New Chemical Crosslinking Methods for the Identification of Transient Protein-Protein Interactions with Multiprotein Complexes

2004 ◽  
Vol 5 (4) ◽  
pp. 287-296 ◽  
Author(s):  
K. Melcher
2008 ◽  
Vol 190 (18) ◽  
pp. 6048-6059 ◽  
Author(s):  
Carine Robichon ◽  
Glenn F. King ◽  
Nathan W. Goehring ◽  
Jon Beckwith

ABSTRACT Bacterial cell division is mediated by a set of proteins that assemble to form a large multiprotein complex called the divisome. Recent studies in Bacillus subtilis and Escherichia coli indicate that cell division proteins are involved in multiple cooperative binding interactions, thus presenting a technical challenge to the analysis of these interactions. We report here the use of an E. coli artificial septal targeting system for examining the interactions between the B. subtilis cell division proteins DivIB, FtsL, DivIC, and PBP 2B. This technique involves the fusion of one of the proteins (the “bait”) to ZapA, an E. coli protein targeted to mid-cell, and the fusion of a second potentially interacting partner (the “prey”) to green fluorescent protein (GFP). A positive interaction between two test proteins in E. coli leads to septal localization of the GFP fusion construct, which can be detected by fluorescence microscopy. Using this system, we present evidence for two sets of strong protein-protein interactions between B. subtilis divisomal proteins in E. coli, namely, DivIC with FtsL and DivIB with PBP 2B, that are independent of other B. subtilis cell division proteins and that do not disturb the cytokinesis process in the host cell. Our studies based on the coexpression of three or four of these B. subtilis cell division proteins suggest that interactions among these four proteins are not strong enough to allow the formation of a stable four-protein complex in E. coli in contrast to previous suggestions. Finally, our results demonstrate that E. coli artificial septal targeting is an efficient and alternative approach for detecting and characterizing stable protein-protein interactions within multiprotein complexes from other microorganisms. A salient feature of our approach is that it probably only detects the strongest interactions, thus giving an indication of whether some interactions suggested by other techniques may either be considerably weaker or due to false positives.


2013 ◽  
Vol 8 (9) ◽  
pp. 1988-1997 ◽  
Author(s):  
Laura C. Cesa ◽  
Srikanth Patury ◽  
Tomoko Komiyama ◽  
Atta Ahmad ◽  
Erik R. P. Zuiderweg ◽  
...  

2020 ◽  
Vol 134 (24) ◽  
pp. 3259-3282
Author(s):  
Alessandra Murabito ◽  
Sophie Cnudde ◽  
Emilio Hirsch ◽  
Alessandra Ghigo

Abstract The 3′–5′-cyclic adenosine monophosphate (cAMP)/PKA pathway represents a major target for pharmacological intervention in multiple disease conditions. Although the last decade saw the concept of highly compartmentalized cAMP/PKA signaling consolidating, current means for the manipulation of this pathway still do not allow to specifically intervene on discrete cAMP/PKA microdomains. Since compartmentalization is crucial for action specificity, identifying new tools that allow local modulation of cAMP/PKA responses is an urgent need. Among key players of cAMP/PKA signaling compartmentalization, a major role is played by A-kinase anchoring proteins (AKAPs) that, by definition, anchor PKA, its substrates and its regulators within multiprotein complexes in well-confined subcellular compartments. Different tools have been conceived to interfere with AKAP-based protein–protein interactions (PPIs), and these primarily include peptides and peptidomimetics that disrupt AKAP-directed multiprotein complexes. While these molecules have been extensively used to understand the molecular mechanisms behind AKAP function in pathophysiological processes, less attention has been devoted to their potential application for therapy. In this review, we will discuss how AKAP-based PPIs can be pharmacologically targeted by synthetic peptides and peptidomimetics.


2014 ◽  
Vol 56 (2) ◽  
pp. 255-267 ◽  
Author(s):  
Yi-Hsiang Chou ◽  
Gennady Pogorelko ◽  
Zachary T. Young ◽  
Olga A. Zabotina

2007 ◽  
Vol 1 (11) ◽  
pp. 1499-1512 ◽  
Author(s):  
Chia-Wei Chang ◽  
Sheng-Chih Peng ◽  
Wen-Yao Cheng ◽  
Szu-Heng Liu ◽  
Huei-Hsuan Cheng ◽  
...  

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