scholarly journals An Integrated Approach to Determine the Stock Structure of Spinyhead Croaker Collichthys lucidus (Sciaenidae) in Chinese Coastal Waters

2021 ◽  
Vol 8 ◽  
Author(s):  
Shuai Zhang ◽  
Min Li ◽  
Jiangfeng Zhu ◽  
Shannan Xu ◽  
Zuozhi Chen
Keyword(s):  
Coastal Waters ◽  
Southern China ◽  
Integrated Approach ◽  
Conservation Strategies ◽  
Biological Traits ◽  
Otolith Chemistry ◽  
Important Species ◽  
Natural Tags ◽  
Southern Chinese ◽  
Collichthys Lucidus

An integrated approach including analyses of different biological traits is a proven and powerful tool used to assess the population structures of fish species, which is vital for fishery stock conservation and management of wild resources. This study evaluates the use of three natural tags (i.e., microsatellites, parasites, and otolith nucleus chemistry) in order to describe the population structure of the spinyhead croaker, Collichthys lucidus, in the coastal waters of China, on evolutionary and ecological time scales. Spinyhead croaker was assigned with 86% accuracy to its regional origin (northern China vs. southern China) using all three natural tags. Accuracy decreased when incorporating only one type of natural tag (genetics: 19–69%; parasites: 30–60%; otolith chemistry: 51–86%) or when assigning the fish to a fine scale (sea areas: 44–64%; sampled estuaries: 19–66%). However, the overall accuracy assignment improved slightly compared with otolith chemistry (estuaries: 55 vs. 51%; sea areas: 66 vs. 64%; regions: 86 vs. 86%). Three natural tags and integrated results show that C. lucidus in Chinese coastal waters can be separated into distinct northern and southern Chinese stocks. Finally, this information should promote the development of effective conservation strategies and integrated fisheries management plans for this commercially important species.

scholarly journals Investigating the Parasitoid Community Associated with the Invasive Mealybug Phenacoccus solenopsis in Southern China

Insects ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 290
Author(s):  
Hua-Yan Chen ◽  
Hong-Liang Li ◽  
Hong Pang ◽  
Chao-Dong Zhu ◽  
Yan-Zhou Zhang
Keyword(s):  
Biological Control ◽  
Species Delimitation ◽  
Southern China ◽  
Insect Pest ◽  
Integrated Approach ◽  
Molecular Data ◽  
Coi Gene ◽  
Morphological Examination ◽  
Accurate Identification ◽  
Phenacoccus Solenopsis

The cotton mealybug Phenacoccus solenopsis Tinsley (Hemiptera: Pseudococcidae), is an emerging invasive insect pest in China. Hymenopteran parasitoids are the key organisms for suppressing populations of P. solenopsis in the field, and therefore could be used as biological agents. Accurate identification of the associated parasitoids is the critical step to assess their potential role in biological control. In this study, we facilitated the identification of the parasitoid composition of P. solenopsis using an integrated approach of species delimitation, combining morphology with molecular data. Eighteen Hymenoptera parasitoid species belonging to 11 genera of four families are recognized based on morphological examination and molecular species delimitation of the mitochondrial cytochrome c oxidase 1 (COI) gene and the 28S rDNA using the automatic barcode gap discovery (ABGD) and the Bayesian Poisson tree processes model (bPTP). Among these species, eight species are primary parasitoids with Aenasius arizonensis (Girault) (Hymenoptera: Encyrtidae) being the dominant taxon, while the other 10 species are probably hyperparasitoids, with a prevalence of Cheiloneurus nankingensis Li & Xu (Hymenoptera: Encyrtidae). These results indicate that parasitoid wasps associated with P. solenopsis from China are diverse and the integrated taxonomic approach applied in this study could enhance the accurate identification of these parasitoids that should be assessed in future biological control programs.

Genetic diversity of the extremely rare Habenaria dentata and the rare Habenaria linearifolia (Orchidaceae) in South Korea: implications for population history and conservation

2018 ◽  
Vol 151 (1) ◽  
pp. 48-60
Author(s):  
Mi Yoon Chung ◽  
Hoa Thi Quynh Le ◽  
Sungwon Son ◽  
Huai Zhen Tian ◽  
Myong Gi Chung
Keyword(s):  
Genetic Diversity ◽  
Southern China ◽  
Geographic Location ◽  
Population History ◽  
Population Variation ◽  
Conservation Strategies ◽  
Ancestral Population ◽  
Allozyme Diversity ◽  
Glacial Origin

Background and aims – Since historical events often leave an indelible mark on levels of genetic diversity of plant populations, one may indirectly infer their evolutionary history with the help of current patterns of genetic diversity. The terrestrial orchid Habenaria dentata, an element of warm-temperate/subtropical vegetation, reaches its northernmost limits in the Korean Peninsula, and thus it is extremely rare there. As H. dentata was absent from the Peninsula during the Last Glacial Maximum (LGM), it is likely to be of post-glacial origin having arrived from either a single refugium or multiple refugia. However, its rare, temperate/boreal congener H. linearifolia might have persisted in situ in either macrorefugia or microrefugia on the Peninsula during the LGM.Methods – To test which hypothesis is most appropriate for each species, we investigated levels of allozyme-based (17 loci) genetic diversity and population genetic structure in the two only known populations of H. dentata and in 12 populations of H. linearifolia.Key results – No allozyme diversity was found in H. dentata (He = 0.000), whereas H. linearifolia exhibited low within-population variation (He = 0.060) and high among-population differentiation (FST = 0.237). We found little association between populations in relation to their geographic location; several populations presented individuals belonging to different clusters.Conclusions – Our results suggest that H. dentata likely originated from a single ancestral population (perhaps from southern Japan or southern China) through post-glacial dispersal, whereas H. linearifolia probably survived the LGM in situ in microrefugia situated at low to mid-elevated regions. We further suggest that separate conservation strategies for each species should be employed, given that the two taxa have different ecological and demographic traits and harbour different levels of genetic diversity.

scholarly journals Genome-Wide Analysis Reveals Genetic Structure and Selective Sweeps in Chinese Indigenous Pig Breeds

2019 ◽  
Author(s):  
Xiong Tong ◽  
Lianjie Hou ◽  
Weiming He ◽  
Chugang Mei ◽  
Bo Huang ◽  
...  
Keyword(s):  
Yangtze River ◽  
North China ◽  
Phenotypic Diversity ◽  
Southern China ◽  
Linkage Disequilibrium Block ◽  
Genetic Material ◽  
Morphological Characteristics ◽  
Central China ◽  
Pig Breeds ◽  
Southern Chinese

Abstract Background Chinese indigenous pigs exhibit considerable phenotypic diversity, but their population structure and the genetic basis of agriculturally important traits have not been explored. Results Here, we sequenced the whole genomes of 24 individual pigs representing 22 breeds distributed throughout China. For comparison with European and commercial breeds (one pig per breed), we integrated seven published pig genomes with our new genomes. Our results showed that pig domestication occurred at three places in Southeastern Asia, namely the Mekong region, the middle to downstream regions of the Yangtze River, and Tibetan highlands. Moreover, we demonstrated that classic morphological characteristics such as coat color are not consistent with genetic data. We found that genetic material from European pigs likely introgressed into five Chinese breeds. Two new subpopulations of domestic pigs have been identified in South and North China that encompass morphology-based criteria. The Southern Chinese subpopulation comprises the classical Southern China Type and part of the Central China Type, whereas the Northern Chinese subpopulation comprises the North China Type, the Lower Yangtze River Basin Type, the Southwest Type, the Plateau Type, and the remainder of the Central China Type. Eight haplotypes and two recombination sites were identified within a conserved 40.09 Mb linkage-disequilibrium block on the X chromosome. Potential selection and domestication signatures were identified, mainly influencing body size, along with adaptations to cold and hot temperature environments. Conclusions Our findings provide insights into the phylogeny of Chinese indigenous pig breeds, and will be of enormous benefit in identifying beneficial genes to develop superior pig breeds.

scholarly journals HPV Prevalence and Detection of Rare HPV Genotypes in Hong Kong Women from Southern China with Cytological Abnormalities

ISRN Virology ◽  
2013 ◽  
Vol 2013 ◽  
pp. 1-5 ◽  
Author(s):  
Ngai Na Chloe Co ◽  
Lai-On Chu ◽  
Joseph K. F. Chow ◽  
Joseph W. O. Tam ◽  
Enders K. O. Ng
Keyword(s):  
Chinese Women ◽  
Southern China ◽  
Invasive Cervical Cancer ◽  
Cervical Lesions ◽  
Hpv Prevalence ◽  
Southern Chinese ◽  
Test Kit ◽  
Hpv Genotypes ◽  
Hpv Types ◽  
Different Characteristics

Human papillomavirus (HPV) has been identified as the primary cause of cervical squamous intraepithelial lesion and invasive cervical cancer. The emergence of various commercial HPV genotyping kits with different characteristics facilitates the detection of most high-risk and low-risk HPV genotypes, but the rare HPV types are usually underdiagnosed. In the present study, HPV detection was performed using the GenoFlow HPV Array Test kit (DiagCor Bioscience), which can identify 33 HPV subtypes by specific probes. Besides, a HPV consensus probe (universal probe) was designed to capture not only the 33 genotypes but also rare subtypes. Of the 1643 Southern Chinese women tested between 2012 and 2013, the HPV prevalence was 42.3%, with HPV 52 (139/1643, 8.5%), HPV 81 (89/1643, 5.4%), and HPV 16 (63/1643, 3.8%) being the most frequent subtypes detected. Among all 695 HPV-positive cases, 56 (8.1%) cases were only detected by the universal probe, in which 5 were either ASCUS or LSIL cases. Sequencing results confirmed HPV types 30, 91, and 74, and the intratypic variants of HPV 72 and 82 were present in the 5 cases. The result suggests that some rare HPV subtypes might be involved in cervical lesions.

Taxonomy and phylogeny of Pseudovorticella littoralis sp. n. and P. alani sp. n. (Ciliophora: Peritrichia) from coastal waters of southern China

2019 ◽  
Vol 71 ◽  
pp. 125635
Author(s):  
Yong Zhang ◽  
Zhuo Shen ◽  
Fan Zhang ◽  
Ying Yu ◽  
Jiqiu Li ◽  
...  
Keyword(s):  
Coastal Waters ◽  
Southern China

Phylogeography of the endangered black-breasted leaf turtle (Geoemyda spengleri) and conservation implications for other chelonians

2009 ◽  
Vol 30 (1) ◽  
pp. 57-62 ◽  
Author(s):  
Haitao Shi ◽  
Yunming Mo ◽  
Markus Auer ◽  
Mario Vargas-Ramírez ◽  
Anna Hundsdörfer ◽  
...  
Keyword(s):  
Southern China ◽  
Hainan Island ◽  
Sister Group ◽  
Ex Situ ◽  
Phylogeographic Structure ◽  
Northern Vietnam ◽  
Conservation Implications ◽  
Mitochondrial Haplotypes ◽  
Southern Chinese

AbstractKnown-locality samples of Geoemyda spengleri from three Chinese provinces (Guangdong, Guangxi, Hainan) and northern Vietnam provide clear evidence for phylogeographic structure in a southern Chinese chelonian species. Within southern China two clades of mitochondrial haplotypes from east and west of the Xi Jiang together form the sister group to haplotypes from northern Vietnam. Turtles from Hainan Island harbour haplotypes of the same clade as turtles from Guangxi, 400 km distant. These findings suggest that phylogeographic differentiation may have once existed in other co-distributed, highly endangered chelonian species. The possibility of phylogeographic structure should be considered in any in-situ and ex-situ conservation program for Chinese chelonians.

Vertical dynamics in community functioning of biofilm-dwelling ciliates during the colonisation process in coastal waters of the Yellow Sea

2019 ◽  
Vol 70 (11) ◽  
pp. 1611 ◽  
Author(s):  
Xiaoyun Bai ◽  
Congcong Guo ◽  
Mamun Abdullah Al ◽  
Alan Warren ◽  
Henglong Xu
Keyword(s):  
Functional Diversity ◽  
Functional Traits ◽  
Coastal Waters ◽  
Yellow Sea ◽  
Northern China ◽  
Diversity Indices ◽  
Functional Trait ◽  
The Yellow Sea ◽  
Biological Traits ◽  
Trait Distribution

Multifunctional trait analysis is increasingly recognised as an effective tool for assessing ecosystem function and environmental quality. Here, a baseline study was performed at four depths (i.e. 1, 2, 3.5 and 5m) in Yellow Sea coastal waters of northern China in order to determine the optimal depth for bioassessment using biological traits of biofilm-dwelling ciliates. Community-weighted means (CWM) from functional traits system were used to summarise the trait distribution and functional diversity of ciliates among the four depths during a 1-month colonisation period. Functional trait distribution revealed a clear temporal variation among the four depths. In total, 3 of 17 functional traits (i.e. feeding type, body size and flexibility) showed significant temporal patterns. Bootstrapped averaging and permutational multivariate analysis of variance (PERMANOVA) tests demonstrated that the colonisation pattern of biofilm-dwelling ciliates as expressed by CWM at 1 and 2m differed significantly from those at 3.5 and 5m. Functional diversity indices showed lower variability at 1 and 2m than at 3.5 and 5m. These results suggest that 1 and 2m are the preferred sampling depths for bioassessment of marine water quality using biological traits of biofilm-dwelling ciliates.

scholarly journals Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle

2020 ◽  
Vol 11 ◽  
Author(s):  
Yuqiang Liu ◽  
Lingyang Xu ◽  
Liu Yang ◽  
Guoyao Zhao ◽  
Junya Li ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Southern China ◽  
Local Environment ◽  
Candidate Snps ◽  
Signature Analysis ◽  
Significant Information ◽  
Selection Signature ◽  
Cattle Breeds ◽  
Southern Chinese ◽  
Candidate Regions

Chinese local cattle with a high level of genetic diversity mainly originate from two subspecies; the cattle in northern China are primarily Bos Taurus, and the cattle in southern China are primarily Bos indicus. Cattle from southern China are characterized by a specific phenotype and adapted to the local environment. This study explored the genetic diversity, degree of admixture, and selection signature in eight local cattle breeds in southern China. The lowest level of heterozygosity was found in Hainan and Nandan cattle from Hainan and Guangxi province, respectively, whereas the highest level of heterozygosity was detected in Zhaotong cattle from Yunnan province. A neighbor-joining phylogenetic tree analysis clearly separated Lufeng cattle from other breeds, whereas Leiqiong and Hainan cattle have some crossover. Based on linkage disequilibrium-filtered single nucleotide polymorphisms (SNPs), the admixture analysis revealed two clusters corresponding to the taurine and indicine cattle lineages, and the local cattle breeds from southern China showed a certain degree of admixture. When K = 4 and 9, we found a slight separation among Leiqiong, Lufeng, and Hainan cattle. Meanwhile, we performed a selection signature analysis in Hainan, Leiqiong, and Lufeng cattle distributed in the extreme south of China, using the integrated haplotype score (iHS), Rsb statistic, and BayeScan software. Using the iHS approach, we identified 251, 270, and 256 candidate regions in Lufeng, Leiqiong, and Hainan cattle, respectively. Moreover, we identified 184, 174, and 146 candidate regions in pairwise comparisons of Leiqiong vs. Lufeng, Leiqiong vs. Hainan, and Hainan vs. Lufeng cattle using the Rsb approach. In addition, we identified 76 loci with a total of 48 genes under selection, based on the FST approach. Several candidate genes under selection were found to be related to meat quality, immunity, and adaptation to the local environment in southern China. Our results provide significant information about the genetic differences among the cattle breeds from southern China and the possible cause of difference in breed-specific characteristics. Selection signature analysis identified a few candidate SNPs and genes related to certain important traits of these cattle. In general, our results provide valuable insights into the genetic basis of specific traits under selection in certain local cattle breeds.

scholarly journals Conservation of threatened plant species in botanic garden reserves in Brazil

Oryx ◽  
2016 ◽  
Vol 52 (1) ◽  
pp. 108-115 ◽  
Author(s):  
Maria Lúcia M. N. da Costa ◽  
Peter Wyse Jackson ◽  
Ricardo Avancini Fernandes ◽  
Ariane Luna Peixoto
Keyword(s):  
Plant Species ◽  
Threatened Species ◽  
In Situ Conservation ◽  
Integrated Approach ◽  
Ex Situ ◽  
Conservation Strategies ◽  
Botanic Gardens ◽  
Threatened Plant Species ◽  
Integrated Conservation ◽  
Scientific Value

AbstractOver the last few decades botanic gardens worldwide have been encouraged to adopt complementary measures for the conservation of plant species from their own regions, combining in situ conservation efforts with ex situ methods, both in cultivation and in storage. This integrated approach is particularly important for botanic gardens in the tropics, which face the challenge of conserving a highly diverse and often threatened flora. We gathered information on the occurrence of threatened species in the natural vegetation reserves of 21 Brazilian botanic gardens. The data were collected from herbarium records in the database of the National Centre for Flora Conservation, and from the available plant inventories of these reserves. The results indicate that 148 species from the List of Threatened Species of Brazilian Flora are recorded as having been collected in the reserves. Of these, 51 species were maintained in the living collections of 18 botanic gardens and 83 species were recorded in federally protected areas. The occurrence of threatened species in the reserves of botanic gardens highlights the scientific value of these areas, as well as their biological, social and cultural importance for conservation. The results may be used to inform the planning of integrated conservation strategies for threatened species.

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