR-379-5p, miR-135a-3p, miR-4476, miR-483-3p, and miR-451a in validation stage were 0.731(95% CI 0.646-0.805), 0.616(95% CI 0.527-0.700), 0.660 (95%CI 0.572-0.741), 0.620 (95% CI 0.530-0.703), and 0.648 (95% CI 0.560-0.730), respectively, and the AUC of panel was 0.841 (95% CI 0.767-0.900). When combined the testing and validation stage, revealing AUCs for miR-379-5p, miR-135a-3p, miR-4476, miR-483-3p, and miR-451a were 0.734 (95% CI 0.663-0.798), 0.639 (95% CI 0.564-0.710), 0.661 (95%CI 0.586-0.730), 0.637 (95% CI 0.561-0.707), and 0.663 (95% CI 0.588-0.732),respectively; the AUC of the combined panel was 0.824 (95% CI 0.760-0.877) .The panel also showed good resolving power in distinguishing DLBCL patients from NKTCL patients with the AUC of 0.848(95%CI 0.756-0.902).Moreover,miR-451a showed fairish performance in distinguishing NKTCL and HC, as well as discriminate late stage (IIB-IV) from early stage DLBCL, A tendency for the level of miR-135a-3p to declined gradually with increases in IPI was noted. Conclusions The panel composed by subsets of circulating exosomal miRNAs, including hsa-miR-379-5p, hsa-miR-135a-3p, hsa-miR-4476, hsa-miR-483-3p and hsa-miR-451a,can be used as noninvasive biomarkers for DLBCL diagnosis. Circulating exosomal hsa-miR-379-5p,hsa-miR-135a-3p,hsa-miR-4476 and hsa-miR-451a formed a panel which can be well distinguished DLBCL and NKTCL. Circulating exosomal hsa-miR-451a can be used as noninvasive biomarkers for NKTCL diagnosis. Certain circulating exosoaml miRNAs were related to clinical characteristics, specifically, circulating exosomal hsa-miR-451a was related to stage, while hsa-miR-135a-3p was related to IPI. Disclosures No relevant conflicts of interest to declare.


2019 ◽  
Vol 20 (18) ◽  
pp. 4353 ◽  
Author(s):  
Simone Donati ◽  
Simone Ciuffi ◽  
Maria L. Brandi

miRNAs are small non-coding RNAs of about 18–25 nucleotides that negatively regulate gene expression at the post-transcriptional level. It was reported that a deregulation of their expression patterns correlates to the onset and progression of various diseases. Recently, these molecules have been identified in a great plethora of biological fluids, and have also been proposed as potential diagnostic and prognostic biomarkers. Actually, real time quantitative polymerase chain reaction is the most widely used approach for circulating miRNAs (c-miRNAs) expression profiling. Nevertheless, the debate on the choice of the most suitable endogenous reference genes for c-miRNAs expression levels normalization is still open. In this regard, numerous research groups are focusing their efforts upon identifying specific, highly stable, endogenous c-mRNAs. The aim of this review is to provide an overview on the reference genes currently used in the study of various pathologies, offering to researchers the opportunity to select the appropriate molecules for c-miRNA levels normalization, when their choosing is based upon literature data.


2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Luciana Midori Takamori ◽  
Alyne Valéria Carrion Pereira ◽  
Gustavo Maia Souza ◽  
Luiz Gonzaga Esteves Vieira ◽  
Alessandra Ferreira Ribas

Placenta ◽  
2013 ◽  
Vol 34 (7) ◽  
pp. 544-547 ◽  
Author(s):  
X. Huang ◽  
M. Baumann ◽  
L. Nikitina ◽  
F. Wenger ◽  
D. Surbek ◽  
...  

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