scholarly journals Different molecular markers to identify the fertility of sugar beet monogerm germplasm resources

2021 ◽  
Author(s):  
Haoqi Shi ◽  
Zhi Pi ◽  
Zedong Wu
Keyword(s):  
Molecular Markers ◽  
Nucleotide Sequence ◽  
Sugar Beet ◽  
Marker Assisted Selection ◽  
Enzyme Digestion ◽  
Germplasm Resources ◽  
Single Nucleotide

Abstract Experiments were conducted to validate different molecular markers associated with sugar beet breeding using available sugar beet monogerm germplasm resources to explore their effectiveness in different sugar beet populations. We used multiple primer pairs to amplify sugar beet monogerm sterile and maintainer lines in order to verify their polymorphism. For the nucleus Rf1 locus genotype enzyme digestion was also required to verify. The results showed that three pairs of primers, TR1, s17 and 11E8M4S, produced polymorphism when amplifying sugar beet sterile and maintainer lines; primers o7 and AB-18, although polymorphic, did not correlate significantly with sugar beet fertility; primer cpSSR-2 did not produce significant band differences when amplifying sterile and maintainer lines, however, the number of single nucleotide sequence repeats of base A needed to be further verified as a basis for differentiating sugar beet fertility. The polymorphism of 15 pairs of primers related to sugar beet fertility identification was verified and TR1, s17 and 11E8M4S could be used to differentiate sugar beet sterile lines from the maintainer lines and used for subsequent Marker-Assisted Selection (MAS).

The development of codominant PCR/RFLP based markers for the flax rust-resistance alleles at the L locus

Genome ◽  
1999 ◽  
Vol 42 (1) ◽  
pp. 1-8 ◽  
Author(s):  
G Hausner ◽  
K Y Rashid ◽  
E O Kenaschuk ◽  
J D Procunier
Keyword(s):  
Molecular Markers ◽  
Nucleotide Sequence ◽  
Marker Assisted Selection ◽  
Rust Resistance ◽  
Single Gene ◽  
Pcr Markers ◽  
Genetic Studies ◽  
New Genes ◽  
Pcr Rflp ◽  
Primer Sets

The flax L locus exists as a single gene with at least 13 alleles with different rust-resistance specificities. With regards to resistance to North American races of flax rust the L2, L6, and L11 alleles are of major importance. Molecular markers have been developed by screening primer sets, whose sequences were based on the nucleotide sequence of L6, for their ability to amplify segments of the L gene. One primer combination was found to amplify only the L6 or L11 alleles and another primer set was found to amplify the 3' end of all important L alleles. The latter primer set yielded a 1.3 kb fragment which upon digestion with the endonuclease MboI generated RFLP patterns unique to L2, L6, L9, and L11. The application of PCR markers to a set of 22 cultivars, comprised of deregistered, recent, and yet to be released cultivars verifies genetic studies done by previous workers and demonstrates the usefulness of the markers for following segregation of L alleles in crosses amongst wide or narrow selections of cultivars. Overall, the results confirmed that L6 is present in many Canadian flax cultivars. However, in several recently-released flax cultivars that have rust resistance conditioned by genes at other loci, the L9 allele was detected. These molecular markers will be useful in marker-assisted selection and the introduction of new genes for rust resistance in the flax breeding programs.Key words: flax rust, PCR/RFLP marker, marker-assisted selection.

scholarly journals Development of Molecular Markers for Predicting Radish (Raphanus sativus) Flesh Color Based on Polymorphisms in the RsTT8 Gene

Plants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1386
Author(s):  
Soyun Kim ◽  
Keunho Yun ◽  
Han Yong Park ◽  
Ju Young Ahn ◽  
Ju Yeon Yang ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Raphanus Sativus ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Cosmetic Industry ◽  
Natural Colorants ◽  
Health Promoting ◽  
Primer Sets ◽  
Red Radish ◽  
Simple Sequence

Red radish (Raphanus sativus L.) cultivars are a rich source of health-promoting anthocyanins and are considered a potential source of natural colorants used in the cosmetic industry. However, the development of red radish cultivars via conventional breeding is very difficult, given the unusual inheritance of the anthocyanin accumulation trait in radishes. Therefore, molecular markers linked with radish color are needed to facilitate radish breeding. Here, we characterized the RsTT8 gene isolated from four radish genotypes with different skin and flesh colors. Sequence analysis of RsTT8 revealed a large number of polymorphisms, including insertion/deletions (InDels), single nucleotide polymorphisms (SNPs), and simple sequence repeats (SSRs), between the red-fleshed and white-fleshed radish cultivars. To develop molecular markers on the basis of these polymorphisms for discriminating between radish genotypes with different colored flesh tissues, we designed four primer sets specific to the RsTT8 promoter, InDel, SSR, and WD40/acidic domain (WD/AD), and tested these primers on a diverse collection of radish lines. Except for the SSR-specific primer set, all primer sets successfully discriminated between red-fleshed and white-fleshed radish lines. Thus, we developed three molecular markers that can be efficiently used for breeding red-fleshed radish cultivars.

Application of marker-assisted selection and genome-wide association scanning to the development of winter food barley germplasm resources

2013 ◽  
Vol 132 (6) ◽  
pp. 563-570 ◽  
Author(s):  
Yada Chutimanitsakun ◽  
Alfonso Cuesta-Marcos ◽  
Shiaoman Chao ◽  
Ann Corey ◽  
Tanya Filichkin ◽  
...  
Keyword(s):  
Marker Assisted Selection ◽  
Genome Wide Association ◽  
Germplasm Resources ◽  
Genome Wide ◽  
Winter Food ◽  
Barley Germplasm

scholarly journals Nucleotide sequence and transcription of the sugar beet mitochondrial F0F1-ATPase subunit 9 gene

1989 ◽  
Vol 17 (21) ◽  
pp. 8857-8857 ◽  
Author(s):  
Yongbiae Xue ◽  
Colwyn M. Thomas ◽  
D.Roy Davies
Keyword(s):  
Nucleotide Sequence ◽  
Sugar Beet ◽  
Atpase Subunit ◽  
Subunit 9

scholarly journals Single Nucleotide Polymorphisms and Indel Markers from the Transcriptome of Garlic

2016 ◽  
Vol 141 (1) ◽  
pp. 62-65 ◽  
Author(s):  
Michael J. Havey ◽  
Yul-Kyun Ahn
Keyword(s):  
Genetic Diversity ◽  
Molecular Markers ◽  
Single Nucleotide Polymorphisms ◽  
Nucleotide Polymorphisms ◽  
Phenotypic Characteristics ◽  
Single Nucleotide ◽  
Germplasm Collections ◽  
Indel Markers ◽  
Production Environments ◽  
Culinary Uses

Garlic (Allium sativum) is cultivated worldwide and appreciated for its culinary uses. In spite of primarily being asexually propagated, garlic shows great morphological variation and adaptability to diverse production environments. Molecular markers and phenotypic characteristics have been used to assess the genetic diversity among garlics. In this study, we undertook transcriptome sequencing from a single garlic plant to identify molecular markers in expressed regions of the garlic genome. Garlic sequences were assembled and selected if they were similar to monomorphic sequences from a doubled haploid (DH) of onion (Allium cepa). Single nucleotide polymorphisms (SNPs) and insertion–deletion (indel) events were identified in 4355 independent garlic assemblies. A sample of the indels was verified using the original complementary DNA (cDNA) library and genomics DNAs from diverse garlics, and segregations confirmed by sexual progenies of garlic. These molecular markers from the garlic transcriptome should be useful for estimates of genetic diversity, identification and removal of duplicate accessions from germplasm collections, and the development of a detailed genetic map of this important vegetable crop.

Molecular Markers

2021 ◽  
pp. 16-52
Keyword(s):  
Molecular Markers ◽  
Nucleotide Sequence ◽  
Genetic Analysis ◽  
Plant Breeding ◽  
Genome Analysis ◽  
Morphological Difference ◽  
Basic Principles ◽  
Versatile Tool ◽  
New Varieties ◽  
Rate Of Success

Conventionally, establishment of relationship between the genotype and phenotype through genetic analysis was considered as key to success in plant breeding. The discovery of molecular markers has changed the entire scenario of genome analysis. Coinheritance of a gene of interest and a marker suggests that they are physically close on the chromosome. A marker must be polymorphic in nature for their identification and utilization. Such polymorphism can be detected at three levels: phenotype (morphological), difference in biomolecules (biochemical), or differences in the nucleotide sequence of DNA (molecular). These markers act as a versatile tool and find their importance in taxonomy, plant breeding, gene mapping, cultivar identification, and forensic science. They have several advantages over the conventional methods of plant breeding for developing new varieties with higher rate of success. This chapter covers the basic principles and applications of various types of markers with special emphasis on molecular markers.

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