Multitrace first-break picking using an integrated seismic and machine learning method

Geophysics ◽  
2020 ◽  
Vol 85 (4) ◽  
pp. WA269-WA277
Author(s):  
Xudong Duan ◽  
Jie Zhang
Keyword(s):  
Machine Learning ◽  
Network Architecture ◽  
Recall Rate ◽  
Training Data ◽  
Data Sets ◽  
Validation Data ◽  
3D Data ◽  
Training Samples ◽  
Human Effort ◽  
2D And 3D

Picking the first breaks from seismic data is often a challenging problem and still requires significant human effort. We have developed an iterative process that applies a traditional seismic automated picking method to obtain preliminary first breaks and then uses a machine learning (ML) method to identify, remove, and fix poor picks based on a multitrace analysis. The ML method involves constructing a convolutional neural network architecture to help identify poor picks across multiple traces and eliminate them. We then further refill the picks on empty traces with the help of the trained model. To allow training samples applicable to various regions and different data sets, we apply moveout correction with preliminary picks and address the picks in the flattened input. We collect 11,239,800 labeled seismic traces. During the training process, the model’s classification accuracy on the training and validation data sets reaches 98.2% and 97.3%, respectively. We also evaluate the precision and recall rate, both of which exceed 94%. For prediction, the results of 2D and 3D data sets that differ from the training data sets are used to demonstrate the feasibility of our method.

LDpred-funct: incorporating functional priors improves polygenic prediction accuracy in UK Biobank and 23andMe data sets

2018 ◽  
Author(s):  
Carla Márquez-Luna ◽  
Steven Gazal ◽  
Po-Ru Loh ◽  
Samuel S. Kim ◽  
Nicholas Furlotte ◽  
...  
Keyword(s):  
Complex Traits ◽  
Prediction Accuracy ◽  
Causal Effect ◽  
Complex Trait ◽  
Training Data ◽  
Data Sets ◽  
Uk Biobank ◽  
Validation Data ◽  
Functional Regions ◽  
The Uk

AbstractGenetic variants in functional regions of the genome are enriched for complex trait heritability. Here, we introduce a new method for polygenic prediction, LDpred-funct, that leverages trait-specific functional priors to increase prediction accuracy. We fit priors using the recently developed baseline-LD model, which includes coding, conserved, regulatory and LD-related annotations. We analytically estimate posterior mean causal effect sizes and then use cross-validation to regularize these estimates, improving prediction accuracy for sparse architectures. LDpred-funct attained higher prediction accuracy than other polygenic prediction methods in simulations using real genotypes. We applied LDpred-funct to predict 21 highly heritable traits in the UK Biobank. We used association statistics from British-ancestry samples as training data (avg N=373K) and samples of other European ancestries as validation data (avg N=22K), to minimize confounding. LDpred-funct attained a +4.6% relative improvement in average prediction accuracy (avg prediction R2=0.144; highest R2=0.413 for height) compared to SBayesR (the best method that does not incorporate functional information). For height, meta-analyzing training data from UK Biobank and 23andMe cohorts (total N=1107K; higher heritability in UK Biobank cohort) increased prediction R2 to 0.431. Our results show that incorporating functional priors improves polygenic prediction accuracy, consistent with the functional architecture of complex traits.

SaltSeg: Automatic 3D salt segmentation using a deep convolutional neural network

2019 ◽  
Vol 7 (3) ◽  
pp. SE113-SE122 ◽  
Author(s):  
Yunzhi Shi ◽  
Xinming Wu ◽  
Sergey Fomel
Keyword(s):  
Large Scale ◽  
Model Building ◽  
Ground Truth ◽  
Velocity Model ◽  
Training Data ◽  
Data Sets ◽  
Validation Data ◽  
Data Set ◽  
Seismic Image ◽  
Data Generator

Salt boundary interpretation is important for the understanding of salt tectonics and velocity model building for seismic migration. Conventional methods consist of computing salt attributes and extracting salt boundaries. We have formulated the problem as 3D image segmentation and evaluated an efficient approach based on deep convolutional neural networks (CNNs) with an encoder-decoder architecture. To train the model, we design a data generator that extracts randomly positioned subvolumes from large-scale 3D training data set followed by data augmentation, then feed a large number of subvolumes into the network while using salt/nonsalt binary labels generated by thresholding the velocity model as ground truth labels. We test the model on validation data sets and compare the blind test predictions with the ground truth. Our results indicate that our method is capable of automatically capturing subtle salt features from the 3D seismic image with less or no need for manual input. We further test the model on a field example to indicate the generalization of this deep CNN method across different data sets.

scholarly journals PUB-SalNet: A Pre-Trained Unsupervised Self-Aware Backpropagation Network for Biomedical Salient Segmentation

Algorithms ◽  
2020 ◽  
Vol 13 (5) ◽  
pp. 126 ◽  
Author(s):  
Feiyang Chen ◽  
Ying Jiang ◽  
Xiangrui Zeng ◽  
Jing Zhang ◽  
Xin Gao ◽  
...  
Keyword(s):  
Training Data ◽  
Data Sets ◽  
Local Similarity ◽  
Biomedical Data ◽  
Data Set ◽  
Biomedical Image ◽  
Feature Representations ◽  
3D Data ◽  
Supervised Methods ◽  
Data Driven Decisions

Salient segmentation is a critical step in biomedical image analysis, aiming to cut out regions that are most interesting to humans. Recently, supervised methods have achieved promising results in biomedical areas, but they depend on annotated training data sets, which requires labor and proficiency in related background knowledge. In contrast, unsupervised learning makes data-driven decisions by obtaining insights directly from the data themselves. In this paper, we propose a completely unsupervised self-aware network based on pre-training and attentional backpropagation for biomedical salient segmentation, named as PUB-SalNet. Firstly, we aggregate a new biomedical data set from several simulated Cellular Electron Cryo-Tomography (CECT) data sets featuring rich salient objects, different SNR settings, and various resolutions, which is called SalSeg-CECT. Based on the SalSeg-CECT data set, we then pre-train a model specially designed for biomedical tasks as a backbone module to initialize network parameters. Next, we present a U-SalNet network to learn to selectively attend to salient objects. It includes two types of attention modules to facilitate learning saliency through global contrast and local similarity. Lastly, we jointly refine the salient regions together with feature representations from U-SalNet, with the parameters updated by self-aware attentional backpropagation. We apply PUB-SalNet for analysis of 2D simulated and real images and achieve state-of-the-art performance on simulated biomedical data sets. Furthermore, our proposed PUB-SalNet can be easily extended to 3D images. The experimental results on the 2d and 3d data sets also demonstrate the generalization ability and robustness of our method.

Application of multi-sensor unmanned aerial system for identification of hydrothermal alteration zones

2020 ◽  
Author(s):  
Yosoon Choi ◽  
Jieun Baek ◽  
Jangwon Suh ◽  
Sung-Min Kim
Keyword(s):  
Machine Learning ◽  
Classification Accuracy ◽  
Training Data ◽  
Sensor Data ◽  
Machine Learning Techniques ◽  
Integrated Analysis ◽  
Unmanned Aerial System ◽  
Data Sets ◽  
Learning Techniques ◽  
Hydrothermal Alteration Zones

<p>In this study, we proposed a method to utilize a multi-sensor Unmanned Aerial System (UAS) for exploration of hydrothermal alteration zones. This study selected an area (10m × 20m) composed mainly of the andesite and located on the coast, with wide outcrops and well-developed structural and mineralization elements. Multi-sensor (visible, multispectral, thermal, magnetic) data were acquired in the study area using UAS, and were studied using machine learning techniques. For utilizing the machine learning techniques, we applied the stratified random method to sample 1000 training data in the hydrothermal zone and 1000 training data in the non-hydrothermal zone identified through the field survey. The 2000 training data sets created for supervised learning were first classified into 1500 for training and 500 for testing. Then, 1500 for training were classified into 1200 for training and 300 for validation. The training and validation data for machine learning were generated in five sets to enable cross-validation. Five types of machine learning techniques were applied to the training data sets: k-Nearest Neighbors (k-NN), Decision Tree (DT), Random Forest (RF), Support Vector Machine (SVM), and Deep Neural Network (DNN). As a result of integrated analysis of multi-sensor data using five types of machine learning techniques, RF and SVM techniques showed high classification accuracy of about 90%. Moreover, performing integrated analysis using multi-sensor data showed relatively higher classification accuracy in all five machine learning techniques than analyzing magnetic sensing data or single optical sensing data only.</p>

Saliency Optimization and Integration Via Iterative Bootstrap Learning

2018 ◽  
Vol 32 (09) ◽  
pp. 1859016
Author(s):  
Liming Li ◽  
Xiaodong Chai ◽  
Shuguang Zhao ◽  
Shubin Zheng ◽  
Shengchao Su
Keyword(s):  
Multiple Scales ◽  
Saliency Detection ◽  
Saliency Map ◽  
Input Image ◽  
Training Data ◽  
Data Sets ◽  
Saliency Maps ◽  
Training Samples ◽  
Public Data

This paper proposes an effective method to elevate the performance of saliency detection via iterative bootstrap learning, which consists of two tasks including saliency optimization and saliency integration. Specifically, first, multiscale segmentation and feature extraction are performed on the input image successively. Second, prior saliency maps are generated using existing saliency models, which are used to generate the initial saliency map. Third, prior maps are fed into the saliency regressor together, where training samples are collected from the prior maps at multiple scales and the random forest regressor is learned from such training data. An integration of the initial saliency map and the output of saliency regressor is deployed to generate the coarse saliency map. Finally, in order to improve the quality of saliency map further, both initial and coarse saliency maps are fed into the saliency regressor together, and then the output of the saliency regressor, the initial saliency map as well as the coarse saliency map are integrated into the final saliency map. Experimental results on three public data sets demonstrate that the proposed method consistently achieves the best performance and significant improvement can be obtained when applying our method to existing saliency models.

scholarly journals Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features

2015 ◽  
Vol 22 (3) ◽  
pp. 671-681 ◽  
Author(s):  
Azadeh Nikfarjam ◽  
Abeed Sarker ◽  
Karen O’Connor ◽  
Rachel Ginn ◽  
Graciela Gonzalez
Keyword(s):  
Machine Learning ◽  
Social Media ◽  
Language Processing ◽  
High Performance ◽  
Conditional Random Fields ◽  
Training Data ◽  
Data Sets ◽  
Social Media Mining ◽  
Medical Concepts ◽  
Media Mining

Abstract Objective Social media is becoming increasingly popular as a platform for sharing personal health-related information. This information can be utilized for public health monitoring tasks, particularly for pharmacovigilance, via the use of natural language processing (NLP) techniques. However, the language in social media is highly informal, and user-expressed medical concepts are often nontechnical, descriptive, and challenging to extract. There has been limited progress in addressing these challenges, and thus far, advanced machine learning-based NLP techniques have been underutilized. Our objective is to design a machine learning-based approach to extract mentions of adverse drug reactions (ADRs) from highly informal text in social media. Methods We introduce ADRMine, a machine learning-based concept extraction system that uses conditional random fields (CRFs). ADRMine utilizes a variety of features, including a novel feature for modeling words’ semantic similarities. The similarities are modeled by clustering words based on unsupervised, pretrained word representation vectors (embeddings) generated from unlabeled user posts in social media using a deep learning technique. Results ADRMine outperforms several strong baseline systems in the ADR extraction task by achieving an F-measure of 0.82. Feature analysis demonstrates that the proposed word cluster features significantly improve extraction performance. Conclusion It is possible to extract complex medical concepts, with relatively high performance, from informal, user-generated content. Our approach is particularly scalable, suitable for social media mining, as it relies on large volumes of unlabeled data, thus diminishing the need for large, annotated training data sets.

scholarly journals Predicting Fault Slip via Transfer Learning

2021 ◽  
Author(s):  
Kun Wang ◽  
Christopher Johnson ◽  
Kane Bennett ◽  
Paul Johnson
Keyword(s):  
Machine Learning ◽  
Numerical Simulations ◽  
Transfer Learning ◽  
Laboratory Experiments ◽  
Laboratory Data ◽  
Fault Slip ◽  
Geophysical Data ◽  
Training Data ◽  
Data Sets ◽  
Earthquake Cycle

Abstract Data-driven machine-learning for predicting instantaneous and future fault-slip in laboratory experiments has recently progressed markedly due to large training data sets. In Earth however, earthquake interevent times range from 10's-100's of years and geophysical data typically exist for only a portion of an earthquake cycle. Sparse data presents a serious challenge to training machine learning models. Here we describe a transfer learning approach using numerical simulations to train a convolutional encoder-decoder that predicts fault-slip behavior in laboratory experiments. The model learns a mapping between acoustic emission histories and fault-slip from numerical simulations, and generalizes to produce accurate results using laboratory data. Notably slip-predictions markedly improve using the simulation-data trained-model and training the latent space using a portion of a single laboratory earthquake-cycle. The transfer learning results elucidate the potential of using models trained on numerical simulations and fine-tuned with small geophysical data sets for potential applications to faults in Earth.

scholarly journals Extraction of Sea Ice Cover by Sentinel-1 SAR Based on SVM with Unsupervised Generation of Training Data

2020 ◽  
Author(s):  
Xiaoming Li ◽  
Yan Sun ◽  
Qiang Zhang
Keyword(s):  
Machine Learning ◽  
Sea Ice ◽  
Learning Algorithm ◽  
Texture Features ◽  
Open Water ◽  
Ice Cover ◽  
Training Data ◽  
Support Vector ◽  
Training Samples

In this paper, we focus on developing a novel method to extract sea ice cover (i.e., discrimination/classification of sea ice and open water) using Sentinel-1 (S1) cross-polarization (vertical-horizontal, VH or horizontal-vertical, HV) data in extra wide (EW) swath mode based on the machine learning algorithm support vector machine (SVM). The classification basis includes the S1 radar backscatter coefficients and texture features that are calculated from S1 data using the gray level co-occurrence matrix (GLCM). Different from previous methods where appropriate samples are manually selected to train the SVM to classify sea ice and open water, we proposed a method of unsupervised generation of the training samples based on two GLCM texture features, i.e. entropy and homogeneity, that have contrasting characteristics on sea ice and open water. We eliminate the most uncertainty of selecting training samples in machine learning and achieve automatic classification of sea ice and open water by using S1 EW data. The comparison shows good agreement between the SAR-derived sea ice cover using the proposed method and a visual inspection, of which the accuracy reaches approximately 90% - 95% based on a few cases. Besides this, compared with the analyzed sea ice cover data Ice Mapping System (IMS) based on 728 S1 EW images, the accuracy of extracted sea ice cover by using S1 data is more than 80%.

scholarly journals HistoFlow: Label-Efficient and Interactive Deep Learning Cell Analysis

2020 ◽  
Author(s):  
Tim Henning ◽  
Benjamin Bergner ◽  
Christoph Lippert
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
User Interface ◽  
Network Architecture ◽  
Training Data ◽  
Cell Segmentation ◽  
Annotation Tool ◽  
Cell Analysis ◽  
Instance Segmentation

Instance segmentation is a common task in quantitative cell analysis. While there are many approaches doing this using machine learning, typically, the training process requires a large amount of manually annotated data. We present HistoFlow, a software for annotation-efficient training of deep learning models for cell segmentation and analysis with an interactive user interface.It provides an assisted annotation tool to quickly draw and correct cell boundaries and use biomarkers as weak annotations. It also enables the user to create artificial training data to lower the labeling effort. We employ a universal U-Net neural network architecture that allows accurate instance segmentation and the classification of phenotypes in only a single pass of the network. Transfer learning is available through the user interface to adapt trained models to new tissue types.We demonstrate HistoFlow for fluorescence breast cancer images. The models trained using only artificial data perform comparably to those trained with time-consuming manual annotations. They outperform traditional cell segmentation algorithms and match state-of-the-art machine learning approaches. A user test shows that cells can be annotated six times faster than without the assistance of our annotation tool. Extending a segmentation model for classification of epithelial cells can be done using only 50 to 1500 annotations.Our results show that, unlike previous assumptions, it is possible to interactively train a deep learning model in a matter of minutes without many manual annotations.

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