scholarly journals Cyclic Dipeptides Produced by Marine Sponge-Associated Bacteria as Quorum Sensing Signals

2014 ◽  
Vol 9 (2) ◽  
pp. 1934578X1400900
Author(s):  
Gennaro Roberto Abbamondi ◽  
Salvatore De Rosa ◽  
Carmine Iodice ◽  
Giuseppina Tommonaro
Keyword(s):  
Quorum Sensing ◽  
Quorum Quenching ◽  
Marine Sponges ◽  
Bacterial Strains ◽  
Signal Molecule ◽  
Associated Bacteria ◽  
Cyclic Dipeptides ◽  
Sponge Associated Bacteria ◽  
Dysidea Avara ◽  
Quorum Sensing Signals

Four bacterial strains belonging to the genera Vibrio, Pseudoalteromonas and Photobacterium were isolated from the marine sponges Dysidea avara and Geodia cynodium. A Bacillus strain was isolated from Ircinia variabilis. A screening of molecules involved in quorum sensing (QS) was carried out by TLC-overlay and a new “plate T-streak” test. To analyze quorum quenching (QQ), a plate T-streak was performed with Chromobacterium violaceum. Strains of Vibrio isolated from both marine sponges and a strain of Photobacterium isolated from G. cynodium, activated QS bioreporters. A strain of Pseudoalteromonas isolated from D. avara showed QQ activity. Finally, it is reported that cyclic dipeptides isolated from strains of Vibrio sp. and Bacillus sp. (isolated from D. avara and I. variabilis, respectively) were involved in the QS mechanism. The simultaneous presence of bacteria that showed contrasting responses in bioassays for QS signal molecule synthesis in marine sponges could add an interesting dimension to the signalling interactions which may be happening in sponges.

scholarly journals Bacteria Isolated From the Antarctic Sponge Iophon sp. Reveals Mechanisms of Symbiosis in Sporosarcina, Cellulophaga, and Nesterenkonia

2021 ◽  
Vol 12 ◽  
Author(s):  
Mario Moreno-Pino ◽  
Juan A. Ugalde ◽  
Jorge H. Valdés ◽  
Susana Rodríguez-Marconi ◽  
Génesis Parada-Pozo ◽  
...  
Keyword(s):  
Bacterial Species ◽  
Marine Ecosystem ◽  
Marine Sponges ◽  
Bacterial Strains ◽  
Diverse Range ◽  
Associated Bacteria ◽  
Sponge Associated Bacteria ◽  
Phylogenomic Analyses ◽  
The Antarctic ◽  
Antarctic Environment

Antarctic sponges harbor a diverse range of microorganisms that perform unique metabolic functions for nutrient cycles. Understanding how microorganisms establish functional sponge–microbe interactions in the Antarctic marine ecosystem provides clues about the success of these ancient animals in this realm. Here, we use a culture-dependent approach and genome sequencing to investigate the molecular determinants that promote a dual lifestyle in three bacterial genera Sporosarcina, Cellulophaga, and Nesterenkonia. Phylogenomic analyses showed that four sponge-associated isolates represent putative novel bacterial species within the Sporosarcina and Nesterenkonia genera and that the fifth bacterial isolate corresponds to Cellulophaga algicola. We inferred that isolated sponge-associated bacteria inhabit similarly marine sponges and also seawater. Comparative genomics revealed that these sponge-associated bacteria are enriched in symbiotic lifestyle-related genes. Specific adaptations related to the cold Antarctic environment are features of the bacterial strains isolated here. Furthermore, we showed evidence that the vitamin B5 synthesis-related gene, panE from Nesterenkonia E16_7 and E16_10, was laterally transferred within Actinobacteria members. Together, these findings indicate that the genomes of sponge-associated strains differ from other related genomes based on mechanisms that may contribute to the life in association with sponges and the extreme conditions of the Antarctic environment.

scholarly journals Quorum sensing signal production by sponge-associated bacteria isolated from the Red Sea, Egypt

2017 ◽  
Vol 16 (32) ◽  
pp. 1688-1698 ◽  
Author(s):  
Yahia Ramadan ◽  
Hanora Amro ◽  
Fahmy Nora ◽  
A. Aly Khaled
Keyword(s):  
Quorum Sensing ◽  
Red Sea ◽  
Associated Bacteria ◽  
Sponge Associated Bacteria ◽  
Signal Production

scholarly journals Evolution of the quorum sensing regulon in cooperating populations of Pseudomonas aeruginosa

2021 ◽  
Author(s):  
Nicole E Smalley ◽  
Amy L Schaefer ◽  
Kyle L Asfahl ◽  
Crystal Perez ◽  
E Peter Greenberg ◽  
...  
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Quorum Sensing ◽  
Cell Communication ◽  
Opportunistic Pathogen ◽  
Quorum Quenching ◽  
Homoserine Lactone ◽  
Rna Seq ◽  
Bacterial Strains ◽  
Communication And Coordination

The bacterium Pseudomonas aeruginosa is an opportunistic pathogen and it thrives in many different saprophytic habitats. In this bacterium acyl-homoserine lactone quorum sensing (QS) can activate expression of over 100 genes, many of which code for extracellular products. P. aeruginosa has become a model for studies of cell-cell communication and coordination of cooperative activities. We hypothesized that long-term growth of bacteria under conditions where only limited QS-controlled functions were required would result in a reduction in the size of the QS-controlled regulon. To test this hypothesis, we grew P. aeruginosa for about 1000 generations in a condition in which expression of QS-activated genes is required for growth. We compared the QS regulons of populations after about 35 generations to those after about 1000 generations in two independent lineages by using quorum quenching and RNA-seq technology. In one evolved lineage the number of QS-activated genes identified was reduced by about 70% and in the other by about 45%. Our results lend important insights about the variations in the number of QS-activated genes reported for different bacterial strains and, more broadly, about the environmental histories of P. aeruginosa.

scholarly journals Characterization of a Phosphotriesterase-Like Lactonase fromSulfolobus solfataricusand Its Immobilization for Disruption of Quorum Sensing

2010 ◽  
Vol 77 (4) ◽  
pp. 1181-1186 ◽  
Author(s):  
Filomena S. W. Ng ◽  
Daniel M. Wright ◽  
Stephen Y. K. Seah
Keyword(s):  
Quorum Sensing ◽  
Virulence Factors ◽  
Acyl Chain ◽  
Quorum Quenching ◽  
Homoserine Lactone ◽  
Homoserine Lactones ◽  
Specificity Constant ◽  
Chain Lengths ◽  
Quorum Sensing Signals

ABSTRACTSsoPox, a bifunctional enzyme with organophosphate hydrolase andN-acyl homoserine lactonase activities from the hyperthermophilic archaeonSulfolobus solfataricus, was overexpressed and purified from recombinantPseudomonas putidaKT2440 with a yield of 9.4 mg of protein per liter of culture. The enzyme has a preference forN-acyl homoserine lactones (AHLs) with acyl chain lengths of at least 8 carbon atoms, mainly due to lowerKmvalues for these substrates. The highest specificity constant obtained was forN-3-oxo-decanoyl homoserine lactone (kcat/Km= 5.5 × 103M−1·s−1), but SsoPox can also degradeN-butyryl homoserine lactone (C4-HSL) andN-oxo-dodecanoyl homoserine lactone (oxo-C12-HSL), which are important for quorum sensing in ourPseudomonas aeruginosamodel system. WhenP. aeruginosaPAO1 cultures were grown in the presence of SsoPox-immobilized membranes, the production of C4-HSL- and oxo-C12-HSL-regulated virulence factors, elastase, protease, and pyocyanin were significantly reduced. This is the first demonstration that immobilized quorum-quenching enzymes can be used to attenuate the production of virulence factors controlled by quorum-sensing signals.

scholarly journals l-Canavanine Made by Medicago sativa Interferes with Quorum Sensing in Sinorhizobium meliloti

2005 ◽  
Vol 187 (24) ◽  
pp. 8427-8436 ◽  
Author(s):  
Neela D. Keshavan ◽  
Puneet K. Chowdhary ◽  
Donovan C. Haines ◽  
Juan E. González
Keyword(s):  
Quorum Sensing ◽  
Medicago Sativa ◽  
Sinorhizobium Meliloti ◽  
Signal Molecules ◽  
Bacterial Strains ◽  
Signal Molecule ◽  
Gram Negative ◽  
Bacterial Quorum Sensing ◽  
Bacterial Quorum ◽  
Regulated Gene Expression

ABSTRACT Sinorhizobium meliloti is a gram-negative soil bacterium, capable of establishing a nitrogen-fixing symbiosis with its legume host, alfalfa (Medicago sativa). Quorum sensing plays a crucial role in this symbiosis, where it influences the nodulation process and the synthesis of the symbiotically important exopolysaccharide II (EPS II). S. meliloti has three quorum-sensing systems (Sin, Tra, and Mel) that use N-acyl homoserine lactones as their quorum-sensing signal molecule. Increasing evidence indicates that certain eukaryotic hosts involved in symbiotic or pathogenic relationships with gram-negative bacteria produce quorum-sensing-interfering (QSI) compounds that can cross-communicate with the bacterial quorum-sensing system. Our studies of alfalfa seed exudates suggested the presence of multiple signal molecules capable of interfering with quorum-sensing-regulated gene expression in different bacterial strains. In this work, we choose one of these QSI molecules (SWI) for further characterization. SWI inhibited violacein production, a phenotype that is regulated by quorum sensing in Chromobacterium violaceum. In addition, this signal molecule also inhibits the expression of the S. meliloti exp genes, responsible for the production of EPS II, a quorum-sensing-regulated phenotype. We identified this molecule as l-canavanine, an arginine analog, produced in large quantities by alfalfa and other legumes.

scholarly journals Bioactivity Screening and Gene-Trait Matching across Marine Sponge-Associated Bacteria

Marine Drugs ◽  
2021 ◽  
Vol 19 (2) ◽  
pp. 75
Author(s):  
Asimenia Gavriilidou ◽  
Thomas Andrew Mackenzie ◽  
Pilar Sánchez ◽  
José Ruben Tormo ◽  
Colin Ingham ◽  
...  
Keyword(s):  
Natural Products ◽  
Gene Clusters ◽  
Marine Sponges ◽  
Genetic Associations ◽  
Bioactive Substances ◽  
Associated Bacteria ◽  
Peptide Synthetases ◽  
Sponge Associated Bacteria ◽  
High Cytotoxicity

Marine sponges harbor diverse microbial communities that represent a significant source of natural products. In the present study, extracts of 21 sponge-associated bacteria were screened for their antimicrobial and anticancer activity, and their genomes were mined for secondary metabolite biosynthetic gene clusters (BGCs). Phylogenetic analysis assigned the strains to four major phyla in the sponge microbiome, namely Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes. Bioassays identified one extract with anti-methicillin-resistant Staphylococcus aureus (MRSA) activity, and more than 70% of the total extracts had a moderate to high cytotoxicity. The most active extracts were derived from the Proteobacteria and Actinobacteria, prominent for producing bioactive substances. The strong bioactivity potential of the aforementioned strains was also evident in the abundance of BGCs, which encoded mainly beta-lactones, bacteriocins, non-ribosomal peptide synthetases (NRPS), terpenes, and siderophores. Gene-trait matching was performed for the most active strains, aiming at linking their biosynthetic potential with the experimental results. Genetic associations were established for the anti-MRSA and cytotoxic phenotypes based on the similarity of the detected BGCs with BGCs encoding natural products with known bioactivity. Overall, our study highlights the significance of combining in vitro and in silico approaches in the search of novel natural products of pharmaceutical interest.

scholarly journals Assessing the Diversity and Biomedical Potential of Microbes Associated With the Neptune’s Cup Sponge, Cliona patera

2021 ◽  
Vol 12 ◽  
Author(s):  
Xin Yi Ho ◽  
Nursheena Parveen Katermeran ◽  
Lindsey Kane Deignan ◽  
Ma Yadanar Phyo ◽  
Ji Fa Marshall Ong ◽  
...  
Keyword(s):  
Quorum Sensing ◽  
Temporal Stability ◽  
Marine Sponges ◽  
Molecular Networks ◽  
Sponge Tissue ◽  
Prokaryotic Community ◽  
Bacterial Strains ◽  
Tissue Samples ◽  
Bacterial Phyla ◽  
Organic Extracts

Marine sponges are known to host a complex microbial consortium that is essential to the health and resilience of these benthic invertebrates. These sponge-associated microbes are also an important source of therapeutic agents. The Neptune’s Cup sponge, Cliona patera, once believed to be extinct, was rediscovered off the southern coast of Singapore in 2011. The chance discovery of this sponge presented an opportunity to characterize the prokaryotic community of C. patera. Sponge tissue samples were collected from the inner cup, outer cup and stem of C. patera for 16S rRNA amplicon sequencing. C. patera hosted 5,222 distinct OTUs, spanning 26 bacterial phyla, and 74 bacterial classes. The bacterial phylum Proteobacteria, particularly classes Gammaproteobacteria and Alphaproteobacteria, dominated the sponge microbiome. Interestingly, the prokaryotic community structure differed significantly between the cup and stem of C. patera, suggesting that within C. patera there are distinct microenvironments. Moreover, the cup of C. patera had lower diversity and evenness as compared to the stem. Quorum sensing inhibitory (QSI) activities of selected sponge-associated marine bacteria were evaluated and their organic extracts profiled using the MS-based molecular networking platform. Of the 110 distinct marine bacterial strains isolated from sponge samples using culture-dependent methods, about 30% showed quorum sensing inhibitory activity. Preliminary identification of selected QSI active bacterial strains revealed that they belong mostly to classes Alphaproteobacteria and Bacilli. Annotation of the MS/MS molecular networkings of these QSI active organic extracts revealed diverse classes of natural products, including aromatic polyketides, siderophores, pyrrolidine derivatives, indole alkaloids, diketopiperazines, and pyrone derivatives. Moreover, potential novel compounds were detected in several strains as revealed by unique molecular families present in the molecular networks. Further research is required to determine the temporal stability of the microbiome of the host sponge, as well as mining of associated bacteria for novel QS inhibitors.

Characterization of Quorum Sensing Signals in Coral-Associated Bacteria

2011 ◽  
Vol 61 (4) ◽  
pp. 783-792 ◽  
Author(s):  
Karina Golberg ◽  
Evgeni Eltzov ◽  
Maya Shnit-Orland ◽  
Robert S. Marks ◽  
Ariel Kushmaro
Keyword(s):  
Quorum Sensing ◽  
Associated Bacteria ◽  
Quorum Sensing Signals
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