scholarly journals Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

BMC Genomics ◽  
2016 ◽  
Vol 17 (1) ◽  
Author(s):  
P. Gramazio ◽  
J. Blanca ◽  
P. Ziarsolo ◽  
F. J. Herraiz ◽  
M. Plazas ◽  
...  
Gene ◽  
2014 ◽  
Vol 533 (2) ◽  
pp. 494-499 ◽  
Author(s):  
Yul-Kyun Ahn ◽  
Swati Tripathi ◽  
Jeong-Ho Kim ◽  
Young-Il Cho ◽  
Hye-Eun Lee ◽  
...  

Plant Gene ◽  
2021 ◽  
Vol 26 ◽  
pp. 100278
Author(s):  
Pallavi Mishra ◽  
A.N. Tripathi ◽  
Sarvesh P. Kashyap ◽  
Mohd Aamir ◽  
Kavindra N. Tiwari ◽  
...  

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Inés González-Castellano ◽  
Chiara Manfrin ◽  
Alberto Pallavicini ◽  
Andrés Martínez-Lage

Abstract Background The common littoral shrimp Palaemon serratus is an economically important decapod resource in some European communities. Aquaculture practices prevent the genetic deterioration of wild stocks caused by overfishing and at the same time enhance the production. The biotechnological manipulation of sex-related genes has the proved potential to improve the aquaculture production but the scarcity of genomic data about P. serratus hinders these applications. RNA-Seq analysis has been performed on ovary and testis samples to generate a reference gonadal transcriptome. Differential expression analyses were conducted between three ovary and three testis samples sequenced by Illumina HiSeq 4000 PE100 to reveal sex-related genes with sex-biased or sex-specific expression patterns. Results A total of 224.5 and 281.1 million paired-end reads were produced from ovary and testis samples, respectively. De novo assembly of ovary and testis trimmed reads yielded a transcriptome with 39,186 transcripts. The 29.57% of the transcriptome retrieved at least one annotation and 11,087 differentially expressed genes (DEGs) were detected between ovary and testis replicates. Six thousand two hundred seven genes were up-regulated in ovaries meanwhile 4880 genes were up-regulated in testes. Candidate genes to be involved in sexual development and gonadal development processes were retrieved from the transcriptome. These sex-related genes were discussed taking into account whether they were up-regulated in ovary, up-regulated in testis or not differentially expressed between gonads and in the framework of previous findings in other crustacean species. Conclusions This is the first transcriptome analysis of P. serratus gonads using RNA-Seq technology. Interesting findings about sex-related genes from an evolutionary perspective (such as Dmrt1) and for putative future aquaculture applications (Iag or vitellogenesis genes) are reported here. We provide a valuable dataset that will facilitate further research into the reproductive biology of this shrimp.


PLoS ONE ◽  
2014 ◽  
Vol 9 (7) ◽  
pp. e102668 ◽  
Author(s):  
Hongyu Ma ◽  
Chunyan Ma ◽  
Shujuan Li ◽  
Wei Jiang ◽  
Xincang Li ◽  
...  

Shadow Sophia ◽  
2021 ◽  
pp. 84-109
Author(s):  
Celia E. Deane-Drummond

Our close relatives, chimpanzees, are known at times to be violent and aggressive. This chapter acknowledges the presence of violence, but challenges the common perception that killing is somehow ‘natural’ to our species. The chapter discusses the capacity for violence and aggression in chimpanzees as it relates to specific types of human violence. How far and to what extent did the first humans begin to show an inordinate capacity for organized violence and cruelty? How should biblical accounts of violence, animal sacrifice, and cruelty be interpreted in the light of this evidence? Treating humans as if they were animals is a way of degrading them and denying their humanity in biblical texts. Humans have the capacity to identify with their species and use misappropriated language towards other, often domesticated, species in a way that is deliberately cruel. The chapter will argue that the capacity for warfare and cruelty in humans does not simply build on aggressive behaviour found in other animal societies or towards other animals, but involves instead a deliberative and cooperative capacity that is highly distinctive for our lineage. Such insights need to be qualified in the light of capacities for reconciliation and, with the onset of warfare, strategic peacefare.


2019 ◽  
Vol 11 (1) ◽  
pp. 9-12
Author(s):  
Seheryeli Yılmaz ◽  
Osman Sabuncuoglu

Family building (FB) is a building where residents of different flats are close relatives. Being quite common in metropolitan areas, these unique psychosocial environments remain underexamined. We aimed to research into the interactions within the family and psychosocial features of FBs. One hundred and one children living in FBs and FB-experiences of their parents were assessed by semi-structured interviews using K-SADS-PL. Mothers scored their satisfaction from FB-lifestyle in the scale of 0-100. The sample consisted of 35 girls and 66 boys. Mean age was 108±37.4 months. ADHD and anxiety disorders were the common diagnoses. Eighty-two families lived with paternal relatives. Number of relative-neighbors in the building changed between 2-10. Forty-one mothers scored ?50 for their satisfaction; 58% believed FBs affected their children's symptoms negatively. Examining the perceived advantages and disadvantages of FBs, ‘extreme criticism' and ‘social support' were the decisive items to predict mothers' satisfaction levels. Having both positive and negative effects, FB-lifestyle seem to complicate interpersonal relations within the family. This study has revealed some preliminary findings, but further studies are required in the field.


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