Regional and Local Genetic Variation in Japanese Stiltgrass (Microstegium vimineum)

2016 ◽  
Vol 9 (2) ◽  
pp. 96-111 ◽  
Author(s):  
Theresa M. Culley ◽  
Cynthia D. Huebner ◽  
Ari Novy
Keyword(s):  
Genetic Variation ◽  
Forest Edge ◽  
Microstegium Vimineum ◽  
Eastern United States ◽  
Long Distance ◽  
Japanese Stiltgrass ◽  
Genetic Diversity And Structure ◽  
Interior Forest ◽  
Light Gaps ◽  
Local Dispersal

Nonnative M. vimineum has been expanding rapidly in the eastern United States, where it can negatively affect plant communities. Locally, the species is assumed to spread from roadsides into nearby forests, where it can form dense populations after disturbances, especially in light gaps. Using microsatellite markers, we quantified patterns of genetic variation and structure among populations at nine sites in West Virginia. We then examined patterns of local dispersal within each population, focusing on subpopulations along the roadside, those coalescing nearby along the forest edge, and subpopulations in the interior forest. We found that levels of genetic variation of M. vimineum were relatively low overall across populations but with genetic structure present among populations (Fst = 0.60). Within populations, subpopulations along the roadside were genetically variable, containing 4 to 22 unique, multilocus genotypes. Many of these genotypes were also identified in the adjacent forest, consistent with local, diffusive spread from the roadway. However, several genotypes in the interior forest were unique to the population, indicating that dispersal from other sites may also occur. Overall, it appears that genetic diversity and structure in M. vimineum reflects a variety of processes, including localized dispersal and long-distance migration.

Diversity declines in Microstegium vimineum (Japanese stiltgrass) patches

2009 ◽  
Vol 142 (5) ◽  
pp. 1003-1010 ◽  
Author(s):  
Sheherezade N. Adams ◽  
Katharina A.M. Engelhardt
Keyword(s):  
Microstegium Vimineum ◽  
Japanese Stiltgrass

scholarly journals Genetic Variation and Possible Mechanisms Driving the Evolution of Worldwide Fig mosaic virus Isolates

2014 ◽  
Vol 104 (1) ◽  
pp. 108-114 ◽  
Author(s):  
Jeewan Jyot Walia ◽  
Anouk Willemsen ◽  
Eminur Elci ◽  
Kadriye Caglayan ◽  
Bryce W. Falk ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Mosaic Virus ◽  
Rna Virus ◽  
Plant Viruses ◽  
Long Distance ◽  
Evolutionary Mechanisms ◽  
Plant Materials ◽  
Genomic Rnas ◽  
Fig Trees ◽  
Fig Mosaic Virus

Fig mosaic virus (FMV) is a multipartite negative-sense RNA virus infecting fig trees worldwide. FMV is transmitted by vegetative propagation and grafting of plant materials, and by the eriophyid mite Aceria ficus. In this work, the genetic variation and evolutionary mechanisms shaping FMV populations were characterized. Nucleotide sequences from four genomic regions (each within the genomic RNAs 1, 2, 3, and 4) from FMV isolates from different countries were determined and analyzed. FMV genetic variation was low, as is seen for many other plant viruses. Phylogenetic analysis showed some geographically distant FMV isolates which clustered together, suggesting long-distance migration. The extent of migration was limited, although varied, between countries, such that FMV populations of different countries were genetically differentiated. Analysis using several recombination algorithms suggests that genomes of some FMV isolates originated by reassortment of genomic RNAs from different genetically similar isolates. Comparison between nonsynonymous and synonymous substitutions showed selection acting on some amino acids; however, most evolved neutrally. This and neutrality tests together with the limited gene flow suggest that genetic drift plays an important role in shaping FMV populations.

scholarly journals Spatial autocorrelation of genotypes under directional selection.

Genetics ◽  
1990 ◽  
Vol 124 (3) ◽  
pp. 757-771
Author(s):  
B K Epperson
Keyword(s):  
Genetic Variation ◽  
Pattern Analysis ◽  
Directional Selection ◽  
Morning Glory ◽  
Spatial Pattern Analysis ◽  
Spatial Distributions ◽  
Long Distance ◽  
Ipomoea Purpurea ◽  
Temporal Correlations ◽  
Limited Dispersal

Abstract The spatial distributions of genetic variation under selection-mutation equilibrium within populations that have limited dispersal are investigated. The results show that directional selection with moderate strength rapidly reduces the amount of genetic structure and spatial autocorrelations far below that predicted for selectively neutral loci. For the latter, homozygotes are spatially clustered into separate areas or patches, each consisting of several hundred homozygotes. When selection is added the patches of the deleterious homozygotes are much smaller, in the range of 25 to 50 individuals. Selection also reduces temporal correlations. Also investigated are the effects of random replacement processes, such as mutation, immigration, and long-distance migration, on spatial and temporal correlations. The detection of natural selection through spatial pattern analysis is discussed, and applied to data from populations of the morning glory, Ipomoea purpurea.

scholarly journals Conservation genetics of the threatened plant species Physaria filiformis (Missouri bladderpod) reveals strong genetic structure and a possible cryptic species

PLoS ONE ◽  
2021 ◽  
Vol 16 (3) ◽  
pp. e0247586
Author(s):  
Christine E. Edwards ◽  
Brooke C. Tessier ◽  
Joel F. Swift ◽  
Burgund Bassüner ◽  
Alexander G. Linan ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Structure ◽  
Plant Species ◽  
Genetic Drift ◽  
Rare Species ◽  
Ex Situ ◽  
Ouachita Mountains ◽  
Genetic Diversity And Structure ◽  
Genetic Clusters

Understanding genetic diversity and structure in a rare species is critical for prioritizing both in situ and ex situ conservation efforts. One such rare species is Physaria filiformis (Brassicaceae), a threatened, winter annual plant species. The species has a naturally fragmented distribution, occupying three different soil types spread across four disjunct geographical locations in Missouri and Arkansas. The goals of this study were to understand: (1) whether factors associated with fragmentation and small population size (i.e., inbreeding, genetic drift or genetic bottlenecks) have reduced levels of genetic diversity, (2) how genetic variation is structured and which factors have influenced genetic structure, and (3) how much extant genetic variation of P. filiformis is currently publicly protected and the implications for the development of conservation strategies to protect its genetic diversity. Using 16 microsatellite markers, we genotyped individuals from 20 populations of P. filiformis from across its geographical range and one population of Physaria gracilis for comparison and analyzed genetic diversity and structure. Populations of P. filiformis showed comparable levels of genetic diversity to its congener, except a single population in northwest Arkansas showed evidence of a genetic bottleneck and two populations in the Ouachita Mountains of Arkansas showed lower genetic variation, consistent with genetic drift. Populations showed isolation by distance, indicating that migration is geographically limited, and analyses of genetic structure grouped individuals into seven geographically structured genetic clusters, with geographic location/spatial separation showing a strong influence on genetic structure. At least one population is protected for all genetic clusters except one in north-central Arkansas, which should therefore be prioritized for protection. Populations in the Ouachita Mountains were genetically divergent from the rest of P. filiformis; future morphological analyses are needed to identify whether it merits recognition as a new, extremely rare species.

scholarly journals Structure and Migration in U.S. Blumeria graminis f. sp. tritici Populations

2016 ◽  
Vol 106 (3) ◽  
pp. 295-304 ◽  
Author(s):  
Christina Cowger ◽  
Ryan Parks ◽  
Evsey Kosman
Keyword(s):  
Ssr Markers ◽  
Large Scale ◽  
Isolation By Distance ◽  
Blumeria Graminis ◽  
Snp Markers ◽  
Eastern United States ◽  
Long Distance ◽  
Continental Scale ◽  
South Central ◽  
Haplotypic Diversity

While wheat powdery mildew occurs throughout the south-central and eastern United States, epidemics are especially damaging in the Mid-Atlantic states. The structure of the U.S. Blumeria graminis f. sp. tritici population was assessed based on a sample of 238 single-spored isolates. The isolates were collected from 16 locations in 12 states (18 site-years) as chasmothecial samples in 2003 or 2005, or as conidial samples in 2007 or 2010. DNA was evaluated using nine single nucleotide polymorphism (SNP) markers in four housekeeping genes, and 10 simple sequence repeat (SSR) markers. The SSR markers were variably polymorphic, with allele numbers ranging from 3 to 39 per locus. Genotypic diversity was high (210 haplotypes) and in eight of the site-years, every isolate had a different SSR genotype. SNP haplotypic diversity was lower; although 15 haplotypes were identified, the majority of isolates possessed one of two haplotypes. The chasmothecial samples showed no evidence of linkage disequilibrium (P = 0.36), while the conidial samples did (P = 0.001), but the two groups had nearly identical mean levels of genetic diversity, which was moderate. There was a weakly positive relationship between genetic distance and geographic distance (R2 = 0.25, P = 0.001), indicating modest isolation by distance. Most locations in the Mid-Atlantic and Great Lakes regions clustered together genetically, while Southeast locations formed a distinct but adjacent cluster; all of these were genetically separated from Southern Plains locations and an intermediate location in Kentucky. One-way migration was detected at a rate of approximately five individuals per generation from populations west of the Appalachian Mountains to those to the east, despite the fact that the Atlantic states experience more frequent and damaging wheat mildew epidemics. Overall, the evidence argues for a large-scale mosaic of overlapping populations that re-establish themselves from local sources, rather than continental-scale extinction and re-establishment, and a low rate of long-distance dispersal roughly from west to east, consistent with prevailing wind directions.

Environmental Factors Influence Early Population Growth of Japanese Stiltgrass (Microstegium vimineum)

2010 ◽  
Vol 3 (1) ◽  
pp. 17-25 ◽  
Author(s):  
Andrea N. Nord ◽  
David A. Mortensen ◽  
Emily S. J. Rauschert
Keyword(s):  
Habitat Suitability ◽  
Invasive Plant ◽  
Seedling Recruitment ◽  
Deciduous Forest ◽  
Plant Species Richness ◽  
Microstegium Vimineum ◽  
Small Scale ◽  
Japanese Stiltgrass ◽  
Site Characteristics ◽  
Physical Changes

AbstractHabitat suitability and disturbance can shape the early stages of biological invasions in important ways. Much that we know about habitat suitability and invasion originates from point-in-time studies, which characterize invasive plant abundance and associated site characteristics. In our study, we tested the influence of habitat suitability by creating small-scale invasions in a range of environments. Seeds of the invasive annual grass Japanese stiltgrass [Microstegium vimineum (Trin.) A. Camus] were planted into six environments in a deciduous forest in central Pennsylvania, and patch growth was monitored for 4 yr. Each of the 30 sites included a subplot subjected to litter disturbance at time of planting. This litter disturbance led to increased seedling recruitment only in the first 2 yr. Although patches were generally larger in wetland and roadside habitats, site influence was highly variable. Environmental variables (soil moisture, ammonium–N, pH, and plant species richness) measured in each plot were better predictors of population success than broad habitat categories. We conclude that risk assessment for species such as M. vimineum should focus not on habitat types but on areas likely to experience the physical changes that release M. vimineum populations.

scholarly journals Diversity Patterns of Bermuda Grass along Latitudinal Gradients at Different Temperatures in Southeastern China

Plants ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 1778
Author(s):  
Jing-Xue Zhang ◽  
Ming-Hui Chen ◽  
Lu Gan ◽  
Chuan-Jie Zhang ◽  
Yu Shen ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Low Temperatures ◽  
Bermuda Grass ◽  
Latitudinal Gradients ◽  
Comparative Genomic ◽  
Wind Pollination ◽  
High Latitudes ◽  
Genetic Diversity And Structure ◽  
Low Latitudes ◽  
Different Temperatures

Cynodon dactylon (L.) Pers. (common Bermuda grass) has a limited capacity to grow at low temperatures, which limits its geographical range. Exploring its evolutionary relationship across different environmental gradients is necessary to understand the effects of temperature change on the genetics of common Bermuda grass. In this study, high-throughput transcriptome sequencing was performed on 137 samples of C. dactylon from 16 latitudinal gradients to explore the differential molecular markers and analyze genetic diversity and structure along latitudinal gradients at different temperatures. We primarily sampled more high-quality single nucleotide polymorphisms (SNPs) from populations at lower and middle latitudes. Greater intraspecific genetic variation at each level of temperature treatment could be due to factors such as wind pollination and asexual breeding. Populations of C. dactylon at high latitudes differed from populations at middle and low latitudes, which was supported by a principal component analysis (PCA) and genetic structure analysis, performed at different temperatures. We observed more genetic variation for low-latitude populations at 5 °C, according to an analysis of three phylogenetic trees at different temperature levels, suggesting that low temperatures affected samples with low cold resistance. Based on the results of phylogenetic analysis, we found that samples from high latitudes evolved earlier than most samples at low latitudes. The results provide a comprehensive understanding of the evolutionary phenomenon of landscape genetics, laying the groundwork for future structural and comparative genomic studies of C. dactylon.

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