scholarly journals Differentially expressed genes and phenotypic variation in florets among the isogenic Ogura-CMS, DGMS and inbred lines of broccoli

2020 ◽  
Author(s):  
Zhansheng Li ◽  
Yumei Liu ◽  
Zhiyuan Fang ◽  
Limei Yang ◽  
Mu Zhuang ◽  
...  
Keyword(s):  
Seed Germination ◽  
Male Sterility ◽  
Seed Yield ◽  
Inbred Line ◽  
Abc Transporters ◽  
Plant Hormone ◽  
Inbred Lines ◽  
Maintainer Line ◽  
Late Flowering ◽  
Cms Line

Abstract Background: Male sterility contributes strongly to hybrid seed purity and production in Brassica crops. To detect plant phenotypes and the gene expression patterns involved in bioprocess of an Ogura cytoplasmic male sterility line (Ogura-CMS), a dominant genic male sterility line (DGMS) and their maintainer line, we analyzed the transcriptomes of broccoli florets among the isogenic Ogura-CMS (T54C), DGMS (T54M) and inbred lines (T54S).Results: There were respectively 505, 585 and 469 upregulated genes, and 1109, 1073 and 543 downregulated genes in the comparison groups of T54C and T54M, T54C and T54S, and T54M and T54S. The head weight and head width showed stronger performance in the Ogura-CMS than the DGMS line or maintainer line. The Ogura-CMS line showed poorer performance in seed yield and seed germination than the DGMS line or maintainer line. The DGMS line had longer maturation and flowering periods than the Ogura-CMS and maintainer lines. The plant hormone genes, auxin (TIR1, GH3 and SAUR) and salicylic acid (SA) (NPR1), and adenosine triphosphate-binding cassette (ABC) transporters-related genes (ABCB1 and ATM) were highly up-regulated in T54C compared with T54M or T54S. The brassinosteroid upregulated gene CYCD3 related to the function of late-flowering and delaying senescence in plants, was detected in T54M over two seasons.Conclusions: Among the isogenic Ogura-CMS, DGMS and inbred lines of broccoli, the Ogura-CMS line showed strong performance in head yield than the DGMS line or the inbred line. The DGMS line had longer days to flowering than the Ogura-CMS and inbred lines. However, the inbred line presented a higher seed yield and seed germination rate than the DGMS or Ogura-CMS line. This study found that some potential plant hormone genes, auxin (TIR1, GH3 and SAUR) and SA (NPR1), and ABC transporters related genes (ABCB1 and ATM) might play a key role in regulation of the developmental trait in the Ogura-CMS line. The BR- upregulated gene CYCD3 may function in late-flowering and delaying senescence of broccoli consistent with the investigations conducted over two seasons. Our findings provided a possible explanation for physiological and developmental differences of broccoli among the Ogura-CMS, the DGMS and the inbred lines.

scholarly journals Organelle genome composition and candidate gene identification for Nsa cytoplasmic male sterility in Brassica napus

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Shi-Fei Sang ◽  
De-Sheng Mei ◽  
Jia Liu ◽  
Qamar U. Zaman ◽  
Hai-Yan Zhang ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Mitochondrial Genome ◽  
Cytoplasmic Male Sterility ◽  
Male Sterility ◽  
Parental Species ◽  
Sequencing Technology ◽  
Genome Composition ◽  
Maintainer Line ◽  
Organelle Genomes ◽  
Cms Line

Abstract Background Nsa cytoplasmic male sterility (CMS) is a novel alloplasmic male sterility system derived from somatic hybridization between Brassica napus and Sinapis arvensis. Identification of the CMS-associated gene is a prerequisite for a better understanding of the origin and molecular mechanism of this CMS. With the development of genome sequencing technology, organelle genomes of Nsa CMS line and its maintainer line were sequenced by pyro-sequencing technology, and comparative analysis of the organelle genomes was carried out to characterize the organelle genome composition of Nsa CMS as well as to identify the candidate Nsa CMS-associated genes. Results Nsa CMS mitochondrial genome showed a higher collinearity with that of S. arvensis than B. napus, indicating that Nsa CMS mitochondrial genome was mainly derived from S. arvensis. However, mitochondrial genome recombination of parental lines was clearly detected. In contrast, the chloroplast genome of Nsa CMS was highly collinear with its B. napus parent, without any evidence of recombination of the two parental chloroplast genomes or integration from S. arvensis. There were 16 open reading frames (ORFs) specifically existed in Nsa CMS mitochondrial genome, which could not be identified in the maintainer line. Among them, three ORFs (orf224, orf309, orf346) possessing chimeric and transmembrane structure are most likely to be the candidate CMS genes. Sequences of all three candidate CMS genes in Nsa CMS line were found to be 100% identical with those from S. arvensis mitochondrial genome. Phylogenetic and homologous analysis showed that all the mitochondrial genes were highly conserved during evolution. Conclusions Nsa CMS contains a recombined mitochondrial genome of its two parental species with the majority form S. arvensis. Three candidate Nsa CMS genes were identified and proven to be derived from S. arvensis other than recombination of its two parental species. Further functional study of the candidate genes will help to identify the gene responsible for the CMS and the underlying molecular mechanism.

scholarly journals Comparative Transcriptome Analysis of the Anthers from the Cytoplasmic Male-Sterile Pepper Line HZ1A and Its Maintainer Line HZ1B

Horticulturae ◽  
2021 ◽  
Vol 7 (12) ◽  
pp. 580
Author(s):  
Zhixing Nie ◽  
Jianying Chen ◽  
Yunpeng Song ◽  
Hongfei Fu ◽  
Hong Wang ◽  
...  
Keyword(s):  
Male Sterility ◽  
Molecular Mechanisms ◽  
Male Sterile ◽  
Maintainer Line ◽  
Breeding Programs ◽  
Kegg Pathways ◽  
Kegg Analysis ◽  
Cms Line ◽  
Phenylpropanoid Biosynthesis ◽  
Go Terms

Cytoplasmic male-sterility (CMS) is important for the utilization of crop heterosis and study of the molecular mechanisms involved in CMS could improve breeding programs. In the present study, anthers of the pepper CMS line HZ1A and its maintainer line HZ1B were collected from stages S1, S2, and S3 for transcriptome sequencing. A total of 47.95 million clean reads were obtained, and the reads were assembled into 31,603 unigenes. We obtained 42 (27 up-regulated and 15 down-regulated), 691 (346 up-regulated and 345 down-regulated), and 709 (281 up-regulated and 428 down-regulated) differentially expressed genes (DEGs) in stages S1, S2, and S3, respectively. Through Gene Ontology (GO) analysis, the DEGs were found to be composed of 46 functional groups. Two GO terms involved in photosynthesis, photosynthesis (GO:0015986) and photosystem I (GO:0009522), may be related to CMS. Through Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, oxidative phosphorylation (ko00190) and phenylpropanoid biosynthesis (ko00940) were significantly enriched in the S1 and S2 stages, respectively. Through the analysis of 104 lipid metabolism-related DEGs, four significantly enriched KEGG pathways may help to regulate male sterility during anther development. The mitochondrial genes orf470 and atp6 were identified as candidate genes of male sterility for the CMS line HZ1A. Overall, the results will provide insights into the molecular mechanisms of pepper CMS.

scholarly journals iTRAQ-Based Proteomic Analysis of Ogura-CMS Cabbage and Its Maintainer Line

2018 ◽  
Vol 19 (10) ◽  
pp. 3180 ◽  
Author(s):  
Fengqing Han ◽  
Xiaoli Zhang ◽  
Limei Yang ◽  
Mu Zhuang ◽  
Yangyong Zhang ◽  
...  
Keyword(s):  
Oxidative Phosphorylation ◽  
Male Sterility ◽  
Molecular Mechanisms ◽  
Transcriptome Profiling ◽  
Pcr Analysis ◽  
Hybrid Seed Production ◽  
Protein Species ◽  
Absolute Quantitation ◽  
Maintainer Line ◽  
Cms Line

Ogura cytoplasmic male sterility (CMS) contributes considerably to hybrid seed production in Brassica crops. To detect the key protein species and pathways involved in Ogura-CMS, we analysed the proteome of the cabbage Ogura-CMS line CMS01-20 and its corresponding maintainer line F01-20 using the isobaric tags for the relative and absolute quantitation (iTRAQ) approach. In total, 162 differential abundance protein species (DAPs) were identified between the two lines, of which 92 were down-accumulated and 70 were up-accumulated in CMS01-20. For energy metabolism in the mitochondrion, eight DAPs involved in oxidative phosphorylation were down-accumulated in CMS01-20, whereas in the tricarboxylic acid (TCA) cycle, five DAPs were up-accumulated, which may compensate for the decreased respiration capacity and may be associated with the elevated O2 consumption rate in Ogura-CMS plants. Other key protein species and pathways involved in pollen wall assembly and programmed cell death (PCD) were also identified as being male-sterility related. Transcriptome profiling revealed 3247 differentially expressed genes between the CMS line and the fertile line. In a conjoint analysis of the proteome and transcriptome data, 30 and 9 protein species/genes showed the same and opposite accumulation patterns, respectively. Nine noteworthy genes involved in sporopollenin synthesis, callose wall degeneration, and oxidative phosphorylation were presumably associated with the processes leading to male sterility, and their expression levels were validated by qRT-PCR analysis. This study will improve our understanding of the protein species involved in pollen development and the molecular mechanisms underlying Ogura-CMS.

scholarly journals Improvement ability of male parent by gibberellic acid application to enhancing the outcrossing of cytoplasmic male sterility rice lines

2021 ◽  
Vol 117 (3) ◽  
pp. 1
Author(s):  
Hassan HAMAD ◽  
Elsayed GEWAILY ◽  
Adel GHONEIM ◽  
Mohamed SHEHAB ◽  
Neama EL-KHOLLY
Keyword(s):  
Gibberellic Acid ◽  
Cytoplasmic Male Sterility ◽  
Male Sterility ◽  
Plant Height ◽  
Seed Yield ◽  
Male Parent ◽  
Rice Seed ◽  
Female Ratio ◽  
Cms Line ◽  
Male To Female

<p class="042abstractstekst">The study quantified the effect of gibberellic acid (GA<sub>3</sub>) as a pre-flowering treatment for male parent Giza 178 R and the influence of male to female ratio (2R:10A, 2R:12A, 2R:14A and 2R:16A) between male (R) to female (A) for two Cytoplasmic Male Sterility (CMS) lines (‘IR69625’ and ‘G46’) on hybrid rice seed production. The main plots were occupied by CMS lines while; GA3 application for male parent Giza 178R were arranged in the sub plots and male to female ratio was arranged in the sub-sub plots. The results indicated that, the, duration of floret opening, angle of floret opening, filaments exsertion, filaments length<strong>, </strong>anther length, plant height and number of tiller hill<sup>-1 </sup>of male parent Giza 178R were significantly at 300 g GA<sub>3</sub> ha<sup>-1</sup> concentration. Plant height, panicle exsertion, panicle length, flag leaf angle and 1000-grain mass of CMS were not significantly affected by the GA<sub>3</sub> application for male parent and male to female ratio, while, number of fertile panicles hill<sup>-1</sup>, panicle mass, seed set, seed yield and harvest index of CMS lines were highly significantly affected. The highest seed yield (2.880 and 2.950 t ha<sup>-1</sup>) was obtained by CMS line IR69625A using 300 g GA<sub>3</sub> ha<sup>-1</sup> of male parent Giza 178R with male to female ratio of 2R:14A during both seasons.</p>

scholarly journals Discovery of Four Novel ORFs Responsible for Cytoplasmic Male Sterility (CMS) in Cotton (Gossypium hirsutum L.) through Comparative Analysis of the Mitochondrial Genomes of Four Isoplasmic Lines

Agronomy ◽  
2020 ◽  
Vol 10 (6) ◽  
pp. 765
Author(s):  
Min Li ◽  
Li Chen ◽  
Danfeng Tang ◽  
Xiaofang Liao ◽  
Xiangjun Kong ◽  
...  
Keyword(s):  
Cytoplasmic Male Sterility ◽  
Male Sterility ◽  
Ribosomal Proteins ◽  
High Throughput Sequencing ◽  
Open Reading Frames ◽  
Maintainer Line ◽  
Protein Coding ◽  
Synonymous Mutations ◽  
Protein Coding Genes ◽  
Cms Line

Cytoplasmic male sterility (CMS) is an important feature for achieving heterosis in the development of hybrid crops. Mitochondria contribute to CMS, especially via mitochondrial DNA (mtDNA) rearrangements and chimeric genes. However, the mechanisms of CMS have not been fully elucidated, and the isonuclear alloplasmic lines used in previous studies have limited utility in cotton CMS research. In this study, three CMS lines (J4A-1, J4A-2 and J4A-3) and their isoplasmic maintainer line (J4B) were analyzed for mtDNA structural differences via high-throughput sequencing. The results showed that mtDNA was conserved (with similarities higher than 99%) among the three CMS lines and their isoplasmic maintainer line. All lines harbored 36 known protein-coding genes, 3 rRNAs, and 15 tRNAs. The protein-coding genes with non-synonymous mutations mainly encoded two types of proteins: ATPase and ribosomal proteins. Four new open reading frames (ORFs) (orf116b, orf186a-1, orf186a-2 and orf305a) were identified as candidate ORFs responsible for CMS. Two of the ORFs (orf186a-1 and orf186a-2) were identified as orf4 and orf4-2 of the upland cotton CMS line 2074A (a line with Gossypium harknessii Brandegee CMS-D2-2 cytoplasm), respectively. These findings provide a reference for CMS research in cotton or other crops.

scholarly journals MicroRNAs Involved in Regulatory Cytoplasmic Male Sterility by Analysis RNA-seq and Small RNA-seq in Soybean

2021 ◽  
Vol 12 ◽  
Author(s):  
Chunbao Zhang ◽  
Fuyou Fu ◽  
Chunjing Lin ◽  
Xiaoyang Ding ◽  
Jingyong Zhang ◽  
...  
Keyword(s):  
Cytoplasmic Male Sterility ◽  
Male Sterility ◽  
Regulatory Network ◽  
Target Genes ◽  
Reproductive Development ◽  
Differentially Expressed ◽  
Hybrid Breeding ◽  
Rna Seq ◽  
Maintainer Line ◽  
Cms Line

Cytoplasmic male sterility (CMS) is an important plant characteristic for exploiting heterosis to enhance crop traits during breeding. However, the CMS regulatory network remains unclear in plants, even though researchers have attempted to isolate genes associated with CMS. In this study, we performed high-throughput sequencing and degradome analyses to identify microRNAs (miRNAs) and their targets in a soybean CMS line (JLCMS9A) and its maintainer line (JLCMS9B). Additionally, the differentially expressed genes during reproductive development were identified using RNA-seq data. A total of 280 miRNAs matched soybean miRNA sequences in miRBase, including mature miRNAs and pre-miRNAs. Of the 280 miRNAs, 30, 23, and 21 belonged to the miR166, miR156, and miR171 families, respectively. Moreover, 410 novel low-abundant miRNAs were identified in the JLCMS9A and JLCMS9B flower buds. Furthermore, 303 and 462 target genes unique to JLCMS9A and JLCMS9B, respectively, as well as 782 common targets were predicted based on the degradome analysis. Target genes differentially expressed between the CMS line and the maintainer line were revealed by an RNA-seq analysis. Moreover, all target genes were annotated with diverse functions related to biological processes, cellular components, and molecular functions, including transcriptional regulation, the nucleus, meristem maintenance, meristem initiation, cell differentiation, auxin-activated signaling, plant ovule development, and anther development. Finally, a network was built based on the interactions. Analyses of the miRNA, degradome, and transcriptome datasets generated in this study provided a comprehensive overview of the reproductive development of a CMS soybean line. The data presented herein represent useful information for soybean hybrid breeding. Furthermore, the study results indicate that miRNAs might contribute to the soybean CMS regulatory network by modulating the expression of CMS-related genes. These findings lay the foundation for future studies on the molecular mechanisms underlying soybean CMS.

scholarly journals Improvement ability of male parent by gibberellic acid application to enhancing the outcrossing of cytoplasmic male sterility rice lines

2021 ◽  
Vol 117 (3) ◽  
pp. 1
Author(s):  
Hassan HAMAD ◽  
Elsayed GEWAILY ◽  
Adel GHONEIM ◽  
Mohamed SHEHAB ◽  
Neama EL-KHOLLY
Keyword(s):  
Gibberellic Acid ◽  
Cytoplasmic Male Sterility ◽  
Male Sterility ◽  
Plant Height ◽  
Seed Yield ◽  
Male Parent ◽  
Rice Seed ◽  
Female Ratio ◽  
Cms Line ◽  
Male To Female

<p class="042abstractstekst">The study quantified the effect of gibberellic acid (GA<sub>3</sub>) as a pre-flowering treatment for male parent Giza 178 R and the influence of male to female ratio (2R:10A, 2R:12A, 2R:14A and 2R:16A) between male (R) to female (A) for two Cytoplasmic Male Sterility (CMS) lines (‘IR69625’ and ‘G46’) on hybrid rice seed production. The main plots were occupied by CMS lines while; GA3 application for male parent Giza 178R were arranged in the sub plots and male to female ratio was arranged in the sub-sub plots. The results indicated that, the, duration of floret opening, angle of floret opening, filaments exsertion, filaments length<strong>, </strong>anther length, plant height and number of tiller hill<sup>-1 </sup>of male parent Giza 178R were significantly at 300 g GA<sub>3</sub> ha<sup>-1</sup> concentration. Plant height, panicle exsertion, panicle length, flag leaf angle and 1000-grain mass of CMS were not significantly affected by the GA<sub>3</sub> application for male parent and male to female ratio, while, number of fertile panicles hill<sup>-1</sup>, panicle mass, seed set, seed yield and harvest index of CMS lines were highly significantly affected. The highest seed yield (2.880 and 2.950 t ha<sup>-1</sup>) was obtained by CMS line IR69625A using 300 g GA<sub>3</sub> ha<sup>-1</sup> of male parent Giza 178R with male to female ratio of 2R:14A during both seasons.</p>

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