Defining microbiome communities in banana (Musa spp.) with and without symptoms of Fusarium wilt
Abstract Background: Plant harbours microbial communities in rhizosphere and inside the roots. These plants associated microbial communities play pivotal roles in plant growth and productivity. However, in banana, the microbiome assembly, composition and abundance in different plant organs is not well understood and restricted only to bacterial communities in rhizosphere. Results: We assessed the diversity, structure and assemblage of bacterial and fungal communities associated with banana plants with and without Fusarium oxysporum f. sp. cubense (Foc) symptoms. A total of 117,814 bacterial and 17,317 fungal operational taxonomy units (OTUs) were identified in the rhizosphere, roots and corm of the host plant. Results revealed that bacterial and fungal microbiota present in roots and corm primarily emanated from the rhizosphere. The composition of bacterial communities in the rhizosphere, roots and corm were different, with more diversity observed in the rhizosphere and less in the corm. However, distinct sample types i.e. without (asymptomatic) and with (symptomatic) Fusarium symptoms were the major drivers of the fungal community composition. Considering the high relative abundance among samples, we identified core microbiomes with bacterial and fungal OTUs classified into 20 families and colonizing distinct plant components of banana. Our core microbiome assigned 129 bacterial and 37 fungal genera to known taxa. Conclusions: Banana plants harbor a rich and diverse bacterial and fungal communities in the rhizosphere, roots and corm. By comparing communities in other crops, we state that several of the communities discovered in banana could serve as key nodes for plant growth and health.