scholarly journals Transcriptome Analysis Combined With Glutathione S-transferase 1 Gene Family Whole-genome Identification Reveals the Mechanism Underlying the Exogenous Application of 5-aminolevulinic Acid to Alleviate Low Temperature Stress in Solanum Lycopersicum Seedling

2020 ◽  
Author(s):  
Zhengda Zhang ◽  
Tao Liu ◽  
Zhen Kang ◽  
Jiwen Xu ◽  
Shichun Yang ◽  
...  
Keyword(s):  
Low Temperature ◽  
Gene Family ◽  
Temperature Stress ◽  
Stress Resistance ◽  
Aminolevulinic Acid ◽  
Low Temperature Stress ◽  
Tomato Genome ◽  
Glutathione S Transferase ◽  
Cis Acting ◽  
Gst Activity

Abstract Background: Transcriptome sequencing was conducted to screen out genes that actively respond to exogenous 5-aminolevulinic acid (ALA) induction under low temperature stress. The study used two versions of the tomato genome database to strictly screen and identify tomato glutathione S-transferase (GST) gene families and carried out the related bioinformatics analysis of tomato GST gene family. The expression pattern of SlGST genes induced by exogenous application ALA under low temperature stress was also analysed. Related physiological indicators were determined, and related chemical stains were performed.Results: RNA sequencing (RNA-seq) results showed that the expression of SlGST gene was different under various treatments, and a large number of SlGST genes widely responded to ALA induction under low temperature stress. Sixty-nine full-length GST genes were identified by screening the two versions of tomato genome databases combined with protein domain analysis. Analysis of gene family phylogenetic tree divided the tomato GST gene family into eight subfamilies. Tandem replication of genes is one of the driving forces for the evolution of tomato GST gene family, and a large number of cis-acting elements are related to stress resistance on the promoter of the GST gene family. Exogenous ALA application under low temperature stress induces a broad response of tomato leaf SlGST gene (qRT-PCR verification), increases GST activity and decreases reactive oxygen species (ROS) accumulation.Conclusions: RNA sequencing results revealed that a large number of tomato GST genes are differentially expressed, and Sixty-nine GSTs are identified in the tomato genome. Tandem replication of genes is the driving force for 68 the evolution of tomato GST family, and the promoter contains a large number of cis-acting elements related to stress resistance. Test results show that exogenous ALA induces the expression of SlGST genes under low temperature stress, thereby increasing GST activity to eliminate the ROS produced under low temperature stress and increase the tomato tolerance.

scholarly journals Identification of proteins involved in response to cold stress and genome-wide identification and analysis of the APX gene family in winter rapeseed (Brassica rapa L.)

2021 ◽  
Author(s):  
Li Ma ◽  
Jing Bai ◽  
Jia Xu ◽  
Weiliang Qi ◽  
Haiyun Li ◽  
...  
Keyword(s):  
Low Temperature ◽  
Gene Family ◽  
Temperature Stress ◽  
Brassica Rapa ◽  
Cold Resistance ◽  
Resistance Mechanism ◽  
Northern China ◽  
Low Temperature Stress ◽  
Oilseed Crop ◽  
Cold Response

Abstract Winter Brassica rapa is an important oilseed crop in northern China, but the mechanism of its cold resistance remains unclear. APX plays important roles in response of this plant to abiotic stress and in scavenging free radicals. In this study, 59 DEPs were isolated and identified from winter B. rapa and B. napus using bidirectional electrophoresis, and APX was found to be differentially expressed in these two species. Therefore, the roles of APX proteins in the cold response and superoxide metabolism pathways in both rapeseed species were further investigated. And comprehensive analysis of phylogeny, chromosome distribution, motif identification, sequence structure, gene duplication, and RNA-seq expression profile in APX gene family. Most of the BrAPX genes were specifically expressed under low temperature stress and behaved significantly differently in cold-tolerant and cold-sensitive varieties. qPCR was also used to verify the differences in expression between these two varieties under cold, freezing, drought and heat stress, and these candidate genes and proteins may play important roles in the response of B. rapa to low temperature stress and provide new information for the elucidation of the cold resistance mechanism in B. rapa.

Exogenous application of 5-aminolevulinic acid improves low-temperature stress tolerance of maize seedlings

2018 ◽  
Vol 69 (6) ◽  
pp. 587 ◽  
Author(s):  
Yi Wang ◽  
Jing Li ◽  
Wanrong Gu ◽  
Qian Zhang ◽  
Lixin Tian ◽  
...  
Keyword(s):  
Enzyme Activity ◽  
Low Temperature ◽  
Antioxidant Enzyme ◽  
Temperature Stress ◽  
Aminolevulinic Acid ◽  
Photosynthetic Capacity ◽  
Antioxidant Enzyme Activity ◽  
Low Temperature Stress ◽  
Temperature Sensitive ◽  
Maize Seedlings

The important plant growth regulator 5-aminolevulinic acid (ALA) could promote low-temperature stress tolerance of many plants; however, the underlying mechanisms remain to be elucidated. We investigated the effects of exogenously applied ALA on seedling morphology, antioxidant enzyme activity and photosynthetic capacity of maize (Zea mays L.) seedlings under low-temperature stress. Two cultivars, low-temperature-sensitive cv. Suiyu 13 (SY13) and low-temperature-tolerant cv. Zhengdan 958 (ZD958), were subjected to four treatments: low-temperature without ALA treatment, low-temperature after ALA treatment, normal temperature without ALA treatment, and normal temperature after ALA treatment. Plant morphological growth, proline content, antioxidant enzyme activity and photosynthetic capacity were determined. ALA treatment significantly decreased the inhibitory effects of low-temperature stress on seedling dry weight and increased proline accumulation under low temperatures in ZD958. Pre-application of ALA significantly improved superoxide dismutase and catalase activities in SY13 under low-temperature stress. Furthermore, treating maize seedlings with ALA resulted in significant enhancement of ribulose-1,5-bisphosphate (RuBP) carboxylase activity under low-temperature stress in both cultivars. Pre-treatment with ALA relieved the damage caused by low-temperature stress to maize seedlings, particularly in the low-temperature-sensitive cultivar. Therefore, ALA at appropriate concentrations may be used to prevent reductions in maize crop yield due to low-temperature stress.

scholarly journals 5-Aminolevulinic Acid Improves Nutrient Uptake and Endogenous Hormone Accumulation, Enhancing Low-Temperature Stress Tolerance in Cucumbers

2018 ◽  
Vol 19 (11) ◽  
pp. 3379 ◽  
Author(s):  
Ali Anwar ◽  
Yan Yan ◽  
Yumei Liu ◽  
Yansu Li ◽  
Xianchang Yu
Keyword(s):  
Low Temperature ◽  
Temperature Stress ◽  
Root Length ◽  
Aminolevulinic Acid ◽  
Dry Mass ◽  
Low Temperature Stress ◽  
Night Temperature ◽  
Nutrient Contents ◽  
Chl A ◽  
Mass Accumulation

5-aminolevulinic acid (ALA) increases plant tolerance to low-temperature stress, but the physiological and biochemical mechanisms that underlie its effects are not fully understood. To investigate them, cucumber seedlings were treated with different ALA concentrations (0, 15, 30 and 45 mg/L ALA) and subjected to low temperatures (12/8 °C day/night temperature). The another group (RT; regular temperature) was exposed to normal temperature (28/18 °C day/night temperature). Low-temperature stress decreased plant height, root length, leaf area, dry mass accumulation and the strong seedling index (SSI), chlorophyll contents, photosynthesis, leaf and root nutrient contents, antioxidant enzymatic activities, and hormone accumulation. Exogenous ALA application significantly alleviated the inhibition of seedling growth and increased plant height, root length, hypocotyl diameter, leaf area, and dry mass accumulation under low-temperature stress. Moreover, ALA increased chlorophyll content (Chl a, Chl b, Chl a+b, and Carotenoids) and photosynthetic capacity, net photosynthetic rate (Pn), stomatal conductance (Gs), intercellular CO2 concentration (Ci), and transpiration rate (Tr), as well as the activities of superoxide dismutase (SOD), peroxidase (POD, catalase (CAT), ascorbate peroxidase (APX), and glutathione reductase (GR) enzymes, while decreasing hydrogen peroxide (H2O2), superoxide (O2•−), and malondialdehyde (MDA) contents under low-temperature stress. In addition, nutrient contents (N, P, K, Mg, Ca, Cu, Fe, Mn, and Zn) and endogenous hormones (JA, IAA, BR, iPA, and ZR) were enhanced in roots and leaves, and GA4 and ABA were decreased. Our results suggest the up-regulation of antioxidant enzyme activities, nutrient contents, and hormone accumulation with the application of ALA increases tolerance to low-temperature stress, leading to improved cucumber seedling performance.

scholarly journals Comparative Transcriptome Analysis of Temperature-Induced Green Discoloration in Garlic

2018 ◽  
Vol 2018 ◽  
pp. 1-8
Author(s):  
Ningyang Li ◽  
Zhichang Qiu ◽  
Xiaoming Lu ◽  
Bingchao Shi ◽  
Xiudong Sun ◽  
...  
Keyword(s):  
Low Temperature ◽  
Temperature Stress ◽  
De Novo ◽  
Aminolevulinic Acid ◽  
Average Length ◽  
Transcriptome Profiling ◽  
Temperature Treatment ◽  
Low Temperature Stress ◽  
Large Numbers ◽  
Encoding Genes

Green discoloration is one of the most important problems that cause low quality of product in the processing of garlic, which can be induced by low-temperature stress. But the mechanism of low temperature-induced green discoloration is poorly understood. In the present study, the control garlic and three low temperature-treated garlic samples (stored at 4°C with 10, 15, and 40 days, respectively) were used for genome-wide transcriptome profiling analysis. A total of 49280 garlic unigenes with an average length of 1337 bp were de novo assembled, 20231 of which were achieved for functional annotation. When being suffered from 10, 15, and 40 days of low-temperature treatment, an increased degree of discoloration was observed, and a total of 4757, 4401, and 2034 unigenes showed a differential expression, respectively. Finally, 5923 differentially expressed genes (DEGs) were found to respond to the low-temperature stress, of which 3921 were identified in at least two treatments. Among these stress-responsive unigenes, there were large numbers of enzyme-encoding genes, which significantly enriched the pathway “proteasome,” many genes of which are potentially involved in the garlic discoloration, such as 7 alliinase-encoding genes, 5 γ-glutamyltranspeptidase-encoding genes, and 1 δ-aminolevulinic acid dehydratase-encoding gene. These stress-responsive enzyme-encoding genes are possibly responsible for the low-temperature-induced garlic discoloration. The identification of large numbers of DEGs provides a basis for further elucidating the mechanism of low-temperature-induced green discoloration in garlic.

scholarly journals Transcriptome-wide identification of MAPKKK genes in bermudagrass (Cynodon dactylon L.) and their potential roles in low temperature stress responses

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e10159
Author(s):  
Wei Wang ◽  
An Shao ◽  
Erick Amombo ◽  
Shugao Fan ◽  
Xiao Xu ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Low Temperature ◽  
Gene Family ◽  
Temperature Stress ◽  
Stress Responses ◽  
Cynodon Dactylon ◽  
Diploid Species ◽  
Low Temperature Stress ◽  
Biological Processes ◽  
Mapk Cascades

As upstream components of MAPK cascades, mitogen-activated protein kinase kinase kinases (MAPKKKs) act as adaptors linking upstream signaling steps to the core MAPK cascades. MAPK cascades are universal modules of signal transduction in eukaryotic organisms and play crucial roles in plant development processes and in responses to biotic and abiotic stress and signal transduction. Members of the MAPKKK gene family have been identified in several plants,however, MAPKKKs have not been systematically studied in bermudagrass (Cynodon dactylon L.). In this study, 55 potential CdMAPKKKs were produced from bermudagrass transcriptome data, of which 13 belonged to the MEKK, 38 to the Raf, and 4 to the ZIK subfamily. Multiple alignment and conserved motif analysis of CdMAPKKKs supported the evolutionary relationships inferred from phylogenetic analyses. Moreover, the distribution pattern in Poaceae species indicated that members of the MAPKKK family were conserved among almost all diploid species, and species-specific polyploidy or higher duplication ratios resulted in an expansion of the MAPKKK family. In addition, 714 co-functional links which were significantly enriched in signal transduction, responses to temperature stimuli, and other important biological processes of 55 CdMAPKKKs were identified using co-functional gene networks analysis; 30 and 19 co-functional genes involved in response to cold or heat stress, respectively, were also identified. Results of promoter analyses, and interaction network investigation of all CdMAPKKKs based on the rice homologs suggested that CdMAPKKKs are commonly associated with regulation of numerous biological processes. Furthermore, 12 and 13 CdMAPKKKs were significantly up- and downregulated, respectively, in response to low temperature stress; among them, six CdMAPKKKs were significantly induced by low temperature stress, at least at one point in time. This is the first study to conduct identification and functional analysis of the MAPKKK gene family in bermudagrass, and our results provide a foundation for further research on the functions of CdMAPKKKs in response to low temperature stress.

scholarly journals Genome-Wide Analysis of NAC Gene Family in Betula pendula

Forests ◽  
2019 ◽  
Vol 10 (9) ◽  
pp. 741 ◽  
Author(s):  
Song Chen ◽  
Xin Lin ◽  
Dawei Zhang ◽  
Qi Li ◽  
Xiyang Zhao ◽  
...  
Keyword(s):  
Low Temperature ◽  
Gene Family ◽  
Temperature Stress ◽  
Betula Pendula ◽  
Low Temperature Stress ◽  
Specific Expression ◽  
Genome Wide ◽  
Nac Gene Family ◽  
Cold Responses ◽  
Insight Into

NACs (NAM, ATAF1/2, and CUC2) are plant-specific transcription factors that play diverse roles in various plant developmental processes. In this study, we identified the NAC gene family in birch (Betula pendula) and further analyzed the function of BpNACs. Phylogenetic analysis reveals that the 114 BpNACs can be divided into seven subfamilies. We investigated the expression levels of these BpNACs in different tissues of birch including roots, xylem, leaves, and flowers, and the results showed that the BpNACs seem to be expressed higher in xylem and roots than leaves and flowers. In addition to tissue-specific expression analysis, we investigated the expression of BpNACs under low-temperature stress. A total of 21 BpNACs were differentially expressed under low-temperature stress, of which 17 were up-regulated, and four were down-regulated. Using the gene expression data, we reconstructed the gene co-expression network for the 21 low-temperature-responsive BpNACs. In conclusion, our results provide insight into the evolution of NAC genes in the B. pendula genome, and provide a basis for understanding the molecular mechanism for BpNAC-mediated cold responses in birch.

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