Phylogenetic analysis and biogeography of Aegean taxa of the genus Dendarus (Coleoptera: Tenebrionidae)

2003 ◽  
Vol 34 (3) ◽  
pp. 295-312 ◽  
Author(s):  
◽  
◽  
◽  
Keyword(s):  
Phylogenetic Analysis ◽  
Strong Support ◽  
Component Analysis ◽  
Aegean Islands ◽  
Duplication Events ◽  
History Of ◽  
Tree Length ◽  
Species Groups ◽  
The Mediterranean Basin ◽  
Coleoptera Tenebrionidae

AbstractThe genus Dendarus Latr. is distributed throughout the Mediterranean basin with numerous species in the Aegean islands. This paper presents a phylogenetic analysis and the biogeography of most taxa present in the area. Phylogenetic analysis of two outgroup and 25 ingroup taxa based on adult morphology, including 50 characters and 119 character states, produced two equally parsimonious trees (tree length = 148, C.I. = 0.42, R.I. = 0.70, R.C. = 0.294). These trees provide strong support for the monophyly of Dendarus and also define four species groups: the foraminosus group, present mainly on the island of Crete; the rhodius group, present in Dodecanese islands, the sinuatus group present in the central Aegean islands, and another group consisting of taxa from mainland Greece (D. messenius, D. caelatus, D. tenellus, and D. plicatulus paganettii). All area cladograms produced by Compatibility Component Analysis, Brooks Parsimony Analysis, and especially by Component Analysis, correspond quite closely to the hypothesized palaeogeographic history of the studied area and therefore partly support the idea of a vicariant evolution of Dendarus taxa in this region. We distinguished certain monophyletic groups distributed (with some exceptions) within well-defined geographical and palaeogeographical regions of the Aegean. However, we found certain inconsistencies (with Reconciled Tree Analysis) that are probably the result of dispersal, extinction, or duplication events that are independent of the sequence of vicariance events.

scholarly journals Simulium (Trichodagmia) (Diptera, Simuliidae) phylogeny revisited: the Neotropical and Afrotropical connection

2021 ◽  
Vol 773 ◽  
Author(s):  
Óscar S. Molina ◽  
Leonardo H. Gil-Azevedo
Keyword(s):  
Phylogenetic Analysis ◽  
Classification System ◽  
Species Group ◽  
Data Matrix ◽  
New Classification ◽  
Neotropical Species ◽  
New Subgenus ◽  
History Of ◽  
Phylogenetic Framework ◽  
Species Groups

Simulium (Trichodagmia) Enderlein, 1934 has an unstable classification system. The broader concept of the subgenus includes five species-groups resulting from an extensive history of synonymisations, often outside of a phylogenetic framework. This concept also ignores relationship hypotheses with the Afrotropical subgenera S. (Anasolen) Enderlein, 1930, S. (Freemanellum) Crosskey, 1969, S. (Xenosimulium) Crosskey, 1969, and the Oviedoi species-group, with several Neotropical species of S. (Trichodagmia). We performed a morphological phylogenetic analysis to test the monophyly of S. (Trichodagmia), its species-groups, and their relationship with the above-mentioned subgenera and Oviedoi species-group. We analysed a data matrix with 69 terminal taxa and 62 characters under parsimony implied weights, with a range of concavities (k1–100), finding three categories of k. Our analysis concludes that S. (Trichodagmia) is not monophyletic, since Oviedoi and the Afrotropical subgenera group with its species-groups Tarsatum and Orbitale. Therefore, we propose a new classification for S. (Trichodagmia) by restricting it to the Orbitale species-group, revalidating S. (Hearlea) Vargas et al., 1946, S. (Hemicnetha) Enderlein, 1934, S. (Obuchovia) Rubtsov, 1947 and S. (Shewellomyia) Peterson, 1975, synonymysing S. (Xenosimulium) with S. (Anasolen), and erecting a new subgenus, S. (Disculter) subgen. nov. for Oviedoi. The geographical distribution of the groups involved is discussed.

An expanded phylogenetic analysis of Austrostipa (Poaceae: Stipeae) to test infrageneric relationships

2012 ◽  
Vol 25 (1) ◽  
pp. 1 ◽  
Author(s):  
Anna E. Syme ◽  
Daniel J. Murphy ◽  
Gareth D. Holmes ◽  
Stuart Gardner ◽  
Rachael Fowler ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Sequence Data ◽  
Strong Support ◽  
Molecular Data ◽  
Species Level ◽  
Internal Transcribed Spacer Region ◽  
Deep Coalescence ◽  
History Of ◽  
Levels Of Support

Although the Australasian grass genus Austrostipa is species rich, abundant and ecologically significant, the subgeneric classification of its 62 species has not been comprehensively tested with molecular data. We used three molecular markers from 51 species to determine a phylogeny of the genus and found strong support for the following seven of the existing subgenera: Falcatae, Austrostipa, Aulax, Lobatae, Bambusina, Lancea and Longiaristatae. The molecular data do not support Tuberculatae and Eremophilae, which could be combined with subgenus Austrostipa. The data are equivocal or insufficient regarding monophyly of Ceres, Arbuscula, Petaurista and Lanterna. Data from the nuclear internal transcribed spacer region appear to be suitable for phylogenetic analysis of this group, and the degree of sequence variability resolves species-level relationships with good levels of support. In contrast, chloroplast sequence data from the matK and rbcL genes do not resolve most relationships at the species level, and the inferred phylogeny hints at gene duplication, chloroplast capture, or deep coalescence in the evolutionary history of Austrostipa.

Systematics and biogeography of the Australian – New Guinean genus Thoris Pascoe (Coleoptera : Cerambycidae : Phoracanthini)

1994 ◽  
Vol 8 (4) ◽  
pp. 839 ◽  
Author(s):  
Q Wang ◽  
IWB Thornton ◽  
TR New
Keyword(s):  
Phylogenetic Analysis ◽  
New Guinea ◽  
Geological History ◽  
History Of ◽  
Present Distribution ◽  
Species Groups

The genus Thoris Pascoe is revised. Two species are described as new: T. octoguttata from Australia and T. brandti from New Guinea. Diagnoses of all other species are given and their terminaha described. T. moerens Blackburn is transferred to Allotisis Pascoe. A key to the eight species is provided. Phylogenetic analysis suggests that this genus be divided into three species-groups: the gilesi-group, the quinqueguttata-group and the septemguttata-group. Biogeographic implications of the genus are discussed on the basis of the genus' proposed phylogeny, present distribution and geological history of New Guinea and Australia.

Phylogenetic Analysis of T-Box Genes Demonstrates the Importance of Amphioxus for Understanding Evolution of the Vertebrate Genome

Genetics ◽  
2000 ◽  
Vol 156 (3) ◽  
pp. 1249-1257
Author(s):  
Ilya Ruvinsky ◽  
Lee M Silver ◽  
Jeremy J Gibson-Brown
Keyword(s):  
Phylogenetic Analysis ◽  
Whole Genome Duplication ◽  
Genome Duplication ◽  
Gene Families ◽  
Vertebrate Evolution ◽  
Whole Genome ◽  
Vertebrate Genome ◽  
T Box ◽  
Genetic Complexity ◽  
History Of

Abstract The duplication of preexisting genes has played a major role in evolution. To understand the evolution of genetic complexity it is important to reconstruct the phylogenetic history of the genome. A widely held view suggests that the vertebrate genome evolved via two successive rounds of whole-genome duplication. To test this model we have isolated seven new T-box genes from the primitive chordate amphioxus. We find that each amphioxus gene generally corresponds to two or three vertebrate counterparts. A phylogenetic analysis of these genes supports the idea that a single whole-genome duplication took place early in vertebrate evolution, but cannot exclude the possibility that a second duplication later took place. The origin of additional paralogs evident in this and other gene families could be the result of subsequent, smaller-scale chromosomal duplications. Our findings highlight the importance of amphioxus as a key organism for understanding evolution of the vertebrate genome.

scholarly journals Two Complete Mitochondrial Genomes of Mileewinae (Hemiptera: Cicadellidae) and a Phylogenetic Analysis

Insects ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 668
Author(s):  
Tinghao Yu ◽  
Yalin Zhang
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Phylogenetic Trees ◽  
Strong Support ◽  
Intergenic Spacer ◽  
Taxonomic Status ◽  
Start Codon ◽  
Gene Arrangement ◽  
Mitochondrial Genomes ◽  
Protein Coding

More studies are using mitochondrial genomes of insects to explore the sequence variability, evolutionary traits, monophyly of groups and phylogenetic relationships. Controversies remain on the classification of the Mileewinae and the phylogenetic relationships between Mileewinae and other subfamilies remain ambiguous. In this study, we present two newly completed mitogenomes of Mileewinae (Mileewa rufivena Cai and Kuoh 1997 and Ujna puerana Yang and Meng 2010) and conduct comparative mitogenomic analyses based on several different factors. These species have quite similar features, including their nucleotide content, codon usage of protein genes and the secondary structure of tRNA. Gene arrangement is identical and conserved, the same as the putative ancestral pattern of insects. All protein-coding genes of U. puerana began with the start codon ATN, while 5 Mileewa species had the abnormal initiation codon TTG in ND5 and ATP8. Moreover, M. rufivena had an intergenic spacer of 17 bp that could not be found in other mileewine species. Phylogenetic analysis based on three datasets (PCG123, PCG12 and AA) with two methods (maximum likelihood and Bayesian inference) recovered the Mileewinae as a monophyletic group with strong support values. All results in our study indicate that Mileewinae has a closer phylogenetic relationship to Typhlocybinae compared to Cicadellinae. Additionally, six species within Mileewini revealed the relationship (U. puerana + (M. ponta + (M. rufivena + M. alara) + (M. albovittata + M. margheritae))) in most of our phylogenetic trees. These results contribute to the study of the taxonomic status and phylogenetic relationships of Mileewinae.

scholarly journals Molecular Phylogenetic Analysis of the AIG Family in Vertebrates

Genes ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1190
Author(s):  
Yuqi Huang ◽  
Minghao Sun ◽  
Lenan Zhuang ◽  
Jin He
Keyword(s):  
Phylogenetic Analysis ◽  
Gene Family ◽  
Functional Characterization ◽  
Vertebrate Evolution ◽  
Molecular Phylogenetic Analysis ◽  
Whole Genome Duplications ◽  
Genome Duplications ◽  
Molecular Phylogenetic ◽  
Duplication Events ◽  
Inducible Genes

Androgen-inducible genes (AIGs), which can be regulated by androgen level, constitute a group of genes characterized by the presence of the AIG/FAR-17a domain in its protein sequence. Previous studies on AIGs demonstrated that one member of the gene family, AIG1, is involved in many biological processes in cancer cell lines and that ADTRP is associated with cardiovascular diseases. It has been shown that the numbers of AIG paralogs in humans, mice, and zebrafish are 2, 2, and 3, respectively, indicating possible gene duplication events during vertebrate evolution. Therefore, classifying subgroups of AIGs and identifying the homologs of each AIG member are important to characterize this novel gene family further. In this study, vertebrate AIGs were phylogenetically grouped into three major clades, ADTRP, AIG1, and AIG-L, with AIG-L also evident in an outgroup consisting of invertebrsate species. In this case, AIG-L, as the ancestral AIG, gave rise to ADTRP and AIG1 after two rounds of whole-genome duplications during vertebrate evolution. Then, the AIG family, which was exposed to purifying forces during evolution, lost or gained some of its members in some species. For example, in eutherians, Neognathae, and Percomorphaceae, AIG-L was lost; in contrast, Salmonidae and Cyprinidae acquired additional AIG copies. In conclusion, this study provides a comprehensive molecular phylogenetic analysis of vertebrate AIGs, which can be employed for future functional characterization of AIGs.

Discovery of New Genera Challenges the Subtribal Classification of Tok-Tok Beetles (Coleoptera: Tenebrionidae: Sepidiini)

2021 ◽  
Vol 5 (2) ◽  
Author(s):  
Olivia M Gearner ◽  
Marcin J Kamiński ◽  
Kojun Kanda ◽  
Kali Swichtenberg ◽  
Aaron D Smith
Keyword(s):  
Dna Sequences ◽  
Species Group ◽  
Phylogenetic Placement ◽  
Darkling Beetles ◽  
Species Groups ◽  
Taxonomic Groups ◽  
Inference Methods ◽  
A New Species ◽  
Coleoptera Tenebrionidae

Abstract Sepidiini is a speciose tribe of desert-inhabiting darkling beetles, which contains a number of poorly defined taxonomic groups and is in need of revision at all taxonomic levels. In this study, two previously unrecognized lineages were discovered, based on morphological traits, among the extremely speciose genera Psammodes Kirby, 1819 (164 species and subspecies) and Ocnodes Fåhraeus, 1870 (144 species and subspecies), namely the Psammodes spinosus species-group and Ocnodes humeralis species-group. In order to test their phylogenetic placement, a phylogeny of the tribe was reconstructed based on analyses of DNA sequences from six nonoverlapping genetic loci (CAD, wg, COI JP, COI BC, COII, and 28S) using Bayesian and maximum likelihood inference methods. The aforementioned, morphologically defined, species-groups were recovered as distinct and well-supported lineages within Molurina + Phanerotomeina and are interpreted as independent genera, respectively, Tibiocnodes Gearner & Kamiński gen. nov. and Tuberocnodes Gearner & Kamiński gen. nov. A new species, Tuberocnodes synhimboides Gearner & Kamiński sp. nov., is also described. Furthermore, as the recovered phylogenetic placement of Tibiocnodes and Tuberocnodes undermines the monophyly of Molurina and Phanerotomeina, an analysis of the available diagnostic characters for those subtribes is also performed. As a consequence, Phanerotomeina is considered as a synonym of the newly redefined Molurina sens. nov. Finally, spectrograms of vibrations produced by substrate tapping of two Molurina species, Toktokkus vialis (Burchell, 1822) and T. synhimboides, are presented.

scholarly journals Extensive introgression and mosaic genomes of Mediterranean endemic lizards

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Weizhao Yang ◽  
Nathalie Feiner ◽  
Catarina Pinho ◽  
Geoffrey M. While ◽  
Antigoni Kaliontzopoulou ◽  
...  
Keyword(s):  
Evolutionary History ◽  
Mediterranean Islands ◽  
The Past ◽  
Island Endemics ◽  
Extant Species ◽  
Mediterranean Island ◽  
History Of ◽  
Entire History ◽  
The Mediterranean ◽  
The Mediterranean Basin

AbstractThe Mediterranean basin is a hotspot of biodiversity, fuelled by climatic oscillation and geological change over the past 20 million years. Wall lizards of the genus Podarcis are among the most abundant, diverse, and conspicuous Mediterranean fauna. Here, we unravel the remarkably entangled evolutionary history of wall lizards by sequencing genomes of 34 major lineages covering 26 species. We demonstrate an early (>11 MYA) separation into two clades centred on the Iberian and Balkan Peninsulas, and two clades of Mediterranean island endemics. Diversification within these clades was pronounced between 6.5–4.0 MYA, a period spanning the Messinian Salinity Crisis, during which the Mediterranean Sea nearly dried up before rapidly refilling. However, genetic exchange between lineages has been a pervasive feature throughout the entire history of wall lizards. This has resulted in a highly reticulated pattern of evolution across the group, characterised by mosaic genomes with major contributions from two or more parental taxa. These hybrid lineages gave rise to several of the extant species that are endemic to Mediterranean islands. The mosaic genomes of island endemics may have promoted their extraordinary adaptability and striking diversity in body size, shape and colouration, which have puzzled biologists for centuries.

Beyond Wallace: a new lineage of Chrysorthenches (Lepidoptera: Yponomeutoidea: Glyphipterigidae) reveals a journey tracking its host-plants, Podocarpus (Pinopsida: Podocarpaceae)

2020 ◽  
Vol 190 (2) ◽  
pp. 709-736
Author(s):  
Jae-Cheon Sohn ◽  
Shigeki Kobayashi ◽  
Yutaka Yoshiyasu
Keyword(s):  
Maximum Likelihood ◽  
East Asia ◽  
Host Plants ◽  
Morphological Characters ◽  
Species Group ◽  
Geological History ◽  
Dna Barcodes ◽  
History Of ◽  
Species Groups ◽  
Maximum Likelihood Phylogeny

Abstract A northward trans-Wallacean radiation is demonstrated for Chrysorthenches, a member of the Orthenches group. Here we review Chrysorthenches and allied genera resulting in a generic transfer of Diathryptica callibrya to Chrysorthenches and two new congeners: C. muraseaeSohn & Kobayashisp. nov. from Japan and C. smaragdinaSohnsp. nov. from Thailand. We review morphological characters of Chrysorthenches and allied genera, and find polyphyly of Diathryptica and the association of the Orthenches-group with Glyphipterigidae. These findings were supported in a maximum likelihood phylogeny of DNA barcodes from ten yponomeutoids. We analysed 30 morphological characters for 12 species of Chrysorthenches, plus one outgroup, via a cladistic approach. The resulting cladogram redefined two pre-existing Chrysorthenches species-groups and identified one novel lineage: the C. callibrya species-group. We review the host associations between Chrysorthenches and Podocarpaceae, based on mapping the working phylogenies. Our review suggests that ancestral Chrysorthenches colonized Podocarpus and later shifted to other podocarp genera. Biogeographical patterns of Chrysorthenches show that they evolved long after the Podocarpaceae radiation. Disjunctive trans-Wallacean distribution of the C. callibrya species-group is possibly related to the tracking of their host-plants and the complicated geological history of the island-arc system connecting Australia and East Asia.

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