scholarly journals The spatial patterns of taxonomic and phylogenetic diversity of seed plants with the climate factors across Ethiopia and Eritrea

2019 ◽  
Author(s):  
Biyansa H. Boru ◽  
Shengwei Wang ◽  
Anne C. Ochola ◽  
Antony W. Njogu ◽  
Haiping Xin ◽  
...  
Keyword(s):  
Plant Diversity ◽  
Phylogenetic Diversity ◽  
Climatic Factors ◽  
Well Being ◽  
Taxonomic Diversity ◽  
Life Forms ◽  
Mean Annual Temperature ◽  
Geographical Regions ◽  
Clustering Patterns ◽  
Evolutionary Perspectives

Abstract Back ground Biodiversity is the basic units and measures of the health of ecosystems that provide diverse goods and services for the well-being of human societies and other life forms. However, in this era due to the threats from climatic change and other human-driven environmental changes the earth’s biodiversity is in a grave danger in the world wide. Here, we explored and mapped how the patterns of plant taxonomic diversity, phylogenetic diversity and structures vary across the geographical regions and with respect to climatic factors in Ethiopia and Eritrea in the horn of Africa by using different analyzing methods and diversity measuring indices for the same reasons. Results Our analysis showed varied spatial distribution patterns of plant diversity across the region and with the gradients of climatic factors. While the central and southern highland parts of Ethiopia were found to be the primary centres of taxonomic diversity, the centres with higher evolutionary diversity were found scattered in the region. The phylogenetic community structures also vary greatly. About 70% of the plant communities in the region showed phylogenetically clustering patterns. Significant and different relationships were observed between the climatic variables and plant diversity and phylogenetic structures. Generally mean annual temperature and precipitation were respectively found to negatively and positively impact the patterns of plant diversity in the region while variable patterns were observed among different plat life forms. The phylogenetic structure patterns of woody and herbaceous plant groups in terms of NRI were found to be differently impacted by climatic factors. Conclusions The patterns of plant diversity both from taxonomic and evolutionary perspectives vary greatly across the geographic and with climatic gradients in Ethiopia and Eritrea. Phylogenetic clustering patterns dominate the plant community assembly in the region though considerable areas were found with communities of phylogenetically overdispersing patterns. The patterns observed from evolutionary perspectives can provide more crucial information for conservation plans. It provide insights that enable the areas with high evolutionary diversity and phylogenetically overdispersing community assemblages to gain as much conservation attention as that of areas with high taxonomic diversity, given their species richness.

scholarly journals The spatial patterns of taxonomic and phylogenetic diversity of seed plants with the climate factors across Ethiopia and Eritrea

2019 ◽  
Author(s):  
Biyansa H. Boru ◽  
Shengwei Wang ◽  
Antony W. Njogu ◽  
Anne C. Ochola ◽  
Haiping Xin ◽  
...  
Keyword(s):  
Plant Diversity ◽  
Phylogenetic Diversity ◽  
Well Being ◽  
Taxonomic Diversity ◽  
Mean Annual Precipitation ◽  
Mean Annual Temperature ◽  
Herbaceous Plant ◽  
Geographical Regions ◽  
Clustering Patterns ◽  
Evolutionary Perspectives

Abstract Back ground: Biodiversity is the basic units and measures of the health of ecosystems that provide diverse goods and services for the well-being of human societies and other life forms. However, in this era due to the threats from climatic change and other human-driven environmental changes the earth’s biodiversity is in a grave danger in the world wide. Here, we explored and mapped how the patterns of plant taxonomic diversity, phylogenetic diversity and structures vary across the geographical regions and with respect to environmental factors in Ethiopia and Eritrea in the horn of Africa by using different analyzing methods and diversity measuring indices for the same reasons.Results: Our analysis showed varied spatial distribution patterns of plant diversity across the region and with the gradients of climatic factors. While the central and southern highland parts of Ethiopia were found to be the primary centers of taxonomic diversity, the centers with higher phylogenetic diversity were found scattered in the region. The phylogenetic structures also vary greatly. About 70% of the floristic compositions in the region showed phylogenetically clustering patterns. Significant and different relationships were observed between the climatic variables and plant diversity and phylogenetic structures. Generally mean annual temperature were found to negatively and mean annual precipitation and elevational range have a positively impact the patterns of plant diversity in the region while variable patterns were observed among different plant growth forms. The phylogenetic structure patterns of woody and herbaceous plant groups in terms of NTI were found to be differently impacted by environmental factors.Conclusions: The patterns of plant diversity both from taxonomic and evolutionary perspectives vary greatly across the geographic and with climatic gradients in Ethiopia and Eritrea. Phylogenetic clustering patterns dominate the floristic compositions assembly in the region though considerable areas were found with floristics of phylogenetically overdispersing patterns. The patterns observed from evolutionary perspectives can provide more crucial information for conservation plans. It provide insights that enable the areas with high phylogenetic diversity and phylogenetically overdispersing assemblages to gain as much conservation attention as that of areas with high taxonomic diversity, given their species richness.

scholarly journals Effects of management outweigh effects of plant diversity on restored animal communities in tallgrass prairies

2021 ◽  
Vol 118 (5) ◽  
pp. e2015421118
Author(s):  
Peter W. Guiden ◽  
Nicholas A. Barber ◽  
Ryan Blackburn ◽  
Anna Farrell ◽  
Jessica Fliginger ◽  
...  
Keyword(s):  
Plant Diversity ◽  
Tallgrass Prairie ◽  
Phylogenetic Diversity ◽  
Restoration Ecology ◽  
Taxonomic Diversity ◽  
Negative Effects ◽  
Tallgrass Prairies ◽  
Degraded Ecosystems ◽  
Functional And Phylogenetic Diversity ◽  
Animal Communities

A primary goal of ecological restoration is to increase biodiversity in degraded ecosystems. However, the success of restoration ecology is often assessed by measuring the response of a single functional group or trophic level to restoration, without considering how restoration affects multitrophic interactions that shape biodiversity. An ecosystem-wide approach to restoration is therefore necessary to understand whether animal responses to restoration, such as changes in biodiversity, are facilitated by changes in plant communities (plant-driven effects) or disturbance and succession resulting from restoration activities (management-driven effects). Furthermore, most restoration ecology studies focus on how restoration alters taxonomic diversity, while less attention is paid to the response of functional and phylogenetic diversity in restored ecosystems. Here, we compared the strength of plant-driven and management-driven effects of restoration on four animal communities (ground beetles, dung beetles, snakes, and small mammals) in a chronosequence of restored tallgrass prairie, where sites varied in management history (prescribed fire and bison reintroduction). Our analyses indicate that management-driven effects on animal communities were six-times stronger than effects mediated through changes in plant biodiversity. Additionally, we demonstrate that restoration can simultaneously have positive and negative effects on biodiversity through different pathways, which may help reconcile variation in restoration outcomes. Furthermore, animal taxonomic and phylogenetic diversity responded differently to restoration, suggesting that restoration plans might benefit from considering multiple dimensions of animal biodiversity. We conclude that metrics of plant diversity alone may not be adequate to assess the success of restoration in reassembling functional ecosystems.

Continuous forest has greater taxonomic, functional and phylogenetic plant diversity than an adjacent naturally fragmented forest

2014 ◽  
Vol 30 (4) ◽  
pp. 323-333 ◽  
Author(s):  
Miguel A. Munguía-Rosas ◽  
Selmy G. Jurado-Dzib ◽  
Candy R. Mezeta-Cob ◽  
Salvador Montiel ◽  
Armando Rojas ◽  
...  
Keyword(s):  
Tropical Forest ◽  
Forest Fragmentation ◽  
Plant Diversity ◽  
Phylogenetic Diversity ◽  
Taxonomic Diversity ◽  
Evergreen Forest ◽  
Forest Fragments ◽  
Fragmented Forest ◽  
Continuous Forest ◽  
Functional And Phylogenetic Diversity

Abstract:Several studies have evaluated the short-term effects of tropical forest fragmentation on plant taxonomic diversity, while only a few have evaluated its effects on functional or phylogenetic diversity. To our knowledge no study has looked at the long-term consequences of tropical forest fragmentation on the three main components of plant diversity simultaneously: taxonomic, functional and phylogenetic diversity. We sampled the vascular flora using belt transects (50 × 4 m) in a continuous tropical semi-evergreen forest (16 transects) and in an adjacent naturally fragmented forest (fragments of 1.7-My-old semi-evergreen forest immersed in a mangrove/sedge matrix) (18 transects), and compared their taxonomic, functional and phylogenetic plant diversity. There were 36 species in the continuous forest and 28 in the fragmented forest. Continuous forest was taxonomically more diverse (25%) than the fragmented forest. All functional diversity metrics were greater (6–33%) in the continuous than in the fragmented forest. Phylogenetic diversity was 19% greater and phylogenetically more overdispersed in the continuous forest than in the fragmented forest. The results suggest that in the fragmented forest not only is taxonomic plant diversity lower, but functional and phylogenetic diversity are as well. The negative effects of forest fragmentation on plant diversity seem to be chronic.

scholarly journals Elevational Patterns of Plant Richness in the Taibai Mountain, China

2014 ◽  
Vol 2014 ◽  
pp. 1-13 ◽  
Author(s):  
Lili Tang ◽  
Tanbao Li ◽  
Dengwu Li ◽  
Xiaxia Meng
Keyword(s):  
Species Richness ◽  
Plant Species ◽  
Plant Diversity ◽  
Climatic Factors ◽  
Plant Species Richness ◽  
Mean Annual Precipitation ◽  
Published Data ◽  
Seed Plants ◽  
Mean Annual Temperature ◽  
Taibai Mountain

The elevational distribution of plant diversity is a popular issue in ecology and biogeography, and several studies have examined the determinants behind plant diversity patterns. In this study, using published data of the local flora of Taibai Mountain, we explored the effects of spatial and climatic factors on plant species richness. We also evaluated Rapoport’s elevational rule by examining the relationship between elevational range size and midpoint. Species richness patterns were regressed against area, middle domain effect (MDE), mean annual temperature (MAT), and mean annual precipitation (MAP). The results showed that richness of overall plants, seed plants, bryophytes, and ferns all showed hump-shaped patterns along the elevational gradient, although the absolute elevation of richness peaks differed in different plant groups. Species richness of each plant group was all associated strongly with MAT and MAP. In addition to climatic factors, overall plants and seed plants were more related to area in linear regression models, while MDE was a powerful explanatory variable for bryophytes. Rapoport’s elevational rule on species richness was not supported. Our study suggests that a combined interaction of spatial and climatic factors influences the elevational patterns of plant species richness on Taibai Mountain, China.

scholarly journals Climate and plant community diversity in space and time

2020 ◽  
Vol 117 (9) ◽  
pp. 4464-4470 ◽  
Author(s):  
Susan Harrison ◽  
Marko J. Spasojevic ◽  
Daijiang Li
Keyword(s):  
Plant Community ◽  
Plant Diversity ◽  
Phylogenetic Diversity ◽  
Spatial Scales ◽  
Community Diversity ◽  
Niche Conservatism ◽  
Space And Time ◽  
Drying Trend ◽  
Functional And Phylogenetic Diversity ◽  
Over Time

Climate strongly shapes plant diversity over large spatial scales, with relatively warm and wet (benign, productive) regions supporting greater numbers of species. Unresolved aspects of this relationship include what causes it, whether it permeates to community diversity at smaller spatial scales, whether it is accompanied by patterns in functional and phylogenetic diversity as some hypotheses predict, and whether it is paralleled by climate-driven changes in diversity over time. Here, studies of Californian plants are reviewed and new analyses are conducted to synthesize climate–diversity relationships in space and time. Across spatial scales and organizational levels, plant diversity is maximized in more productive (wetter) climates, and these consistent spatial relationships are mirrored in losses of taxonomic, functional, and phylogenetic diversity over time during a recent climatic drying trend. These results support the tolerance and climatic niche conservatism hypotheses for climate–diversity relationships, and suggest there is some predictability to future changes in diversity in water-limited climates.

scholarly journals Plant diversity in sedimentary DNA obtained from high-latitude (Siberia) and high-elevation lakes (China)

2020 ◽  
Vol 8 ◽  
Author(s):  
Kathleen Stoof-Leichsenring ◽  
Sisi Liu ◽  
Weihan Jia ◽  
Kai Li ◽  
Luidmila Pestryakova ◽  
...  
Keyword(s):  
Lake Sediments ◽  
Plant Diversity ◽  
Environmental Conditions ◽  
Environmental Changes ◽  
The Arctic ◽  
Mean Annual Precipitation ◽  
Reference Database ◽  
Mean Annual Temperature ◽  
Diversity Assessment ◽  
Recent Climate

Plant diversity in the Arctic and at high altitudes strongly depends on and rebounds to climatic and environmental variability and is nowadays tremendously impacted by recent climate warming. Therefore, past changes in plant diversity in the high Arctic and high-altitude regions are used to infer climatic and environmental changes through time and allow future predictions. Sedimentary DNA (sedDNA) is an established proxy for the detection of local plant diversity in lake sediments, but still relationships between environmental conditions and preservation of the plant sedDNA proxy are far from being fully understood. Studying modern relationships between environmental conditions and plant sedDNA will improve our understanding under which conditions sedDNA is well-preserved helping to a.) evaluate suitable localities for sedDNA approaches, b.) provide analogues for preservation conditions and c.) conduct reconstruction of plant diversity and climate change. This study investigates modern plant diversity applying a plant-specific metabarcoding approach on sedimentary DNA of surface sediment samples from 262 lake localities covering a large geographical, climatic and ecological gradient. Latitude ranges between 25°N and 73°N and longitude between 81°E and 161°E, including lowland lakes and elevated lakes up to 5168 m a.s.l. Further, our sampling localities cover a climatic gradient ranging in mean annual temperature between -15°C and +18°C and in mean annual precipitation between 36­ and 935 mm. The localities in Siberia span over a large vegetational gradient including tundra, open woodland and boreal forest. Lake localities in China include alpine meadow, shrub, forest and steppe and also cultivated areas. The assessment of plant diversity in the underlying dataset was conducted by a specific plant metabarcoding approach. We provide a large dataset of genetic plant diversity retrieved from surface sedimentary DNA from lakes in Siberia and China spanning over a large environmental gradient. Our dataset encompasses sedDNA sequence data of 259 surface lake sediments and three soil samples originating from Siberian and Chinese lakes. We used the established chloroplastidal P6 loop trnL marker for plant diversity assessment. The merged, filtered and assigned dataset includes 15,692,944 read counts resulting in 623 unique plant DNA sequence types which have a 100% match to either the EMBL or to the specific Arctic plant reference database. The underlying dataset includes a taxonomic list of identified plants and results from PCR replicates, as well as extraction blanks (BLANKs) and PCR negative controls (NTCs), which were run along with the investigated lake samples. This collection of plant metabarcoding data from modern lake sediments is still ongoing and additional data will be released in the future.

scholarly journals Diat.barcode: a DNA tool to decipher diatom communities for the evaluation environmental pressures

2021 ◽  
Vol 4 ◽  
Author(s):  
Frederic Rimet ◽  
Teofana Chonova ◽  
Gilles Gassiole ◽  
Maria Kahlert ◽  
François Keck ◽  
...  
Keyword(s):  
Taxonomic Diversity ◽  
R Package ◽  
Life Forms ◽  
Reference Database ◽  
Sequencing Data ◽  
Culture Collections ◽  
Environmental Pressures ◽  
Ecological Features ◽  
Dna Metabarcoding ◽  
Environmental Sequences

Diatoms (Bacillariophyta) are ubiquitous microalgae, which present a huge taxonomic diversity, changing in correlation with differing environmental conditions. This makes them excellent ecological indicators for various ecosystems and ecological problematics (ecotoxicology, biomonitoring, paleo-environmental reconstruction …). Current standardized methodologies for diatoms are based on microscopic determinations, which is time consuming and prone to identification uncertainties. DNA metabarcoding has been proposed as a way to avoid these flaws, enabling the sequencing of a large quantity of barcodes from natural samples. A taxonomic identity is given to these barcodes by comparing their sequences to a barcoding reference library. However, to identify environmental sequences correctly, the reference database should contain a representative number of reference sequences to ensure a good coverage of diatom diversity. Moreover, the reference database needs to be carefully taxonomically curated by experts, as its content has an obvious impact on species detection. Diat.barcode is an open-access library for diatoms linking diatom taxonomic identities to rbcL barcode sequences (a chloroplast marker suitable for species-level identification of diatoms), which has been maintained since 2012. Data are accumulated from three sources: (1) the NCBI nucleotide database, (2) unpublished sequencing data of culture collections and more recently (3) environmental sequences. Since 2017, an international network of experts in diatom taxonomy curate this library. The last version of the database (version 9.2), includes 8066 entries that correspond to more than 280 different genera and 1490 different species. In addition to the taxonomic information, morphological features (e.g. biovolumes, chloroplasts, etc.), life-forms (mobility, colony-type) and ecological features (taxa preferences to pollution) are given. The database can be downloaded from the website (www6.inrae.fr/carrtel-collection/Barcoding-database/) or directly through the R package diatbarcode. Ready-to-use files for commonly used metabarcoding pipelines (Mothur and DADA2) are also available.

scholarly journals Experimentation of grapevine cultivation in organic system, on five different Romanian vineyards

2016 ◽  
Vol 73 (2) ◽  
pp. 175
Author(s):  
Aurora Maria Ranca ◽  
Victoria Artem ◽  
Ionica Dina ◽  
Liliana Parcalabu ◽  
Maria Iliescu ◽  
...  
Keyword(s):  
Cynodon Dactylon ◽  
Climatic Factors ◽  
Growing Season ◽  
Lobesia Botrana ◽  
Amaranthus Retroflexus ◽  
Mean Annual Temperature ◽  
Stellaria Media ◽  
Annual Average ◽  
Organic System ◽  
Polygonum Aviculare

In five Romanian vineyards, in 2013-2014 period was experimented organic system growing on  grape varieties for wine representative for each area, here are applied organic growing technology in parallel with the conventional (control). White varieties studied are: Chardonnay (Murfatlar and Valea Calugareasca), Sauvignon blanc and Muscat Ottonel(Tarnave), Feteasca regala (Tarnave, Bujoru and Copou-Iasi). Red varieties are Cabernet Sauvignon (Murfatlar and Valea Calugareasca) and Merlot (Bujoru).Concerning evolution of main climatic factors for the years 2013-2014 it is show that the annual average air temperature increase compared with the average of the years 1991-2010; is observed an increasing in mean annual temperature, mean temperature during the growing season and the value of sum of sunshine hours. The water regime was kept constant, registering values close to the annual average, both during the growing season and at entire year. The weeds spectrum is represented both by dicotyledonous as knotweed (Polygonum aviculare), Veronica (Stellaria media), news (Amaranthus retroflexus), bindweed (Convolvurus arvensis) and monocotyledonous as grass thick (Cynodon dactylon).Concerning the phytosanitary status, at Murfatlar were registered problems with oidium attack, with all main disease at Dealu Mare and with downy mildew at Bujoru. In all areas the pest has been found are: grape mouth (Lobesia botrana) and spiders (Tetranichus sp.). Schemes of treatments focused generally on substances bassed on copper and sulfur to combat diseases and for pests have been used pheromonal traps or other certified organic products.The grapes harvest was lower in organic plots with till 25%; their quality being close at both growing variants.

Effects of geographical and climatic factors on cystic echinococcosis in south-western Iran

2020 ◽  
Vol 94 ◽  
Author(s):  
A. Jamshidi ◽  
A. Haniloo ◽  
A. Fazaeli ◽  
M.A. Ghatee
Keyword(s):  
Land Cover ◽  
Cystic Echinococcosis ◽  
Geographical Information Systems ◽  
Climatic Factors ◽  
Weather Conditions ◽  
Climatic Conditions ◽  
Geographical Information ◽  
Annual Rainfall ◽  
Mean Annual Temperature ◽  
Western Iran

Abstract Cystic echinococcosis (CE) is caused by the larval form of Echinococcus granulosus that can cause serious health and economic problems in the endemic foci. CE is globally distributed in various climatic conditions from circumpolar to tropical latitudes. Iran is an important endemic area with a spectrum of weather conditions. The aim of this study was to determine the effects of geo-climatic factors on the distribution of livestock CE in south-western Iran (SWI) in 2016 to 2018. Data of livestock CE were retrieved from veterinary organizations of four provinces of SWI. The geo-climatic factors, including mean annual temperature (MAT), minimum MAT (MinMAT), maximum MAT (MaxMAT), mean annual rainfall (MAR), elevation, mean annual evaporation (MAE), sunny hours, wind speed, mean annual humidity (MAH), slope, frost days and land cover, were analysed using geographical information systems (GIS) approaches. The statistical analysis showed that MAR, frost days, elevation, slope and semi-condensed forest land cover were positively and MAE, MAT, MaxMAT, MinMAT and salt and salinity land cover were negatively correlated with CE occurrence. MAE was shown to be a predictive factor in the stepwise linear logistic regression model. In short, the current GIS-based study found that areas with lower evaporation were the main CE risk zones, though those with lower temperature and higher rainfall, altitude and slope, especially where covered with or in close proximity of semi-condensed forest, should be prioritized for consideration by health professionals and veterinarians for conducting control programmes in SWI.

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