Convolutional Neural Network-Based Automatic Segmentation of Substantia Nigra on Nigrosome and Neuromelanin Sensitive MR Images

2021 ◽  
Vol 25 (3) ◽  
pp. 156
Author(s):  
Junghwa Kang ◽  
Hyeonha Kim ◽  
Eunjin Kim ◽  
Eunbi Kim ◽  
Hyebin Lee ◽  
...  
Keyword(s):  
Neural Network ◽  
Substantia Nigra ◽  
Convolutional Neural Network ◽  
Automatic Segmentation ◽  
Mr Images

Carpal Bone Segmentation Using Fully Convolutional Neural Network

2019 ◽  
Vol 15 (10) ◽  
pp. 983-989
Author(s):  
Liang Kim Meng ◽  
Azira Khalil ◽  
Muhamad Hanif Ahmad Nizar ◽  
Maryam Kamarun Nisham ◽  
Belinda Pingguan-Murphy ◽  
...  
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Automatic Segmentation ◽  
Ground Truth ◽  
Bone Age ◽  
Image Feature ◽  
Qualitative Assessment ◽  
Carpal Bone ◽  
Radiographic Images ◽  
Accurate Quantitative Analysis

Background: Bone Age Assessment (BAA) refers to a clinical procedure that aims to identify a discrepancy between biological and chronological age of an individual by assessing the bone age growth. Currently, there are two main methods of executing BAA which are known as Greulich-Pyle and Tanner-Whitehouse techniques. Both techniques involve a manual and qualitative assessment of hand and wrist radiographs, resulting in intra and inter-operator variability accuracy and time-consuming. An automatic segmentation can be applied to the radiographs, providing the physician with more accurate delineation of the carpal bone and accurate quantitative analysis. Methods: In this study, we proposed an image feature extraction technique based on image segmentation with the fully convolutional neural network with eight stride pixel (FCN-8). A total of 290 radiographic images including both female and the male subject of age ranging from 0 to 18 were manually segmented and trained using FCN-8. Results and Conclusion: The results exhibit a high training accuracy value of 99.68% and a loss rate of 0.008619 for 50 epochs of training. The experiments compared 58 images against the gold standard ground truth images. The accuracy of our fully automated segmentation technique is 0.78 ± 0.06, 1.56 ±0.30 mm and 98.02% in terms of Dice Coefficient, Hausdorff Distance, and overall qualitative carpal recognition accuracy, respectively.

Convolutional Neural Network Based Frameworks for Fast Automatic Segmentation of Thalamic Nuclei from Native and Synthesized Contrast Structural MRI

2021 ◽  
Author(s):  
Lavanya Umapathy ◽  
Mahesh Bharath Keerthivasan ◽  
Natalie M. Zahr ◽  
Ali Bilgin ◽  
Manojkumar Saranathan
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Automatic Segmentation ◽  
Structural Mri ◽  
Thalamic Nuclei

Whole Tumor Segmentation from Brain MR images using Multi-view 2D Convolutional Neural Network

2021 ◽  
Author(s):  
Ritu Lahoti ◽  
Sunil Kumar Vengalil ◽  
Punith B Venkategowda ◽  
Neelam Sinha ◽  
Vinod Veera Reddy
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Tumor Segmentation ◽  
Mr Images ◽  
Brain Mr Images

scholarly journals Reduction of respiratory motion artifacts in gadoxetate-enhanced MR with a deep learning–based filter using convolutional neural network

2020 ◽  
Vol 30 (11) ◽  
pp. 5923-5932
Author(s):  
M.-L. Kromrey ◽  
D. Tamada ◽  
H. Johno ◽  
S. Funayama ◽  
N. Nagata ◽  
...  
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Motion Artifact ◽  
Motion Artifacts ◽  
Arterial Phase ◽  
Artifact Reduction ◽  
Gadoxetate Disodium ◽  
Mr Images ◽  
Liver Mri ◽  
Lesion Conspicuity

Abstract Objectives To reveal the utility of motion artifact reduction with convolutional neural network (MARC) in gadoxetate disodium–enhanced multi-arterial phase MRI of the liver. Methods This retrospective study included 192 patients (131 men, 68.7 ± 10.3 years) receiving gadoxetate disodium–enhanced liver MRI in 2017. Datasets were submitted to a newly developed filter (MARC), consisting of 7 convolutional layers, and trained on 14,190 cropped images generated from abdominal MR images. Motion artifact for training was simulated by adding periodic k-space domain noise to the images. Original and filtered images of pre-contrast and 6 arterial phases (7 image sets per patient resulting in 1344 sets in total) were evaluated regarding motion artifacts on a 4-point scale. Lesion conspicuity in original and filtered images was ranked by side-by-side comparison. Results Of the 1344 original image sets, motion artifact score was 2 in 597, 3 in 165, and 4 in 54 sets. MARC significantly improved image quality over all phases showing an average motion artifact score of 1.97 ± 0.72 compared to 2.53 ± 0.71 in original MR images (p < 0.001). MARC improved motion scores from 2 to 1 in 177/596 (29.65%), from 3 to 2 in 119/165 (72.12%), and from 4 to 3 in 34/54 sets (62.96%). Lesion conspicuity was significantly improved (p < 0.001) without removing anatomical details. Conclusions Motion artifacts and lesion conspicuity of gadoxetate disodium–enhanced arterial phase liver MRI were significantly improved by the MARC filter, especially in cases with substantial artifacts. This method can be of high clinical value in subjects with failing breath-hold in the scan. Key Points • This study presents a newly developed deep learning–based filter for artifact reduction using convolutional neural network (motion artifact reduction with convolutional neural network, MARC). • MARC significantly improved MR image quality after gadoxetate disodium administration by reducing motion artifacts, especially in cases with severely degraded images. • Postprocessing with MARC led to better lesion conspicuity without removing anatomical details.

scholarly journals Prediction of IDH and TERT promoter mutations in low-grade glioma from magnetic resonance images using a convolutional neural network

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Ryohei Fukuma ◽  
Takufumi Yanagisawa ◽  
Manabu Kinoshita ◽  
Takashi Shinozaki ◽  
Hideyuki Arita ◽  
...  
Keyword(s):  
Neural Network ◽  
Magnetic Resonance ◽  
Convolutional Neural Network ◽  
Texture Features ◽  
Wild Type ◽  
Mr Images ◽  
Patient Age ◽  
Tert Promoter ◽  
Patient Âgé ◽  
Grade Ii

AbstractIdentification of genotypes is crucial for treatment of glioma. Here, we developed a method to predict tumor genotypes using a pretrained convolutional neural network (CNN) from magnetic resonance (MR) images and compared the accuracy to that of a diagnosis based on conventional radiomic features and patient age. Multisite preoperative MR images of 164 patients with grade II/III glioma were grouped by IDH and TERT promoter (pTERT) mutations as follows: (1) IDH wild type, (2) IDH and pTERT co-mutations, (3) IDH mutant and pTERT wild type. We applied a CNN (AlexNet) to four types of MR sequence and obtained the CNN texture features to classify the groups with a linear support vector machine. The classification was also performed using conventional radiomic features and/or patient age. Using all features, we succeeded in classifying patients with an accuracy of 63.1%, which was significantly higher than the accuracy obtained from using either the radiomic features or patient age alone. In particular, prediction of the pTERT mutation was significantly improved by the CNN texture features. In conclusion, the pretrained CNN texture features capture the information of IDH and TERT genotypes in grade II/III gliomas better than the conventional radiomic features.

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