Nia lenicarpa sp. nov. (Niaceae, Agaricales) from Red Sea mangroves in Saudi Arabia with comments on Nia vibrissa

Phytotaxa ◽  
2019 ◽  
Vol 406 (3) ◽  
pp. 157-168 ◽  
Author(s):  
MOHAMED A. ABDEL-WAHAB ◽  
E. B. GARETH JONES ◽  
FATEN A. ABDEL-AZIZ ◽  
ALI H. BAHKALI
Keyword(s):  
Saudi Arabia ◽  
Cryptic Species ◽  
Red Sea ◽  
Phylogenetic Analyses ◽  
Avicennia Marina ◽  
Molecular Data ◽  
The Other ◽  
Lsu Rdna ◽  
Decayed Wood ◽  
Monophyletic Clade

An undescribed Nia species was recorded from intertidal decayed wood of Avicennia marina collected from Red Sea mangroves in Saudi Arabia. Nia lenicarpa sp. nov. is characterized by smooth basidiomes, growing singly or in groups of 2 to 10 confluent basidiomes, with a three-layered, thick peridium and 4-spored basidia. Nia lenicarpa differs from N. vibrissa by having smaller basidiomes without peridial hairs but with thick peridia, larger basidia and basidiospores. Phylogenetic analyses of SSU and LSU rDNA placed N. lenicarpa in a monophyletic clade with two N. vibrissa clades. There are no molecular data available for the other two Nia species; N. epidermoidea and N. globispora. The morphology of N. vibrissa from driftwood collected from a beach in Japan is illustrated. Vertical sections of basidiomes of the Japanese material showed the presence of an outer peridium that is formed by the tips of the peridial hairs which was not reported before. This supports the presence of several cryptic species in the N. vibrissa complex.

Two new species of Kallichroma (Bionectriaceae, Hypocreales) from Saudi Arabian mangroves

Phytotaxa ◽  
2016 ◽  
Vol 260 (1) ◽  
pp. 66 ◽  
Author(s):  
MOHAMED A. ABDEL-WAHAB ◽  
ALI H. BAHKALI ◽  
E. B. GARETH JONES ◽  
ABDALLAH M. ELGORBAN ◽  
FATEN A. ABDEL-AZIZ ◽  
...  
Keyword(s):  
Saudi Arabia ◽  
New Species ◽  
Gulf Coast ◽  
Phylogenetic Analyses ◽  
Arabian Gulf ◽  
Avicennia Marina ◽  
Lsu Rdna ◽  
Rdna Sequences ◽  
The Family ◽  
Two New Species

During an ongoing study of marine fungi in Saudi Arabia, two undescribed Kallichroma species were recorded from decayed intertidal wood of Avicennia marina from two mangrove stands along the Red Sea coast and the Arabian Gulf coast in Saudi Arabia. Kallichroma asperum sp. nov. is characterized by rough ascospores cell walls surrounded by a granular sheath. Kallichroma ellipsoideum sp. nov. is characterized by its small sized hyaline ascomata, asci and ascospores. Both new species have 3 or 8-spored asci and perithecoid or confluent ascomata with large, globose papillae. Phylogenetic analyses of the combined SSU and LSU rDNA sequences placed the two new species in the family Bionectriaceae.

A Nabatean port on the Red Sea: note on the pottery finds from al-Qusayr (al-Wajh, Saudi Arabia)

2020 ◽  
Author(s):  
Caroline Durand
Keyword(s):  
Saudi Arabia ◽  
19Th Century ◽  
Red Sea ◽  
Point Of View ◽  
The Other ◽  
Trade Routes ◽  
Other Hand ◽  
Roman Egypt ◽  
Pottery Sherds ◽  
First Time

Al-Qusayr is located 40 km south of modern al-Wajh, roughly 7 km from the eastern Red Sea shore. This site is known since the mid-19th century, when the explorer R. Burton described it for the first time, in particular the remains of a monumental building so-called al-Qasr. In March 2016, a new survey of the site was undertaken by the al-‘Ula–al-Wajh Survey Project. This survey focused not only on al-Qasr but also on the surrounding site corresponding to the ancient settlement. A surface collection of pottery sherds revealed a striking combination of Mediterranean and Egyptian imports on one hand, and of Nabataean productions on the other hand. This material is particularly homogeneous on the chronological point of view, suggesting a rather limited occupation period for the site. Attesting contacts between Mediterranean merchants, Roman Egypt and the Nabataean kingdom, these new data allow a complete reassessment of the importance of this locality in the Red Sea trade routes during antiquity.

Cryptic species complexes in manipulative echinostomatid trematodes: when two become six

Parasitology ◽  
2008 ◽  
Vol 136 (2) ◽  
pp. 241-252 ◽  
Author(s):  
T. L. F. LEUNG ◽  
D. B. KEENEY ◽  
R. POULIN
Keyword(s):  
Cryptic Species ◽  
Phylogenetic Analyses ◽  
Morphological Characteristics ◽  
Single Species ◽  
Distinct Species ◽  
Molecular Data ◽  
Spatial Segregation ◽  
Small Scale ◽  
Intermediate Hosts ◽  
Species Complexes

SUMMARYRecent studies have shown that some digenean trematodes previously identified as single species due to the lack of distinguishing morphological characteristics actually consist of a number of genetically distinct cryptic species. We obtained mitochondrial 16S and nuclear ITS1 sequences for the redial stages of Acanthoparyphium sp. and Curtuteria australis collected from snails and whelks at various locations around Otago Peninsula, New Zealand. These two echinostomes are well-known host manipulators whose impact extends to the entire intertidal community. Using phylogenetic analyses, we found that Acanthoparyphium sp. is actually composed of at least 4 genetically distinct species, and that a cryptic species of Curtuteria occurs in addition to C. australis. Molecular data obtained for metacercariae dissected from cockle second intermediate hosts matched sequences obtained for Acanthoparyphium sp. A and C. australis rediae, respectively, but no other species. The various cryptic species of both Acanthoparyphium and Curtuteria also showed an extremely localized pattern of distribution: some species were either absent or very rare in Otago Harbour, but reached far higher prevalence in nearby sheltered inlets. This small-scale spatial segregation is unexpected as shorebird definitive hosts can disperse trematode eggs across wide geographical areas, which should result in a homogeneous mixing of the species on small geographical scales. Possible explanations for this spatial segregation of the species include sampling artefacts, local adaptation by first intermediate hosts, environmental conditions, and site fidelity of the definitive hosts.

Description of Phasmarhabditis californica n. sp. and first report of P. papillosa (Nematoda: Rhabditidae) from invasive slugs in the USA

Nematology ◽  
2016 ◽  
Vol 18 (2) ◽  
pp. 175-193 ◽  
Author(s):  
Irma Tandingan De Ley ◽  
Oleksandr Holovachov ◽  
Rory J. Mc Donnell ◽  
Wim Bert ◽  
Timothy D. Paine ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Egg Laying ◽  
The Body ◽  
Lsu Rdna ◽  
New Taxon ◽  
Sequence Alignments ◽  
Single Male ◽  
The Usa ◽  
Basal Bulb

A new species ofPhasmarhabditisand the known speciesP. papillosawere isolated from cadavers of invasive slugs in California.Phasmarhabditis papillosais the type of the genus and has not previously been reported from the Americas. Both species are characterised based on morphology, morphometrics and molecular data. Molecular phylogenies were inferred from concatenated DNA sequence alignments of nearly complete SSU and the D2-D3 domains of the LSU rDNA.Phasmarhabditis californican. sp. is characterised by a robust body, mature egg-laying specimens almost spindle-shaped when relaxed, 1.5 (1.3-1.8) mm long, tapering to a bluntly rounded anterior end with stoma about as long as lip region diam., six inner labial papillae and four outer cephalic papillae, pharynx with rounded to pyriform basal bulb, vulva located halfway along the body, hermaphroditic, didelphic, amphidelphic, and short, conoid tail constricted at one-third its length with prominent phasmids. Not a single male was found among five strains.Phasmarhabditis papillosais gonochoristic and has a longer isthmus, pyriform basal bulb and longer, dome-shaped spicate female tail constricted halfway along its length. Sequence analysis revealed unambiguous autapomorphies forP. papillosaandP. californican. sp. Phylogenetic analyses placed these two species in a monophyletic clade comprisingPhasmarhabditisspecies and other gastropod-parasitic taxa. Morphology, genetic distance, reproductive strategy and nucleotide autapomorphies support the new taxon.

scholarly journals Notes on the leaf insects of the genus Phyllium of Sumatra and Java, Indonesia, including the description of two new species with purple coxae (Phasmatodea, Phylliidae)

ZooKeys ◽  
2020 ◽  
Vol 913 ◽  
pp. 89-126 ◽  
Author(s):  
Royce T. Cumming ◽  
Sarah Bank ◽  
Stephane Le Tirant ◽  
Sven Bradler
Keyword(s):  
Cryptic Species ◽  
Morphological Difference ◽  
Nuclear Gene ◽  
Molecular Data ◽  
Mitochondrial Genes ◽  
Peninsular Malaysia ◽  
The Other ◽  
Two New Species ◽  
First Time ◽  
Two Populations

Within the last two years, the leaf insects of the genus Phyllium of both the islands of Java and Sumatra have been reviewed extensively based on morphological observations. However, cryptic species which cannot be differentiated morphologically may be present among the various populations. Since it has frequently been demonstrated that analyses based on molecular data can bring clarity in such cases, we conducted a phylogenetic analysis based on three genes (nuclear gene 28S and mitochondrial genes COI and 16S) from the Phyllium species of these islands. The results show distinct molecular divergence for several populations and suggest the presence of two new cryptic species, morphologically inseparable from Phyllium hausleithneri Brock, 1999. From Sumatra, the population originally thought to be a range expansion for Phyllium hausleithneri, is now here described as Phyllium nisussp. nov., with the only consistent morphological difference being the color of the eggs between the two populations (dark brown in P. hausleithneri and tan in P. nisussp. nov.). Further, an additional population with purple coxae from Java was morphologically examined and found to have no consistent features to separate it morphologically from the other purple coxae species. This cryptic species from Java was however shown to be molecularly distinct from the other purple coxae populations from Sumatra and Peninsular Malaysia and is here described as Phyllium gardabagusisp. nov. In addition, Phyllium giganteum is here officially reported from Java for the first time based on both historic and modern records of male specimens.

scholarly journals Review of the moray eels (Anguilliformes: Muraenidae) of the Red Sea, with description of a new species

Zootaxa ◽  
2019 ◽  
Vol 4704 (1) ◽  
pp. 1-87 ◽  
Author(s):  
DAVID G. SMITH ◽  
SERGEY V. BOGORODSKY ◽  
AHMAD O. MAL ◽  
TILMAN J. ALPERMANN
Keyword(s):  
Saudi Arabia ◽  
Red Sea ◽  
New Record ◽  
Phylogenetic Analyses ◽  
Common Species ◽  
Valid Species ◽  
Nominal Species ◽  
Dorsal Fin ◽  
A New Species ◽  
Preanal Length

Thirty-eight species of moray eels (Muraenidae) from the Red Sea are reported in an updated review. A species account is provided for each species, along with a full synonymy of all nominal species described from the Red Sea. One species is new to science, G. pharaonis, and two species are new for the Red Sea, Gymnothorax phasmatodes (Smith) and Scuticaria tigrina (Lesson). Gymnothorax pharaonis n. sp. is a common species that has long been misidentified as G. undulatus (Lacepède), although it more closely resembles G. margaritophorus Bleeker, to which it is closely related phylogenetically. It is characterized by the following combination of characters: total vertebrae 123–128; body slender, depth at anus 17–28 in TL; maxillary teeth biserial, dentary and vomerine teeth in a single row; color brown with irregular dendritic pale markings, not interconnected or chain-like, with oblique, conspicuous, parallel streaks posteriorly in dorsal fin. The new record of the distinctive whitish G. phasmatodes is based on an underwater photograph taken at Jeddah, Saudi Arabia. The new record of Scuticaria tigrina is based on a specimen collected from Jeddah, Saudi Arabia, and underwater photographs taken from the northern part of the Red Sea. Based on an integrative taxonomical approach by a combination of morphological and phylogenetic analyses and re-examination of holotype specimens, Gymnothorax cinerascens (Rüppell) is resurrected as a valid species, and it is shown that previous records of G. hepaticus (Rüppell), with which it has previously been synonymized, should refer to G. cinerascens. The true G. hepaticus is redescribed based on examination of the holotype and additional specimens collected during the course of this study. The two species are distinguished by the color of the jaws, the position of the median intermaxillary teeth, and a slight difference in the preanal length. They are also clearly distinct genetically. The Red Sea record of Gymnothorax atolli (Pietschmann) is based on an error, possibly a misidentification of G. griseus (Lacepède). A key to the species of Red Sea moray eels and a phylogenetic tree of presently known lineages of Indo-Pacific moray eels are provided including recently collected Red Sea specimens. 

The taxonomic status of Cryptobatrachus frogs (Anura: Hemiphractidae) from the Serranía del Perijá

Zootaxa ◽  
2021 ◽  
Vol 5068 (2) ◽  
pp. 247-262
Author(s):  
FABIO LEONARDO MEZA-JOYA ◽  
ELIANA RAMOS ◽  
FERNANDO J. M. ROJAS-RUNJAIC ◽  
ANDRÉS OVALLE-PACHECO
Keyword(s):  
Dna Sequences ◽  
Genetic Divergence ◽  
Morphological Traits ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Molecular Data ◽  
The Other ◽  
Taxon Sampling ◽  
Morphological Similarity ◽  
Morphological And Molecular Data

The Neotropical frog genus Cryptobatrachus includes six currently recognized species distributed throughout the northern Andes in Colombia and Venezuela. Cryptobatrachus conditus, C. pedroruizi, and C. remotus were described from the Colombian and Venezuelan slopes of the Serranía del Perijá. Due to the great morphological similarity among these species, we re-assess their taxonomic status based on morphological and molecular data from types, topotypes, and specimens from localities referred to in the original descriptions of these species. Morphometric comparisons showed that all these species are virtually indistinguishable, although some subtle qualitative differences in morphological traits distinguish C. conditus from the other species. Phylogenetic analyses of DNA sequences found that C. remotus and C. pedroruizi are not reciprocally monophyletic and exhibit low genetic divergence (< 1 %). Therefore, C. remotus should be considered a junior synonym of C. pedroruizi. This work stresses the importance of comprehensive taxon sampling in poorly explored areas, especially between neighbouring countries.  

scholarly journals A supermatrix-based molecular phylogeny of the family Drosophilidae

2010 ◽  
Vol 92 (1) ◽  
pp. 25-38 ◽  
Author(s):  
KIM VAN DER LINDE ◽  
DAVID HOULE ◽  
GREG S. SPICER ◽  
SCOTT J. STEPPAN
Keyword(s):  
Drosophila Melanogaster ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Molecular Data ◽  
The Other ◽  
Bootstrap Support ◽  
Bayesian Approaches ◽  
Considerable Uncertainty ◽  
Sister Clade ◽  
The Family

SummaryThe genus Drosophila is diverse and heterogeneous and contains a large number of easy-to-rear species, so it is an attractive subject for comparative studies. The ability to perform such studies is currently compromised by the lack of a comprehensive phylogeny for Drosophila and related genera. The genus Drosophila as currently defined is known to be paraphyletic with respect to several other genera, but considerable uncertainty remains about other aspects of the phylogeny. Here, we estimate a phylogeny for 176 drosophilid (12 genera) and four non-drosophilid species, using gene sequences for up to 13 different genes per species (average: 4333 bp, five genes per species). This is the most extensive set of molecular data on drosophilids yet analysed. Phylogenetic analyses were conducted with maximum-likelihood (ML) and Bayesian approaches. Our analysis confirms that the genus Drosophila is paraphyletic with 100% support in the Bayesian analysis and 90% bootstrap support in the ML analysis. The subgenus Sophophora, which includes Drosophila melanogaster, is the sister clade of all the other subgenera as well as of most species of six other genera. This sister clade contains two large, well-supported subclades. The first subclade contains the Hawaiian Drosophila, the genus Scaptomyza, and the virilis-repleta radiation. The second contains the immigrans-tripunctata radiation as well as the genera Hirtodrosophila (except Hirtodrosophila duncani), Mycodrosophila, Zaprionus and Liodrosophila. We argue that these results support a taxonomic revision of the genus Drosophila.

Hermatomyces trangensis sp. nov., a new dematiaceous hyphomycete (Hermatomycetaceae, Pleosporales) on sugar palm in Thailand

Phytotaxa ◽  
2019 ◽  
Vol 391 (5) ◽  
pp. 277 ◽  
Author(s):  
SALILAPORN NUANKAEW ◽  
SATINEE SUETRONG ◽  
TUKSADON WUTIKHUN ◽  
UMPAWA PINRUAN
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Lateral View ◽  
Lsu Rdna ◽  
Molecular Evidence ◽  
Rdna Its ◽  
The Family ◽  
Southern Thailand ◽  
Peripheral Cells

A new species of a hyphomycetous fungus, Hermatomyces trangensis, was collected during an investigation of the diversity of palm fungi in Na Yong district, Trang province, Southern Thailand, and is introduced in this paper based on morphological and molecular evidence. The fungus is characterized by the production of only one type of conidia, globose or subglobose in front view, broadly ellipsoidal or oblong in lateral view, with dark brown to black central cells and subhyaline to pale brown peripheral cells and sporulation in culture. Phylogenetic analyses of combined SSU rDNA, LSU rDNA, ITS rDNA, TEF1 and RPB2 sequence data using maximum parsimony, maximum likelihood and Bayesian inference approaches placed the fungus within a strongly supported clade with other Hermatomyces species within the family Hermatomycetaceae (Pleosporales, Dothideomycetes). Morphologically, it is similar to other taxa with only one type of conidia such as H. sphaericus, H. sphaericoides and H. verrucosus but molecular data clearly support H. trangensis as distinct from those species.

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