scholarly journals Analysis of Morphological Characteristics and Variation in Five Populations of Zabelia tyaihyonii in South Korea

2021 ◽  
Vol 24 (6) ◽  
pp. 619-628
Author(s):  
Jae Ik Nam ◽  
Mun Seop Kim ◽  
Jeong Ho Song ◽  
Jeong Min Seo ◽  
Go Eun Choi ◽  
...  
Keyword(s):  
Morphological Characteristics ◽  
Principal Component ◽  
Calyx Lobe ◽  
Flower Number ◽  
Intermediate Group ◽  
Corolla Length ◽  
The Difference ◽  
Highly Correlated ◽  
Main Component ◽  
Inflorescence Length

Background and objective: Native to the limestone zones of the Korean Peninsula, Zabelia tyaihyonii is a popular plant for landscaping. As it is now classified as a rare species, the conservation of its genetic resources is necessary.Methods: In this study, which aimed to understand the morphological variation of Z. tyaihyonii, 18 characteristics of Z. tyaihyonii from five habitats were examined.Results: Of these 18 characteristics, 16 characteristics showed significant differences among sites, and the coefficient of variation ranged from 5.4% (for corolla lobe number) to 31.3% (for flower number). Notable variations were observed in the size of flower and calyx lobe. When the corolla length and calyx lobe length were used as the classification key of Z. tyaihyonii, the sites were divided into those with small, intermediate, and large values. Hair was observed on the filament of all samples, a finding which conflicts with an earlier report. Rather than classifying Z. tyaihyonii into different species on the basis of corolla length (COL) and calyx lobe length (CALL) values, we recommend modifying the species description to incorporate the variation in these characteristics of interest. Principal component analysis results showed that the first main component was highly correlated with the traits related to the size of the calyx lobe (length: 0.819, width: 0.758), and the second main component was highly correlated with the traits related with the size of the inflorescence (length: 0.790, width: 0.626).Conclusion: Several notable variations were identified among the characteristics related to inflorescence and calyx lobe. There is little genetic exchange among groups, or each group is influenced by micro environmental factors, because sites that are located nearby. In addition, the difference between COL and CALL, which is used as the classification key for Z. tyaihyonii, was divided into small group, large group, and intermediate group, regardless of the sites’ geographical distance.

scholarly journals COMPARISON OF CEMELE PEPPER WITH BELL PEPPER GENOTYPES (Capsicum annuum L. var. grossum) WITH RESPECT TO AGRONOMIC AND MORPHOLOGICAL CHARACTERISTICS

2021 ◽  
Vol 20 (2) ◽  
pp. 121-134
Author(s):  
Hakan Başak
Keyword(s):  
Capsicum Annuum ◽  
Plant Protection ◽  
Morphological Characteristics ◽  
Principal Component ◽  
Capsicum Annuum L ◽  
Characterization Study ◽  
Bell Peppers ◽  
The Mean ◽  
The Difference ◽  
Main Component

This study was conducted in 2014 and 2015 to compare Cemele pepper with other bell peppers (Capsicum annuum L. var. grossum) genotypes with respect to agronomic and morphological traits. Totally 75 bell peppper genotypes were collected from the centrum and villages of Kırşehir province. For a total of 48 agronomic and morphological characteristics of pepper genotype, the characterization study of IPGRI according to the criteria of the International Union of Plant Protection Preservation (UPOV) were done made. As a result of the principal component analysis, total 11 main component axes were obtained and these axes represented 73.25% of the total variance. Genotypes were divided into 15 groups in dendrogram according to morphological and agronomic characteristics. The mean of the quantitative characteristics of each group was determined and it was determined which group or group was the difference between them. As a result of cluster analysis; D1, D20, D54, D67K, D43 and D39 coded genotypes were determined to be the most distant genotypes in terms of agronomic and morphological degree of relation. To conclude, with the identification of the genotypes of bell peppers in Kırşehir province, it will provide significant advantages in future pepper breeding studies as well as contributing to the formation of pepper database.

scholarly journals Large-scale statistical study of Scanning Multichannel Microwave Radiometer (SMMR) data over Antarctica

1991 ◽  
Vol 37 (125) ◽  
pp. 129-139 ◽  
Author(s):  
Michel Fily ◽  
Jean-Pierre Benoist
Keyword(s):  
Large Scale ◽  
Accumulation Rate ◽  
Microwave Radiometer ◽  
Principal Component ◽  
Snow Accumulation ◽  
Central Plateau ◽  
Brightness Temperatures ◽  
The Difference ◽  
Highly Correlated ◽  
Water Vapour Fluxes

Abstract SMMR data over Antarctica have been statistically analysed for four different periods of 1 year (1981) and compared to geophysical data such as surface temperature, snow-accumulation rate and topography. The spatial variations of the microwave signature are stable with time. Although the ten channels are highly correlated, principal-component analysis reveals the importance of polarization and frequency. The difference between brightness temperatures at the two polarizations is found to be dependent on the atmospheric water-vapour fluxes over the ice sheet, which modify the temperature-accumulation ratio and therefore the snow stratification. The brightness-temperature gradient with frequency is related to the topography of the central plateau area. A more important subsidence over diverging areas could explain the different structure of the accumulated snow.

scholarly journals Large-scale statistical study of Scanning Multichannel Microwave Radiometer (SMMR) data over Antarctica

1991 ◽  
Vol 37 (125) ◽  
pp. 129-139 ◽  
Author(s):  
Michel Fily ◽  
Jean-Pierre Benoist
Keyword(s):  
Large Scale ◽  
Accumulation Rate ◽  
Microwave Radiometer ◽  
Principal Component ◽  
Snow Accumulation ◽  
Central Plateau ◽  
Brightness Temperatures ◽  
The Difference ◽  
Highly Correlated ◽  
Water Vapour Fluxes

AbstractSMMR data over Antarctica have been statistically analysed for four different periods of 1 year (1981) and compared to geophysical data such as surface temperature, snow-accumulation rate and topography. The spatial variations of the microwave signature are stable with time. Although the ten channels are highly correlated, principal-component analysis reveals the importance of polarization and frequency. The difference between brightness temperatures at the two polarizations is found to be dependent on the atmospheric water-vapour fluxes over the ice sheet, which modify the temperature-accumulation ratio and therefore the snow stratification. The brightness-temperature gradient with frequency is related to the topography of the central plateau area. A more important subsidence over diverging areas could explain the different structure of the accumulated snow.

IT Performance Key Factors Extraction Based on PCA Selective Ensemble

2011 ◽  
Vol 121-126 ◽  
pp. 4003-4007
Author(s):  
Ming Yan Hu ◽  
Wei Guo ◽  
Nan Zhao
Keyword(s):  
Principal Component Analysis ◽  
Complex Analysis ◽  
Principal Component ◽  
Key Factors ◽  
Selective Ensemble ◽  
It Performance ◽  
The Difference ◽  
Analysis System ◽  
Main Component ◽  
Pca Algorithm

The IT performance evaluation is a complex analysis system. Some key factors that can reflect the essential characteristics and be easy to acquire, should be extracted to help us to clarify evaluation, analysis and diagnoses. In this paper for the uncertainty of IT performance data, an algorithm of IT performance key factors extraction based on selective ensemble of principal component analysis (PCA) is proposed. Unlike the traditional PCA algorithm, PCA selective ensemble increase the difference degree between the main component and the others. Moreover it expands the selective ensemble in the application of unsupervised algorithm. The validity of the algorithm is verified through the analysis of the actual data.

THYMUS VARIABILITY IN WHITE RATS EXPOSED TO FORMALDEHYDE

2019 ◽  
pp. 105-116
Author(s):  
V.N. Voloshin ◽  
I.S. Voloshina ◽  
I.Yu. Vash
Keyword(s):  
White Male ◽  
Principal Component ◽  
Middle Part ◽  
Procrustes Analysis ◽  
Male Rats ◽  
Canonical Variables ◽  
Generalized Procrustes Analysis ◽  
White Rats ◽  
Main Component ◽  
Formaldehyde Inhalation

The aim of the paper is to study thymus variability in white rats, which were exposed to formaldehyde, and to compare these data with the indicators in control animals. Materials and Methods. The trial enrolled 72 white male rats, initial body weight 40–50 g. The animals were divided into 2 groups (36 rats in each). The first group consisted of control rats. Animals of the second group were exposed to formaldehyde inhalation, 2.766 mg/m3. To characterize the variability of the organ size, centroids were determined. The superposition of landmark configurations was performed using the generalized Procrustes analysis method, MorphoJ 1.06d program. The principal component analysis and canonical analysis of the obtained data were carried out. Results. One-Way ANOVA revealed a high level of intergroup differences in Procrust distance (F=1.34; p<0.0001). The significant effect of the duration of formaldehyde exposure on centroid size was established. The Kruskal-Wallis criterion was 19.778 (p=0.0014). The analysis of the principal components indicated that each of the first 10 components stands for more than 1 % of Procrustes coordinate variance. In this case, the first 7 components compatibly explain 91.398 % of thymus variability. The proportion of the first main component to the total variance of the Procrustes coordinates is 40.236 %. PC1 (-) shows changes in the thymus shape, mostly affecting the tops of its lobes, the middle part of the right boundary and the entire left thymus boundary. The scattering ellipses of the thymus ordinates in rats exposed to formaldehyde, in the first two canonical variables are located higher than those in the control animals. Conclusion. Formaldehyde inhalation leads to thymus changes in white rat. The most significant differences with control data are determined along the second canonical variable. Keywords: thymus, form, rat, formaldehyde, geometric morphometry. Цель. Изучение изменчивости формы тимуса белых крыс, находившихся в условиях влияния формальдегида, и сравнение этих данных с показателями, полученными у контрольных животных. Материалы и методы. Работа выполнена на 72 белых крысах-самцах с начальной массой тела 40–50 г. Животные были разделены на 2 серии (по 36 крыс). Первую серию составляли контрольные крысы. Животные второй серии подвергались ингаляционному воздействию формальдегида (ФА) в концентрации 2,766 мг/м3. Для характеристики изменчивости размеров органов определяли размер их центроидов. Процедуру суперимпозиции конфигураций ландмарок выполняли методом генерализованного прокрустова анализа с использованием программы MorphoJ 1.06d. Проводили анализ главных компонент и канонический анализ полученных данных. Результаты. Однофакторный дисперсионный анализ выявил высокий уровень межгрупповых различий по показателю прокрустовых расстояний (F=1,34; р<0,0001). Установлено значительное влияние продолжительности нахождения животных в условиях воздействия ФА на размер центроида. Критерий Краскела–Уоллиса составил 19,778 (р=0,0014). Анализ главных компонент указывал на то, что каждая из первых 10 компонент объясняет более 1 % дисперсии прокрустовых координат. При этом первые 7 компонент совместно объясняют 91,398 % изменчивости формы тимуса. Вклад первой главной компоненты в общую дисперсию прокрустовых координат составляет 40,236 %. РС1 (–) показывает изменения формы тимуса, в большей степени затрагивающие верхушки его долей, среднюю часть правого контура и весь левый контур тимуса. Эллипсы рассеивания ординат тимусов, принадлежащих крысам, подвергавшимся влиянию ФА, в пространстве первых двух канонических переменных расположены выше по отношению к таковым контрольных животных. Заключение. Ингаляционное воздействие формальдегида приводит к изменению формы тимуса белых крыс. Наибольшие различия с контрольными данными определяются вдоль второй канонической переменной. Ключевые слова: тимус, форма, крыса, формальдегид, геометрическая морфометрия.

Inheritance of Some Morphological Characteristics of Parental Lines in Mustard-Rape Hybrid

2020 ◽  
pp. 23-30
Keyword(s):  
First Generation ◽  
Agronomic Traits ◽  
Morphological Characteristics ◽  
Morphological Characters ◽  
Hybrid Plant ◽  
Distant Hybridization ◽  
Degree Of Dominance ◽  
Whole Plant ◽  
Row Width ◽  
The Difference

Distant hybridization is known to play an important role in expanding the gene pool of any crop. It is believed that the combination of different genomes in one nucleus, as a rule, is accompanied by the phenomenon of “genomic shock”, resulting in a variety of genetic and epigenetic changes. This provides a wealth of material for the selection of genotypes adapted to different environmental conditions. Interspecific hybrids in different combinations were obtained in the genus Brassica, however, until now, interest in distant hybridization in this genus has not died out, since such important crops as rapeseed and mustard demand an improvement of many important agronomic traits. The aim of this work was to study the degree of manifestation of morphological characters of a leaf, flower, and plant as a whole in the hybrid obtained by crossing of brown mustard of the variety Slavyanka and a collection specimen of spring rape. Seeds were sown in the spring of 2019 in a field with 30 cm row width. During the flowering period a number of morphological characters of a flower, leaf, and the whole plant were analyzed. Each parameter was evaluated with 10 plants. The degree of dominance in first-generation hybrid was calculated by the formula of Beil, Atkins (1965). The dominance coefficients were not determined in the case when the difference between the parental samples was insignificant. Differences between parental samples were determined by Student t-test. The level of heterosis was calculated according to the formula of Rasul et al (2002). In a mustard-rapeseed hybrid, the size of the leaves of the lower row was inherited by the type of rapeseed, which had larger leaves than mustard. The height of the hybrid plant was inherited by the type of mustard (hp = 1.32, Ht = 4.89%), and intermediate inheritance was observed for the length of the internodes (hp = -0.48). The size of the flower petals and sepals was inherited by the type of rapeseed, and significant heterosis was observed for the length of the pistil (Ht = 33.57%). The data obtained are of interest for understanding the interaction of genes of different genomes in the genus Brassica.

Multivariate micropollutants analysis in marine waters

1995 ◽  
Vol 32 (9-10) ◽  
pp. 341-348
Author(s):  
V. Librando ◽  
G. Magazzù ◽  
A. Puglisi
Keyword(s):  
Multivariate Data Analysis ◽  
Partial Least Squares Regression ◽  
Environmental Chemistry ◽  
Sampling Site ◽  
Principal Component ◽  
Least Squares Regression ◽  
Organic Micropollutants ◽  
Suspended Material ◽  
The Difference

The monitoring of water quality today provides a great quantity of data consisting of the values of the parameters measured as a function of time. In the marine environment, and especially in the suspended material, increasing importance is being given to the presence of organic micropollutants, particularly since some are known to be carcinogenic. As the number of measured parameters increases examining the data and their consequent interpretation becomes more difficult. To overcome such difficulties, numerous chemometric techniques have been introduced in environmental chemistry, such as Multivariate Data Analysis (MVDA), Principal Component Analysis (PCA) and Partial Least Squares Regression (PLSR). The use of the first technique in this work has been applied to the interpretation of the quality of Augusta bay, by measuring the concentration of numerous organic micropollutants, together with the classical water pollution parameters, in different sites and at different times. The MVDA has highlighted the difference between various sampling sites whose data were initially thought to be similar. Furthermore, it has allowed a choice of more significant parameters for future monitoring and more suitable sampling site locations.

scholarly journals Suitability Analysis of 17 Probiotic Type Strains of Lactic Acid Bacteria as Starter for Kimchi Fermentation

Foods ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 1435
Author(s):  
Hee Seo ◽  
Jae-Han Bae ◽  
Gayun Kim ◽  
Seul-Ah Kim ◽  
Byung Hee Ryu ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacteria ◽  
Growth Rates ◽  
Principal Component ◽  
Fermented Foods ◽  
Suitability Analysis ◽  
Moderate Growth ◽  
Health Promoting ◽  
Highly Correlated ◽  
Type Strains

The use of probiotic starters can improve the sensory and health-promoting properties of fermented foods. This study aimed to evaluate the suitability of probiotic lactic acid bacteria (LAB) as a starter for kimchi fermentation. Seventeen probiotic type strains were tested for their growth rates, volatile aroma compounds, metabolites, and sensory characteristics of kimchi, and their characteristics were compared to those of Leuconostoc (Le.) mesenteroides DRC 1506, a commercial kimchi starter. Among the tested strains, Limosilactobacillus fermentum, Limosilactobacillus reuteri, Lacticaseibacillus rhamnosus, Lacticaseibacillus paracasei, and Ligilactobacillus salivarius exhibited high or moderate growth rates in simulated kimchi juice (SKJ) at 37 °C and 15 °C. When these five strains were inoculated in kimchi and metabolite profiles were analyzed during fermentation using GC/MS and 1H-NMR, data from the principal component analysis (PCA) showed that L. fermentum and L. reuteri were highly correlated with Le. mesenteroides in concentrations of sugar, mannitol, lactate, acetate, and total volatile compounds. Sensory test results also indicated that these three strains showed similar sensory preferences. In conclusion, L. fermentum and L. reuteri can be considered potential candidates as probiotic starters or cocultures to develop health-promoting kimchi products.

scholarly journals Distribution and Severity of Placental Lesions Caused by the Chlamydia abortus 1B Vaccine Strain in Vaccinated Ewes

Pathogens ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 543
Author(s):  
Sergio Gastón Caspe ◽  
Javier Palarea-Albaladejo ◽  
Clare Underwood ◽  
Morag Livingstone ◽  
Sean Ranjan Wattegedera ◽  
...  
Keyword(s):  
Disease Outbreaks ◽  
Principal Component ◽  
Placental Pathology ◽  
Wild Type ◽  
Cell Infiltrate ◽  
Chlamydia Abortus ◽  
Vaccine Type ◽  
The Difference ◽  
Enzootic Abortion Of Ewes

Chlamydia abortus infects livestock species worldwide and is the cause of enzootic abortion of ewes (EAE). In Europe, control of the disease is achieved using a live vaccine based on C. abortus 1B strain. Although the vaccine has been useful for controlling disease outbreaks, abortion events due to the vaccine have been reported. Recently, placental pathology resulting from a vaccine type strain (vt) infection has been reported and shown to be similar to that resulting from a natural wild-type (wt) infection. The aim of this study was to extend these observations by comparing the distribution and severity of the lesions, the composition of the predominating cell infiltrate, the amount of bacteria present and the role of the blood supply in infection. A novel system for grading the histological and pathological features present was developed and the resulting multi-parameter data were statistically transformed for exploration and visualisation through a tailored principal component analysis (PCA) to evaluate the difference between them. The analysis provided no evidence of meaningful differences between vt and wt strains in terms of the measured pathological parameters. The study also contributes a novel methodology for analysing the progression of infection in the placenta for other abortifacient pathogens.

scholarly journals Possibility of Human Gender Recognition Using Raman Spectra of Teeth

Molecules ◽  
2021 ◽  
Vol 26 (13) ◽  
pp. 3983
Author(s):  
Ozren Gamulin ◽  
Marko Škrabić ◽  
Kristina Serec ◽  
Matej Par ◽  
Marija Baković ◽  
...  
Keyword(s):  
Raman Spectra ◽  
Principal Component ◽  
Support Vector ◽  
Gender Recognition ◽  
Proof Of Concept ◽  
Male And Female ◽  
Tooth Type ◽  
Tooth Apex ◽  
The Difference

Gender determination of the human remains can be very challenging, especially in the case of incomplete ones. Herein, we report a proof-of-concept experiment where the possibility of gender recognition using Raman spectroscopy of teeth is investigated. Raman spectra were recorded from male and female molars and premolars on two distinct sites, tooth apex and anatomical neck. Recorded spectra were sorted into suitable datasets and initially analyzed with principal component analysis, which showed a distinction between spectra of male and female teeth. Then, reduced datasets with scores of the first 20 principal components were formed and two classification algorithms, support vector machine and artificial neural networks, were applied to form classification models for gender recognition. The obtained results showed that gender recognition with Raman spectra of teeth is possible but strongly depends both on the tooth type and spectrum recording site. The difference in classification accuracy between different tooth types and recording sites are discussed in terms of the molecular structure difference caused by the influence of masticatory loading or gender-dependent life events.

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