scholarly journals Walking Around Ribosomal Small Subunit: A Possible “Tourist Map” for an Electron Hole

2021 ◽  
Author(s):  
Andrey Yu. Sosorev
Keyword(s):  
Protein Synthesis ◽  
Small Subunit ◽  
The Body ◽  
Translation Process ◽  
Electron Hole ◽  
Rna Molecules ◽  
Charge Localization ◽  
Allosteric Mechanism ◽  
Electron Holes ◽  
Hole Localization

Despite several decades of research, the physics underlying translation – protein synthesis at the ribosome – remains poorly studied. For instance, the mechanism coordinating various events occurring in distant parts of the ribosome is unknown. Very recently, we have suggested that this allosteric mechanism could be based on the transport of electric charges (electron holes) along RNA molecules and localization of these charges in the functionally important areas; this assumption was justified using tRNA as an example. In this study, we turn to the ribosome and show computationally that holes can also efficiently migrate within the whole ribosomal small subunit (SSU). The potential sites of charge localization in SSU are revealed, and it is shown that most of them are located in the functionally important areas of the ribosome – intersubunit bridges, Fe4S4 cluster and the pivot linking the SSU head to the body. As a result, we suppose that hole localization within the SSU can affect intersubunit rotation (ratcheting) and SSU head swiveling, in agreement with the scenario of electronic coordination of ribosome operation. We anticipate that our findings will improve the understanding of the translation process and advance the molecular biology and medicine.

scholarly journals Walking around Ribosomal Small Subunit: A Possible “Tourist Map” for Electron Holes

Molecules ◽  
2021 ◽  
Vol 26 (18) ◽  
pp. 5479
Author(s):  
Andrey Yu. Sosorev
Keyword(s):  
Protein Synthesis ◽  
Molecular Biology ◽  
Small Subunit ◽  
Translation Process ◽  
Subunit A ◽  
Rna Molecules ◽  
Charge Localization ◽  
Allosteric Mechanism ◽  
Electron Holes ◽  
Hole Localization

Despite several decades of research, the physics underlying translation—protein synthesis at the ribosome—remains poorly studied. For instance, the mechanism coordinating various events occurring in distant parts of the ribosome is unknown. Very recently, we suggested that this allosteric mechanism could be based on the transport of electric charges (electron holes) along RNA molecules and localization of these charges in the functionally important areas; this assumption was justified using tRNA as an example. In this study, we turn to the ribosome and show computationally that holes can also efficiently migrate within the whole ribosomal small subunit (SSU). The potential sites of charge localization in SSU are revealed, and it is shown that most of them are located in the functionally important areas of the ribosome—intersubunit bridges, Fe4S4 cluster, and the pivot linking the SSU head to its body. As a result, we suppose that hole localization within the SSU can affect intersubunit rotation (ratcheting) and SSU head swiveling, in agreement with the scenario of electronic coordination of ribosome operation. We anticipate that our findings will improve the understanding of the translation process and advance molecular biology and medicine.

The history of anabolic steroids and a review of clinical experience with anabolic steroids

1985 ◽  
Vol 110 (3_Suppla) ◽  
pp. S11-S18 ◽  
Author(s):  
H. Kopera
Keyword(s):  
Protein Synthesis ◽  
Protein Metabolism ◽  
Anabolic Steroids ◽  
Muscular Activity ◽  
Living Cells ◽  
Cellular Protein ◽  
Complex Compounds ◽  
The Body ◽  
Anabolic Effect ◽  
Vital Functions

Metabolism is the term employed to embrace the various physical and chemical processes occurring within the tissues upon which the growth and heat production of the body depend and from which the energy for muscular activity, for the maintenance of vital activity and for the maintenance of vital functions is derived (Best & Taylor 1950). The destructive processes by which complex substances are converted by living cells into more simple compounds are called catabolism. Anabolism denotes the constructive processes by which simple substances are converted by living cells into more complex compounds, especially into living matter. Catabolism and anabolism are part of all metabolic processes, the carbohydrate, fat and protein metabolism. The term anabolic refers only to substances that exert an anabolic effect on protein metabolism and are unlikely to cause adverse androgenic effects. They shift the equilibrium between protein synthesis and degradation in the body as a whole in the direction of synthesis, either by promoting protein synthesis or reducing its breakdown. The protein anabolic effect of anabolic steroids is not restricted to single organs but is the result of stimulated biosynthesis of cellular protein in the whole organism.

scholarly journals Effects on protein synthesis of injecting synthetic polyribonucleotides into living cells

1974 ◽  
Vol 144 (1) ◽  
pp. 11-19 ◽  
Author(s):  
Hugh Woodland ◽  
Sarah E. Ayers
Keyword(s):  
Protein Synthesis ◽  
Xenopus Laevis ◽  
Potent Inhibitor ◽  
Living Cells ◽  
Initiation Factor ◽  
Rna Molecules ◽  
Endogenous Protein ◽  
Limited Supply ◽  
Inhibitor Of Protein Synthesis ◽  
Haemoglobin Synthesis

Micro-injection into the oocytes and eggs of Xenopus laevis was used to ascertain the effects of synthetic polyribonucleotides on protein synthesis in living cells. Poly(U) and poly(A) were not translated detectably, nor did they change the rate of endogenous protein synthesis. The same was true of poly(G,U), poly(A,G,U), poly(A,C,G,U), G-U-G-(U)n, A-(U)n and AUG. In contrast, A-U-G-(U)n was a potent inhibitor of protein synthesis in the cell. This might be because it is initiated normally but lacks a termination codon, or because it inhibits the translation of other molecules in some way not dependent on its normal initiation. Poly(G,U), poly(A,G,U) and poly(A,C,G,U) inhibited haemoglobin synthesis when they were injected into the oocyte with haemoglobin mRNA. The synthetic polyribonucleotides did not inhibit the translation of the natural mRNA when the two sorts of molecules were injected at different times. It is suggested that the synthetic RNA molecules compete with the natural mRNA for a pre-initiation factor in limited supply.

Intravenous administration of amino acids during anesthesia stimulates muscle protein synthesis and heat accumulation in the body

2006 ◽  
Vol 290 (5) ◽  
pp. E882-E888 ◽  
Author(s):  
Ippei Yamaoka ◽  
Masako Doi ◽  
Mitsuo Nakayama ◽  
Akane Ozeki ◽  
Shinji Mochizuki ◽  
...  
Keyword(s):  
Protein Synthesis ◽  
Protein Kinase ◽  
Intravenous Administration ◽  
Translation Initiation ◽  
Muscle Protein ◽  
Muscle Protein Synthesis ◽  
Mammalian Target Of Rapamycin ◽  
The Body ◽  
Initiation Factor ◽  
Heat Accumulation

The present study was conducted to determine the contribution of muscle protein synthesis to the prevention of anesthesia-induced hypothermia by intravenous administration of an amino acid (AA) mixture. We examined the changes of intraperitoneal temperature (Tcore) and the rates of protein synthesis ( Ks) and the phosphorylation states of translation initiation regulators and their upstream signaling components in skeletal muscle in conscious (Nor) or propofol-anesthetized (Ane) rats after a 3-h intravenous administration of a balanced AA mixture or saline (Sal). Compared with Sal administration, the AA mixture administration markedly attenuated the decrease in Tcore in rats during anesthesia, whereas Tcore in the Nor-AA group became slightly elevated during treatment. Stimulation of muscle protein synthesis resulting from AA administration was observed in each case, although Ks remained lower in the Ane-AA group than in the Nor-Sal group. AA administration during anesthesia significantly increased insulin concentrations to levels ∼6-fold greater than in the Nor-AA group and enhanced phosphorylation of eukaryotic initiation factor 4E-binding protein-1 (4E-BP1) and ribosomal protein S6 protein kinase relative to all other groups and treatments. The alterations in the Ane-AA group were accompanied by hyperphosphorylation of protein kinase B and the mammalian target of rapamycin (mTOR). These results suggest that administration of an AA mixture during anesthesia stimulates muscle protein synthesis via insulin-mTOR-dependent activation of translation initiation regulators caused by markedly elevated insulin and, thereby, facilitates thermal accumulation in the body.

scholarly journals Pulse-labeling Studies on Protein Synthesis in Developing Pea Seeds and Evidence of a Precursor Form of Legumin Small Subunit

1980 ◽  
Vol 66 (3) ◽  
pp. 510-515 ◽  
Author(s):  
Donald Spencer ◽  
Thomas J. V. Higgins ◽  
Susan C. Button ◽  
Ross A. Davey
Keyword(s):  
Protein Synthesis ◽  
Small Subunit ◽  
Pea Seeds

scholarly journals Chemoenzymatic Synthesis of Synthes as Precursors for Enantiopure Clenbuterol and Other β2 Agonists

Catalysts ◽  
2018 ◽  
Vol 8 (11) ◽  
pp. 516
Author(s):  
Fredrik Blindheim ◽  
Mari Hansen ◽  
Sigvart Evjen ◽  
Wei Zhu ◽  
Elisabeth Jacobsen
Keyword(s):  
Protein Synthesis ◽  
Nicotinamide Adenine Dinucleotide ◽  
Asymmetric Reduction ◽  
Enantiomeric Excess ◽  
Nicotinamide Adenine Dinucleotide Phosphate ◽  
The Body ◽  
Chemoenzymatic Synthesis ◽  
The World ◽  
Β2 Agonist ◽  
Β2 Agonists

Clenbuterol is a β2-agonist used in the veterinary treatment of asthma in several countries. The drug is listed on the World Antidoping Agency’s prohibited list due to its effect on increased protein synthesis in the body. However, racemic clenbuterol has recently been shown to reduce the risk of Parkinson’s disease. In order to reveal which one (or both) of the enantiomers that cause this effect, pure enantiomers need to be separately studied. (R)-1-(4-Amino-3,5-dichlorophenyl)-2-bromoethan-1-ol has been synthesised in 93% enantiomeric excess (ee) by asymmetric reduction of the corresponding ketone catalysed by a ketoreductase and nicotinamide adenine dinucleotide phosphate (NADPH) as the cofactor in dimethyl sulfoxide (DMSO). (S)-N-(2,6-Dichloro-4-(1-hydroxyethyl)phenyl)acetamide has been synthesised in >98% ee by the same system. Both synthons are potential precursors for clenbuterol enantiomers.

scholarly journals Poly(A) tail shortening is the translation-dependent step in c-myc mRNA degradation.

1990 ◽  
Vol 10 (12) ◽  
pp. 6132-6140 ◽  
Author(s):  
I A Laird-Offringa ◽  
C L de Wit ◽  
P Elfferich ◽  
A J van der Eb
Keyword(s):  
Protein Synthesis ◽  
Actinomycin D ◽  
Degradation Pathway ◽  
Mrna Degradation ◽  
The Body ◽  
Second Step ◽  
Protein Synthesis Inhibitors ◽  
Rapid Degradation ◽  
Translation Block ◽  
Insight Into

The highly unstable c-myc mRNA has been shown to be stabilized in cells treated with protein synthesis inhibitors. We have studied this phenomenon in an effort to gain more insight into the degradation pathway of this mRNA. Our results indicate that the stabilization of c-myc mRNA in the absence of translation can be fully explained by the inhibition of translation-dependent poly(A) tail shortening. This view is based on the following observations. First, the normally rapid shortening of the c-myc poly(A) tail was slowed down by a translation block. Second, c-myc messengers which carry a short poly(A) tail, as a result of prolonged actinomycin D or 3'-deoxyadenosine treatment, were not stabilized by the inhibition of translation. We propose that c-myc mRNA degradation proceeds in at least two steps. The first step is the shortening of long poly(A) tails. This step requires ongoing translation and thus is responsible for the delay in mRNA degradation observed in the presence of protein synthesis inhibitors. The second step involves rapid degradation of the body of the mRNA, possibly preceded by the removal of the short remainder of the poly(A) tail. This last step is independent of translation.

Crude protein levels in diets of lactating goats: nitrogen balance, urea excretion and microbial protein synthesis

2016 ◽  
Vol 154 (6) ◽  
pp. 1102-1109 ◽  
Author(s):  
E. DE JESUS DOS SANTOS ◽  
M. L. ALBUQUERQUE PEREIRA ◽  
M. PEREIRA DE FIGUEIREDO ◽  
H. G. DE OLIVEIRA SILVA ◽  
J. FERREIRA DA CRUZ ◽  
...  
Keyword(s):  
Protein Synthesis ◽  
Crude Protein ◽  
Production Efficiency ◽  
The Body ◽  
N Balance ◽  
Microbial Protein ◽  
Urea Excretion ◽  
Microbial Protein Synthesis ◽  
Lactating Goats ◽  
Rate Of Increase

SUMMARYThe experiment, conducted at Bahia, Brazil, from May to August 2010, aimed to evaluate the nitrogen (N) balance, urea excretion and microbial protein synthesis in lactating goats fed pelleted concentrates with the addition of crude protein (CP), obtained by replacing alfalfa hay with soybean meal. The diets consisted of different levels of CP and 200 g of roughage (Tifton 85 hay)/kg. Maize and mesquite bran were used as the energy source, with maize replaced by mesquite bran in the ratio of 1·7:1. Eight female Saanen goats were used, confined in individual pens and allocated to a 4 × 4 Latin square design. The N balance in the body was positive, and loss of body weight (–0·03 g/day) was observed for the diet with 190 g CP/kg. The concentration (mg/dl) of urea in urine, milk and blood plasma was positively influenced in a linear form, and the highest rate of increase was found in urine, with 2 mg/dl for every 10 g CP/kg added to the diet. The microbial protein synthesis was not affected, but the diets reduced the microbial protein (44 g/day) and its ruminal production efficiency (30 g/kg total digestible nutrients). The levels above 190 g of CP are not recommended because of the energy expenditure required to excrete the urea.

Phloem long-distance transport of CmNACP mRNA: implications for supracellular regulation in plants

Development ◽  
1999 ◽  
Vol 126 (20) ◽  
pp. 4405-4419 ◽  
Author(s):  
R. Ruiz-Medrano ◽  
B. Xoconostle-Cazares ◽  
W.J. Lucas
Keyword(s):  
Higher Plants ◽  
Phloem Transport ◽  
The Body ◽  
Pcr Analysis ◽  
Rt Pcr ◽  
Long Distance ◽  
Rna Molecules ◽  
Long Distance Transport ◽  
Meristem Development

Direct support for the concept that RNA molecules circulate throughout the plant, via the phloem, is provided through the characterisation of mRNA from phloem sap of mature pumpkin (Cucurbita maxima) leaves and stems. One of these mRNAs, CmNACP, is a member of the NAC domain gene family, some of whose members have been shown to be involved in apical meristem development. In situ RT-PCR analysis revealed the presence of CmNACP RNA in the companion cell-sieve element complex of leaf, stem and root phloem. Longitudinal and transverse sections showed continuity of transcript distribution between meristems and sieve elements of the protophloem, suggesting CmNACP mRNA transport over long distances and accumulation in vegetative, root and floral meristems. In situ hybridization studies conducted on CmNACP confirmed the results obtained using in situ RT-PCR. Phloem transport of CmNACP mRNA was proved directly by heterograft studies between pumpkin and cucumber plants, in which CmNACP transcripts were shown to accumulate in cucumber scion phloem and apical tissues. Similar experiments were conducted with 7 additional phloem-related transcripts. Collectively, these studies established the existence of a system for the delivery of specific mRNA transcripts from the body of the plant to the shoot apex. These findings provide insight into the presence of a novel mechanism likely used by higher plants to integrate developmental and physiological processes on a whole-plant basis.

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