Effects of Preferential Incorporation of Carboxylic Acids on the Crystal Growth and Physicochemical Properties of Aragonite

The preferential incorporation of carboxylic acids into aragonite and its effects on the crystal growth and physicochemical properties of aragonite were systematically investigated using a seeded co-precipitation system with different carboxylic acids (citric, malic, acetic, glutamic, and phthalic). Aragonite synthesized in the presence of citric and malic acids showed a remarkable decrease in the crystallinity and size of crystallite, and the retardation of crystal growth distinctively changed the crystal morphology. The contents of citric acid and malic acid in the aragonite samples were 0.65 wt % and 0.19 wt %, respectively, revealing that the changes in the physicochemical properties of aragonite were due to the preferential incorporation of such carboxylic acids. Speciation modeling further confirmed that citric acid with three carboxyl groups dominantly existed as a metal–ligand, (Ca–citrate)−, which could have a strong affinity toward the partially positively charged surface of aragonite. This indicates why citric acid was most favorably incorporated among other carboxylic acids. Our results demonstrate that the number of carboxyl functional groups strongly affects the preferential incorporation of carboxylic acids into aragonite; however, it could be suppressed by the presence of other functional groups or the structural complexity of organic molecules.

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Organic-ligand-assisted hydrothermal synthesis of ultrafine and hydrophobic ZnO nanoparticles

Journal of Materials Research ◽

10.1557/jmr.2010.0037 ◽

2010 ◽

Vol 25 (2) ◽

pp. 219-223 ◽

Cited By ~ 13

Author(s):

Tahereh Mousavand ◽

Satoshi Ohara ◽

Takashi Naka ◽

Mitsuo Umetsu ◽

Seiichi Takami ◽

...

Keyword(s):

Crystal Growth ◽

Hydrothermal Synthesis ◽

Carboxylic Acids ◽

Functional Groups ◽

Zno Nanoparticles ◽

Organic Ligand ◽

Polymer Matrices ◽

Organic Modifiers ◽

Hydrothermal Conditions ◽

Zno Particles

In this study, we report the synthesis of uniform and narrowly size-distributed ZnO nanoparticles with sizes of approximately 3 nm; the nanoparticles were prepared by means of organic-ligand-assisted hydrothermal conditions with various organic modifiers. The results obtained herein revealed that among the various functional groups tested (alcohols, aldehydes, carboxylic acids, and amines), only hexanol effectively controlled the nucleation and crystal growth of spherical ZnO nanoparticles. The use of hexanol also caused the surface of the ZnO particles to change from hydrophilic to hydrophobic, which would enhance the dispersion of these particles in polymer matrices, paints, cosmetics, and other organic application media.

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Hydration Free Energies of Organic Molecules in the FreeSolv Database Calculated with Polarized Atom In Molecules Atomic Charges and the GAFF Force Field.

10.26434/chemrxiv.6015611.v1 ◽

2018 ◽

Author(s):

Maximiliano Riquelme ◽

Alejandro Lara ◽

David L. Mobley ◽

Toon Vestraelen ◽

Adelio R Matamala ◽

...

Keyword(s):

Force Field ◽

Functional Groups ◽

Electrostatic Interactions ◽

Organic Molecules ◽

Force Fields ◽

Chemical Elements ◽

Atomic Charges ◽

Free Energies ◽

Molecular Systems ◽

Solvent Model

<div>Computer simulations of bio-molecular systems often use force fields, which are combinations of simple empirical atom-based functions to describe the molecular interactions. Even though polarizable force fields give a more detailed description of intermolecular interactions, nonpolarizable force fields, developed several decades ago, are often still preferred because of their reduced computation cost. Electrostatic interactions play a major role in bio-molecular systems and are therein described by atomic point charges.</div><div>In this work, we address the performance of different atomic charges to reproduce experimental hydration free energies in the FreeSolv database in combination with the GAFF force field. Atomic charges were calculated by two atoms-in-molecules approaches, Hirshfeld-I and Minimal Basis Iterative Stockholder (MBIS). To account for polarization effects, the charges were derived from the solute's electron density computed with an implicit solvent model and the energy required to polarize the solute was added to the free energy cycle. The calculated hydration free energies were analyzed with an error model, revealing systematic errors associated with specific functional groups or chemical elements. The best agreement with the experimental data is observed for the MBIS atomic charge method, including the solvent polarization, with a root mean square error of 2.0 kcal mol<sup>-1</sup> for the 613 organic molecules studied. The largest deviation was observed for phosphor-containing molecules and the molecules with amide, ester and amine functional groups.</div>

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Generation of Phosphoranyl Radicals via Photoredox Catalysis Enables Voltage–Independent Activation of Strong C–O Bonds

10.26434/chemrxiv.6349253 ◽

2018 ◽

Author(s):

Erin Stache ◽

Alyssa B. Ertel ◽

Tomislav Rovis ◽

Abigail G. Doyle

Keyword(s):

Carboxylic Acids ◽

Functional Groups ◽

Single Step ◽

Direct Access ◽

Photoredox Catalysis ◽

Acyl Radical ◽

Synthetic Strategy ◽

Acyl Radicals ◽

Benzyl Radicals ◽

Aliphatic Carboxylic Acids

Alcohols and carboxylic acids are ubiquitous functional groups found in organic molecules that could serve as radical precursors, but C–O bonds remain difficult to activate. We report a synthetic strategy for direct access to both alkyl and acyl radicals from these ubiquitous functional groups via photoredox catalysis. This method exploits the unique reactivity of phosphoranyl radicals, generated from a polar/SET crossover between a phosphine radical cation and an oxygen centered nucleophile. We first show the desired reactivity in the reduction of benzylic alcohols to the corresponding benzyl radicals with terminal H-atom trapping to afford the deoxygenated product. Using the same method, we demonstrate access to synthetically versatile acyl radicals which enables the reduction of aromatic and aliphatic carboxylic acids to the corresponding aldehydes with exceptional chemoselectivity. This protocol also transforms carboxylic acids to heterocycles and cyclic ketones via intramolecular acyl radical cyclizations to forge new C–O, C–N and C–C bonds in a single step.

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Doping of Mg on ZnO Nanorods Demonstrated Improved Photocatalytic Degradation and Antimicrobial Potential with Molecular Docking Analysis

Nanoscale Research Letters ◽

10.1186/s11671-021-03537-8 ◽

2021 ◽

Vol 16 (1) ◽

Author(s):

Muhammad Ikram ◽

Sidra Aslam ◽

Ali Haider ◽

Sadia Naz ◽

Anwar Ul-Hamid ◽

...

Keyword(s):

Molecular Docking ◽

Functional Groups ◽

Zno Nanorods ◽

Docking Studies ◽

Trapping Efficiency ◽

Wurtzite Phase ◽

Binding Score ◽

Doped Zno ◽

Co Precipitation ◽

Mg Doped

AbstractVarious concentrations of Mg-doped ZnO nanorods (NRs) were prepared using co-precipitation technique. The objective of this study was to improve the photocatalytic properties of ZnO. The effect of Mg doping on the structure, phase constitution, functional groups presence, optical properties, elemental composition, surface morphology and microstructure of ZnO was evaluated with XRD, FTIR, UV–Vis spectrophotometer, EDS, and HR-TEM, respectively. Optical absorption spectra obtained from the prepared samples showed evidence of blueshift upon doping. XRD results revealed hexagonal wurtzite phase of nanocomposite with a gradual decrease in crystallite size with Mg addition. PL spectroscopy showed trapping efficiency and migration of charge carriers with electron–hole recombination behavior, while HR-TEM estimated interlayer d-spacing. The presence of chemical bonding, vibration modes and functional groups at the interface of ZnO was revealed by FTIR and Raman spectra. In this study, photocatalytic, sonocatalytic and sonophotocatalytic performance of prepared NRs was systematically investigated by degrading a mixture of methylene blue and ciprofloxacin (MBCF). Experimental results suggested that improved degradation performance was shown by Mg-doped ZnO NRs. We believe that the product synthesized in this study will prove to be a beneficial and promising photocatalyst for wastewater treatment. Conclusively, Mg-doped ZnO exhibited substantial (p < 0.05) efficacy against gram-negative (G-ve) as compared to gram-positive (G+ve) bacteria. In silico molecular docking studies of Mg-doped ZnO NRs against DHFR (binding score: − 7.518 kcal/mol), DHPS (binding score: − 6.973 kcal/mol) and FabH (− 6.548 kcal/mol) of E. coli predicted inhibition of given enzymes as possible mechanism behind their bactericidal activity.

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A chemoinformatic analysis of atoms, scaffolds and functional groups in natural products

Physical Sciences Reviews ◽

10.1515/psr-2019-0096 ◽

2021 ◽

Vol 0 (0) ◽

Cited By ~ 1

Author(s):

Joelle Ngo Hanna ◽

Boris D. Bekono ◽

Luc C. O. Owono ◽

Flavien A. A. Toze ◽

James A. Mbah ◽

...

Keyword(s):

Natural Products ◽

Drug Discovery ◽

Physicochemical Properties ◽

Functional Groups ◽

Atomic Composition ◽

Synthetic Compounds ◽

Chemical Libraries ◽

Synthetic Drugs ◽

Drugs Analysis ◽

Chemical Class

Abstract In the quest to know why natural products (NPs) have often been considered as privileged scaffolds for drug discovery purposes, many investigations into the differences between NPs and synthetic compounds have been carried out. Several attempts to answer this question have led to the investigation of the atomic composition, scaffolds and functional groups (FGs) of NPs, in comparison with synthetic drugs analysis. This chapter briefly describes an atomic enumeration method for chemical libraries that has been applied for the analysis of NP libraries, followed by a description of the main differences between NPs of marine and terrestrial origin in terms of their general physicochemical properties, most common scaffolds and “drug-likeness” properties. The last parts of the work describe an analysis of scaffolds and FGs common in NP libraries, focusing on huge NP databases, e.g. those in the Dictionary of Natural Products (DNP), NPs from cyanobacteria and the largest chemical class of NP – terpenoids.

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Rosuvastatin cocrystals: an attempt to modulate physicochemical parameters

Future Journal of Pharmaceutical Sciences ◽

10.1186/s43094-021-00213-7 ◽

2021 ◽

Vol 7 (1) ◽

Author(s):

Venkata Deepthi Vemuri ◽

Srinivas Lankalapalli

Keyword(s):

Physicochemical Properties ◽

Dissolution Rate ◽

Functional Groups ◽

Preliminary Investigation ◽

Scale Up ◽

Solvent Evaporation ◽

Molar Ratio ◽

The Novel ◽

Formulation Development ◽

Hydrogen Bond Interaction

Abstract Background The meager physicochemical properties like low solubility and low dissolution rate of rosuvastatin calcium remain as an obstruction for formulation development. In the present work, we explore the evolution of rosuvastatin cocrystal, which may offer the synergetic physico-chemical properties of the drug. Cocrystal crafting depends on two possible intermolecular interactions; heteromeric and the homomeric selection of compounds with complementary functional groups are contemplated as a possible cause of supramolecular synthons in cocrystal formation. Specifically, cocrystals of rosuvastatin with l-asparagine and l-glutamine with molar ratio (1:1) were fabricated by using slow solvent evaporation and slow evaporation techniques. Novel cocrystals of rosuvastatin-asparagine (RSC-C) and rosuvastatin-glutamine (RSC-G) cocrystals obtained by slow solvent evaporation were utilized for preliminary investigation and further scale-up was done by using the solvent evaporation technique. Results The novel cocrystals showed a new characteristic of powder X-ray diffraction, thermograms of differential scanning calorimetry, 1H liquid FT-NMR spectra, and scanning electron microscopy. These results signify the establishment of intermolecular interaction within the cocrystals. In both the novel cocrystals, rosuvastatin was determined to be engaged in the hydrogen bond interaction with the complementary functional groups of l-asparagine and l-glutamine. Compared with the pure rosuvastatin, RSC-C and RSC-G cocrystal showed 2.17-fold and 1.60-fold improved solubility respectively. The dissolution test showed that the RSC-C and RSC-G cocrystal exhibited 1.97-fold and 1.94-fold higher dissolution rate than the pure rosuvastatin in pH6.8 phosphate buffer respectively. Conclusion Modulation in the chemical environment, improvement in the solubility, and dissolution rate demonstrated the benefit of co-crystallization to improve the physicochemical properties of the drug. Graphical abstract

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