scholarly journals Living in a bottle: Bacteria from sediment-associated Mediterranean waste and potential growth on polyethylene terephthalate (PET)

2021 ◽  
Author(s):  
Àngela Vidal-Verdú ◽  
Adriel Latorre-Pérez ◽  
Esther Molina-Menor ◽  
Joaquin Baixeras ◽  
Juli Peretó ◽  
...  
Keyword(s):  
Polyethylene Terephthalate ◽  
Bacterial Communities ◽  
Carbon Sources ◽  
Culturable Bacteria ◽  
Potential Growth ◽  
Pet Bottles ◽  
Ocean Pollution ◽  
Aluminum Cans ◽  
Generation Sequencing ◽  
Shed Light

Ocean pollution is a worldwide environmental challenge that could be partially tackled through microbial applications. To shed light on the diversity and applications of the bacterial communities that inhabit the sediments trapped in artificial containers, we analyzed residues (Polyethylene terephthalate (PET) bottles and aluminum cans) collected from the Mediterranean Sea by scanning electron microscopy and Next Generation Sequencing. Moreover, we set a collection of culturable bacteria from the plastisphere that were screened for their ability to use PET as a carbon source. Our results reveal that Proteobacteria are the predominant phylum in all the samples and that Rhodobacteraceae, Woeseia, Actinomarinales, or Vibrio are also abundant in these residues. Moreover, we identified marine isolates with enhanced growth in the presence of PET: Aquimarina intermedia, Citricoccus spp., and Micrococcus spp. Our results suggest that the marine environment is a source of biotechnologically promising bacterial isolates that may use PET or PET additives as carbon sources.

scholarly journals Monoterpene Enrichments Have Positive Impacts on Soil Bacterial Communities and the Potential of Application in Bioremediation

Plants ◽  
2021 ◽  
Vol 10 (11) ◽  
pp. 2536
Author(s):  
Dimitris Chalkos ◽  
Katerina Karamanoli ◽  
Despoina Vokou
Keyword(s):  
Essential Oil ◽  
Bacterial Communities ◽  
Carbon Sources ◽  
The Other ◽  
Culturable Bacteria ◽  
Aromatic Plants ◽  
Soil Bacterial Communities ◽  
Mediterranean Type Ecosystem ◽  
Soil Bacterial ◽  
Novel Applications

We study here how soil bacterial communities of different ecosystems respond to disturbances caused by enrichments with monoterpenes that are common essential oil constituents. We used fenchone, 1,8-cineol and α-pinene, and soils from phrygana, a typical Mediterranean-type ecosystem where aromatic plants abound, and from another five ecosystem types, focusing on culturable bacteria. Patterns of response were common to all ecosystems, but responses themselves were not always as pronounced in phrygana as in the other ecosystems, suggesting that these enrichments are less of a disturbance there. More specifically, soil respiration and abundance of the bacterial communities increased, becoming from below two up to 16 times as high as in control soils (for both attributes) and remained at high levels as long as these compounds were present. Bacteria that can utilize these three compounds as substrates of growth became dominant members of the bacterial communities in the enriched soils. All changes were readily reversible once monoterpene addition stopped. Bacteria with the ability to utilize these monoterpenes as carbon sources were found in soils from all ecosystems, 15 strains in total, suggesting a rather universal presence; of these, six could also utilize the organic pollutants toluene or p-xylene. These results suggest also potential novel applications of monoterpenes in combating soil pollution.

scholarly journals The microbiome in bronchiectasis

2019 ◽  
Vol 28 (153) ◽  
pp. 190048 ◽  
Author(s):  
Hollian Richardson ◽  
Alison J. Dicker ◽  
Heather Barclay ◽  
James D. Chalmers
Keyword(s):  
Disease Progression ◽  
Bacterial Communities ◽  
Interindividual Variability ◽  
Severe Disease ◽  
Novel Treatments ◽  
Lung Microbiome ◽  
Rrna Sequencing ◽  
Recent Developments ◽  
Disease Subtypes ◽  
Generation Sequencing

Bronchiectasis is increasing in prevalence worldwide, yet current treatments available are limited to those alleviating symptoms and reducing exacerbations. The pathogenesis of the disease and the inflammatory, infective and molecular drivers of disease progression are not fully understood, making the development of novel treatments challenging. Understanding the role bacteria play in disease progression has been enhanced by the use of next-generation sequencing techniques such as 16S rRNA sequencing. The microbiome has not been extensively studied in bronchiectasis, but existing data show lung bacterial communities dominated by Pseudomonas, Haemophilus and Streptococcus, while exhibiting intraindividual stability and large interindividual variability. Pseudomonas- and Haemophilus-dominated microbiomes have been shown to be linked to severe disease and frequent exacerbations. Studies completed to date are limited in size and do not fully represent all clinically observed disease subtypes. Further research is required to understand the microbiomes role in bronchiectasis disease progression. This review discusses recent developments and future perspectives on the lung microbiome in bronchiectasis.

scholarly journals Microbial community dynamics during alfalfa silage with or without clostridial fermentation

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Rongrong Li ◽  
Di Jiang ◽  
Mingli Zheng ◽  
Pengjiao Tian ◽  
Menghu Zheng ◽  
...  
Keyword(s):  
Microbial Community ◽  
Next Generation Sequencing ◽  
Bacterial Communities ◽  
Community Dynamics ◽  
Ammonia Nitrogen ◽  
Clostridium Tyrobutyricum ◽  
Microbial Community Dynamics ◽  
Vigorous Growth ◽  
Alfalfa Silage ◽  
Generation Sequencing

Abstract This study was conducted to examine the effects of Lactobacillus plantarum (LP) and sucrose (S) on clostridial community dynamics and correlation between clostridia and other bacteria in alfalfa silage during ensiling. Fresh alfalfa was directly ensiled without (CK) or with additives (LP, S, LP + S) for 7, 14, 28 and 56 days. Clostridial and bacterial communities were evaluated by next-generation sequencing. Severe clostridial fermentation occurred in CK, as evidenced by the high contents of butyric acid, ammonia nitrogen, and clostridia counts, whereas all additives, particularly LP + S, decreased silage pH and restrained clostridial fermentation. Clostridium perfringens and Clostridium butyricum might act as the main initiators of clostridial fermentation, with Clostridium tyrobutyricum functioning as the promoters of fermentation until the end of ensiling. Clostridium tyrobutyricum (33.5 to 98.0%) dominated the clostridial community in CK from 14 to 56 days, whereas it was below 17.7% in LP + S. Clostridium was negatively correlated with the genus Lactobacillus, but positively correlated with the genera Enterococcus, Lactococcus and Leuconostoc. Insufficient acidification promoted the vigorous growth of C. tyrobutyricum of silage in later stages, which was mainly responsible for the clostridial fermentation of alfalfa silage.

A Method of Profiling Microbial Communities Based on a Most-Probable-Number Assay That Uses BIOLOG Plates and Multiple Sole Carbon Sources

1999 ◽  
Vol 65 (10) ◽  
pp. 4419-4424 ◽  
Author(s):  
Masashi Gamo ◽  
Tadashi Shoji
Keyword(s):  
Bacterial Communities ◽  
Carbon Sources ◽  
High Rate ◽  
Most Probable Number ◽  
Probable Number ◽  
New Approach ◽  
Mixing Ratios ◽  
Color Development ◽  
Assay Procedure ◽  
Pure Cultures

ABSTRACT A new approach to the community-level BIOLOG assay was proposed. This assay, which we call the BIOLOG-MPN assay, is a most-probable-number (MPN) assay that uses BIOLOG plates and multiple sole carbon sources, and the profiles obtained by this assay consist of MPNs estimated for the substrates in the BIOLOG plates. In order to demonstrate the performance of the BIOLOG-MPN assay, it was applied to pure cultures, model bacterial communities that contain two strains in different ratios, and microbial community samples. MPN estimation using BIOLOG plates worked well for the substrates on which utilizers can grow at a sufficiently high rate for color development under the conditions of the assay procedure. Furthermore, the results obtained using model communities showed that the MPNs obtained reflected the mixing ratios of pure cultures in the model communities. The profiles obtained using model communities and community samples were differentiated properly by statistical analyses. The results suggest that the BIOLOG-MPN assay is a promising procedure for obtaining a quantitative picture of the community structure.

Low-Pressure Microwave Plasma Sterilization of Polyethylene Terephthalate Bottles

2008 ◽  
Vol 71 (10) ◽  
pp. 2119-2123 ◽  
Author(s):  
MICHAEL DEILMANN ◽  
HELMUT HALFMANN ◽  
NIKITA BIBINOV ◽  
JOACHIM WUNDERLICH ◽  
PETER AWAKOWICZ
Keyword(s):  
Polyethylene Terephthalate ◽  
Microwave Plasma ◽  
Treatment Time ◽  
Plasma Reactor ◽  
Challenge Test ◽  
Three Dimensional ◽  
Low Pressure ◽  
Dry Process ◽  
Pet Bottles ◽  
Plasma Sterilization

A low-pressure microwave plasma reactor was developed for sterilization of polyethylene terephthalate (PET) bottles. In contrast to the established method using aseptic filling machines based on toxic sterilants, here a microwave plasma is ignited inside a bottle by using a gas mixture of nitrogen, oxygen, and hydrogen. To that effect, a reactor setup was developed based on a Plasmaline antenna allowing for plasma ignition inside three-dimensional packages. A treatment time below 5 s is provided for a reduction of 105 and 104 CFU of Bacillus atrophaeus and Aspergillus niger, respectively, verified by means of a count reduction test. The sterilization results obtained by means of this challenge test are in accordance with requirements for aseptic packaging machines as defined by the U.S. Food and Drug Administration and the German Engineering Federation. The plasma sterilization process developed here for aseptic filling of beverages is a dry process that avoids residues and the use of maximum allowable concentrations of established sterilants, e.g., hydrogen peroxide.

scholarly journals Contrasting patterns of bacterial communities in the rearing water and gut of Penaeus vannamei in response to exogenous glucose addition

2022 ◽  
Author(s):  
Lei Huang ◽  
Haipeng Guo ◽  
Zidan Liu ◽  
Chen Chen ◽  
Kai Wang ◽  
...  
Keyword(s):  
Gut Microbiota ◽  
Bacterial Communities ◽  
Carbon Sources ◽  
Operational Taxonomic Unit ◽  
Diversity Indices ◽  
Response Patterns ◽  
Interspecies Interactions ◽  
Glucose Addition ◽  
Growth And Survival ◽  
Α Diversity

AbstractSupplementing exogenous carbon sources is a practical approach to improving shrimp health by manipulating the microbial communities of aquaculture systems. However, little is known about the microbiological processes and mechanisms of these systems. Here, the effects of glucose addition on shrimp growth performance and bacterial communities of the rearing water and the shrimp gut were investigated to address this knowledge gap. The results showed that glucose addition significantly improved the growth and survival of shrimp. Although the α-diversity indices of both bacterioplankton communities and gut microbiota were significantly decreased by adding glucose, both bacterial communities exhibited divergent response patterns to glucose addition. Glucose addition induced a dispersive bacterioplankton community but a more stable gut bacterial community. Bacterial taxa belonging to Ruegeria were significantly enriched by glucose in the guts, especially the operational taxonomic unit 2575 (OTU2575), which showed the highest relative importance to the survival rate and individual weight of shrimp, with the values of 43.8 and 40.6%, respectively. In addition, glucose addition increased the complexity of interspecies interactions within gut bacterial communities and the network nodes from Rhodobacteraceae accounted for higher proportions and linked more with the nodes from other taxa in the glucose addition group than that in control. These findings suggest that glucose addition may provide a more stable gut microbiota for shrimp by increasing the abundance of certain bacterial taxa, such as Ruegeria.

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