Microbiability of meat quality and carcass composition traits in swine

Abstract BackgroundSwine gut microbiome constitutes a portion of the whole genome and has potential to affect different phenotypes. More recently, research is more directed towards association of gut microbiome and different traits in swine. However, the contribution of microbial composition to the phenotypic variation of meat quality and carcass composition traits in pigs has not been explored yet. The objectives of this study are to estimate the microbiabilities for different meat quality and carcass composition traits; to investigate the impact of intestinal microbiome on heritability estimates; to estimate the correlation between microbial diversity and meat quality and carcass composition traits; and to estimate the microbial correlation between the meat quality and carcass composition traits in a commercial swine population.ResultsThe contribution of the microbiome to carcass composition and meat quality traits was prominent although it varied over time, increasing from weaning to off test for most traits. Microbiability estimates of carcass composition traits were greater than that of meat quality traits. Among all of the traits analyzed, belly weight had higher microbiability estimate (0.29 ± 0.04). Adding microbiome information did not affect the estimates of genomic heritability of meat quality traits but affected the estimates of carcass composition traits. Fat depth had greater decrease (10%) in genomic heritability. High microbial correlations were found among several traits. This suggested that genomic correlation was partially contributed by genetic similarity of microbiome composition.ConclusionsResults indicate that better understanding of microbial composition could aid the improvement of complex traits, particularly the carcass composition traits in swine by inclusion of microbiome information in the genetic evaluation process.

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Microbiability of meat quality and carcass composition traits in swine

10.1101/833731 ◽

2019 ◽

Cited By ~ 3

Author(s):

Piush Khanal ◽

Christian Maltecca ◽

Clint Schwab ◽

Justin Fix ◽

Francesco Tiezzi

Keyword(s):

Meat Quality ◽

Fixed Effects ◽

Carcass Composition ◽

Quality Traits ◽

Microbiome Composition ◽

Meat Quality Traits ◽

Genomic Heritability ◽

Genomic Correlation ◽

Weight Decrease ◽

The Impact

AbstractThe impact of gut microbiome composition was investigated at different stages of production (Wean, Mid-test, and Off-test) on meat quality and carcass composition traits of 1,123 three-way-crossbred pigs. Data were analyzed using linear mixed models which included the fixed effects of dam line, contemporary group and gender as well as the random effects of pen, animal and microbiome information at different stages. The contribution of the microbiome to all traits was prominent although it varied over time, increasing from weaning to Off-test for most traits. Microbiability estimates of carcass composition traits were greater compared to meat quality traits. Adding microbiome information did not affect the estimates of genomic heritability of meat quality traits but affected the estimates of carcass composition traits. High microbial correlations were found among different traits, particularly with traits related to fat deposition with decrease in genomic correlation up to 20% for loin weight and belly weight. Decrease in genomic heritabilities and genomic correlations with the inclusion of microbiome information suggested that genomic correlation was partially contributed by genetic similarity of microbiome composition.

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214 Correlation among host gut microbiome and their relationship with meat quality and carcass composition traits of swine

Journal of Animal Science ◽

10.1093/jas/skz258.087 ◽

2019 ◽

Vol 97 (Supplement_3) ◽

pp. 44-44

Author(s):

Piush Khanal ◽

Christian Maltecca ◽

Clint Schwab ◽

Justin Fix ◽

Francesco Tiezzi

Keyword(s):

Meat Quality ◽

Gut Microbiome ◽

Fixed Effects ◽

Average Daily Gain ◽

Carcass Traits ◽

Alpha Diversity ◽

Carcass Composition ◽

Additive Genetic Effect ◽

Quality Traits ◽

Meat Quality Traits

Abstract Study on correlation among host gut microbiome and their relationship with meat quality and carcass composition traits remains limited. The objectives of this study were 1) to estimate the microbial correlation between meat quality and carcass traits; and 2) to estimate the genetic correlation between microbial alpha diversity, and meat quality and carcass traits in commercial swine population. Data were collected from Duroc sired three-way cross individuals (n = 1,123) genotyped with 60K SNP chips. Fecal 16S microbial sequences for all individuals were obtained at three different stages: weaning (WEAN: 18.64 ± 1.09 days); week 15 (W_15: 118.2 ± 1.18 days); and off test (OT: 196.4 ± 7.80 days). Alpha diversity was measured at each stage [WEAN (alpha_w), W_15 (alpha_15) and OT (alpha_off)] using the Shannon index, which was computed as: ∑ ni=1piln(pi) where pi was the proportional abundance of ith operational taxonomic unit. Microbial correlations were estimated using multi-trait model, which included fixed effects of dam line, contemporary group and sex, as well as random effects of pen, additive genetic and microbiome. Bivariate analyses were conducted between different traits and alpha_w, alpha_15 and alpha_off with the same fixed effects and random pen and additive genetic effect. Analyses were conducted in ASREML v.4. Microbial correlations ranged from -0.93 ± 0.11 between firmness and slice shear force to 0.97 ± 0.02 between carcass average daily gain (CADG) and loin weight. For meat quality traits, correlations were weak, except for alpha_15 with Minolta a* (-0.45±0.19). Alpha_15 showed weak correlations except with CADG (-0.43±0.19). All correlations between alpha_ot and growth, carcass and meat quality traits were weak. These results may establish a newer approach of genetic evaluation process by utilizing gut microbiome information.

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Meat quality traits and muscle composition of cows differing in lactation performance

Archives Animal Breeding ◽

10.5194/aab-55-36-2012 ◽

2012 ◽

Vol 55 (1) ◽

pp. 36-47 ◽

Cited By ~ 3

Author(s):

M. Hamada ◽

E. Albrecht ◽

A.-R. El Bagory ◽

A.-B. Edris ◽

H. M. Hammon ◽

...

Keyword(s):

Body Composition ◽

Cell Size ◽

Muscle Fibre ◽

Meat Quality ◽

Quality Traits ◽

Lactation Performance ◽

Fat Cell ◽

Muscle Structure ◽

Meat Quality Traits ◽

The Impact

Abstract. Beef and dairy cows differ in the way in which they utilise nutrients and in accretion or mobilisation of body reserves during lactation. Thus far, little is known about the impact of lactation performance on body composition, meat quality, and the related muscle structure of cows with a defined, combined beef and dairy genetic background. In the described experiment, 50 F2 cows, originating from mating Charolais bulls to German Holstein cows and a following intercross of F1 individuals, were slaughtered during the second lactation, 30 days after calving. Cows were assigned to 3 groups, each containing representatives of 3 families, according to lactation performance. Standard carcass and meat quality traits were determined. Additionally, samples from longissimus muscle were investigated by histology and computer image analysis for muscle fibre profile, intramuscular fat cell size, and marbling traits. Subcutaneous fat cell size was measured to estimate the impact of lactation on body fat reserves. The results suggest no influence of the duration of the first lactation on body composition, meat quality or muscle structure. However, the amount of milk per day influenced body weight, body composition, and marbling traits. Relationships between traits were low, but showed consistently that increasing milk yield was negatively correlated with tissue accretion. Changes of muscle fibre and fat cell profile, indicating protein or fat mobilisation by lactation, could not be detected. In the presented study, lactation had only minor consequences for meat quality.

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