scholarly journals Transcriptomic Analysis of Leaf Sheath Maturation in Maize

2019 ◽  
Vol 20 (10) ◽  
pp. 2472 ◽  
Author(s):  
Lei Dong ◽  
Lei Qin ◽  
Xiuru Dai ◽  
Zehong Ding ◽  
Ran Bi ◽  
...  
Keyword(s):  
Leaf Blade ◽  
Crop Yields ◽  
Transcriptional Profiling ◽  
Homeobox Gene ◽  
Lignin Biosynthesis ◽  
Gene Families ◽  
Longitudinal Axis ◽  
Leaf Sheath ◽  
Morphological Development ◽  
Maize Leaf

The morphological development of the leaf greatly influences plant architecture and crop yields. The maize leaf is composed of a leaf blade, ligule and sheath. Although extensive transcriptional profiling of the tissues along the longitudinal axis of the developing maize leaf blade has been conducted, little is known about the transcriptional dynamics in sheath tissues, which play important roles in supporting the leaf blade. Using a comprehensive transcriptome dataset, we demonstrated that the leaf sheath transcriptome dynamically changes during maturation, with the construction of basic cellular structures at the earliest stages of sheath maturation with a transition to cell wall biosynthesis and modifications. The transcriptome again changes with photosynthesis and lignin biosynthesis at the last stage of sheath tissue maturation. The different tissues of the maize leaf are highly specialized in their biological functions and we identified 15 genes expressed at significantly higher levels in the leaf sheath compared with their expression in the leaf blade, including the BOP2 homologs GRMZM2G026556 and GRMZM2G022606, DOGT1 (GRMZM2G403740) and transcription factors from the B3 domain, C2H2 zinc finger and homeobox gene families, implicating these genes in sheath maturation and organ specialization.

Sectors expressing the homeobox gene liguleless3 implicate a time-dependent mechanism for cell fate acquisition along the proximal-distal axis of the maize leaf

Development ◽  
1997 ◽  
Vol 124 (24) ◽  
pp. 5097-5106 ◽  
Author(s):  
G.J. Muehlbauer ◽  
J.E. Fowler ◽  
M. Freeling
Keyword(s):  
Cell Fate ◽  
Homeobox Gene ◽  
Longitudinal Axis ◽  
Cell Types ◽  
Transverse Dimension ◽  
Leaf Sheath ◽  
Wild Type ◽  
Cell Fates ◽  
Maize Leaf ◽  
Gradual Process

The longitudinal axis of the maize leaf is composed of, in proximal to distal order, sheath, ligule, auricle and blade. The semidominant Liguleless3-O (Lg3-O) mutation disrupts leaf development at the ligular region of the leaf midrib by transforming blade to sheath. In a previous study, we showed that leaf sectors of Lg3 mutant activity are cell nonautonomous in the transverse dimension and can confer several alternative developmental fates (Fowler, Muehlbauer and Freeling (1996) Genetics 143, 489–503). In our present study we identify five Lg3 sector types in the leaf: sheath-like with displaced ligule (sheath-like), sheath-like with ectopic ligule (ectopic ligule), auricle-like, macro-hairless blade and wild-type blade. The acquisition of a specific sector fate depends on the timing of Lg3 expression. Early Lg3 expression results in adoption of the sheath-like phenotype at the ligule position (a proximal cell fate), whereas later Lg3 expression at the same position results in one of the more distal cell fates. Furthermore, sheath-like Lg3 sectors exhibit a graded continuum of phenotypes in the transformed blade region from the most proximal (sheath) to the most distal (wild-type blade), suggesting that cell fate acquisition is a gradual process. We propose a model for leaf cell fate acquisition based on a timing mechanism whereby cells of the leaf primordium progress through a maturation schedule of competency stages which eventually specify the cell types along the proximal to distal axis of the leaf. In addition, the lateral borders between Lg3 ‘on’ sectors and wild-type leaf sometimes provide evidence of no spreading of the transformed phenotype. In these cases, competency stages are inherited somatically.

scholarly journals Dynamic Interactions and the Evolutionary Genetics of Dental Patterning

1998 ◽  
Vol 9 (4) ◽  
pp. 369-398 ◽  
Author(s):  
K.M. Weiss ◽  
D.W. Stock ◽  
Z. Zhao
Keyword(s):  
Morphological Structure ◽  
Homeobox Gene ◽  
Evolutionary Genetics ◽  
Gene Families ◽  
Developmental Genetics ◽  
Dynamic Interactions ◽  
Extracellular Signaling ◽  
Combinatorial Codes ◽  
Tooth Type ◽  
Mammalian Teeth

The mammalian dentition is a segmental, or periodically arranged, organ system whose components are arrayed in specific number and in regionally differentiated locations along the linear axes of the jaws. This arrangement evolved from simpler dentitions comprised of many single-cusp teeth of relatively indeterminate number. The different types of mammalian teeth have subsequently evolved as largely independent units. The experimentally documented developmental autonomy of dental primordia shows that the basic dental pattern is established early in embryogenesis. An understanding of how genetic patterning processes may work must be consistent with the different modes of development, and partially independent evolution, of the upper and lower dentition in mammals. The periodic nature of the location, number, and morphological structure of teeth suggests that processes involving the quantitative interaction of diffusible signaling factors may be involved. Several extracellular signaling molecules and their interactions have been identified that may be responsible for locating teeth along the jaws and for the formation of the incisor field. Similarly, the wavelike expression of signaling factors within developing teeth suggests that dynamic interactions among those factors may be responsible for crown patterns. These factors seem to be similar among different tooth types, but the extent to which crown differences can be explained strictly in terms of variation in the parameters of interactions among the same genes, as opposed to tooth-type-specific combinatorial codes of gene expression, is not yet known. There is evidence that combinatorial expression of intracellular transcription factors, including homeobox gene families, may establish domains within the jaws in which different tooth types are able to develop. An evolutionary perspective can be important for our understanding of dental patterning and the designing of appropriate experimental approaches, but dental patterns also raise basic unresolved questions about the nature of the evolutionary assumptions made in developmental genetics.

Phomopsis oryzae-sativae. [Descriptions of Fungi and Bacteria].

1980 ◽  
Author(s):  
E. Punithalingam
Keyword(s):  
Geographical Distribution ◽  
Leaf Blade ◽  
Leaf Sheath ◽  
Advanced Stage ◽  
Collar Rot ◽  
Oryza Saliva ◽  
Water Splash

Abstract A description is provided for Phomopsis oryzae-sativae. Information is included on the disease caused by the organism, its transmission, geographical distribution, and hosts. HOST: Oryza saliva. DISEASE: Collar rot of rice, appearing at the end of tillering stage. Visible symptoms are small dark brown lesions at the base of the auricle of the topmost fully expanded leaf. These lesions enlarge to cover the whole auricle and in the advanced stage lesions extend to the adjacent parts of the leaf sheath and leaf blade. Within 14 days the blade joint at the top of leaf sheath turns dark brown and then rots, causing the leaf blade to drop off (Kanjanasoon, 1962). GEOGRAPHICAL DISTRIBUTION: Asia (Thailand). TRANSMISSION: No studies reported. Conidia presumably dispersed by water splash.

Rumen degradation of straw 4. Selection and degradation of morphological components of barley straw by sheep

1988 ◽  
Vol 47 (1) ◽  
pp. 105-110 ◽  
Author(s):  
P. K. Bhargava ◽  
E. R. Ørskov ◽  
T. K. Walli
Keyword(s):  
Leaf Blade ◽  
Dry Matter ◽  
Leaf Sheath ◽  
Practical Significance ◽  
Barley Straw ◽  
Rumen Degradation ◽  
Whole Plant ◽  
Ad Libitum ◽  
The Mathematical Model ◽  
Selection Of

AbstractExperiments were made to study the proportion, chemical composition, and rumen degradability of the morphological components of barley straw (Corgi variety) and to study the selection of these components by sheep. The proportions in the harvested straw dry matter (DM) as leaf blade, leaf sheath, stem and chaff were 128, 314, 500 and 58 g/kg DM, respectively. The different components of straw on analysis proved to have very different concentrations of nitrogen and neutral-detergent cellulase digestibility. The leaf blades had the highest and the stems the lowest values. The degradabilities of DM in the components and in the whole straw were determined by measuring DM loss from samples incubated in nylon bags for various periods in the rumen of sheep. Responses were measured using the mathematical model p = a+b (1–e−ct) where p is DM loss, (a+b) potential degradability, c the rate constant of DM loss and t is the time of incubation. DM losses decreased in the order leaf blades > leaf sheath > whole plant > chaff > stems. Leaf blades also had the highest potential degradability and rate of degradation.In another trial, five sheep were offered unchopped barley straw ad libitum. There were five treatment periods in which sheep were allowed to leave uneaten proportionately 0·2, 0·3, 0·4, 0·5 and 0·7 of the straw on offer for assessing the animal's selection of the morphological components of that straw. The amount of leaf blade in the material consumed increased in largely a linear (P < 0·01) fashion with the amount of excess allowance. The proportion of stem eaten varied conversely. The selection of leaf sheath was less apparent. Little stem was consumed until the proportion of leaf blade in the food available decreased below proportionately 0·4. The practical significance of the study is discussed.

scholarly journals Distinctness of 110 rice (Oryza sativa L.) varieties of Bangladesh through morphological traits

2014 ◽  
Vol 12 (1) ◽  
pp. 29-36
Author(s):  
MS Rahman ◽  
MKH Sohag ◽  
L Rahman
Keyword(s):  
Morphological Traits ◽  
Leaf Blade ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Leaf Sheath ◽  
Seed Colour ◽  
Rice Varieties ◽  
Nodal Root ◽  
Two Hybrid ◽  
Research Institute

A total of 110 rice varieties of which 108 local (From Bangladesh Rice Research Institute) and two hybrid varieties (From ACI Ltd. Bangladesh) were used to identify the morphological traits during July, 2008 to June, 2009. These varieties represented four types viz. T. Aman (n=92), B. Aman (n=15), Boro (n=2) and Jhum accession (n=1) as described by Bangladesh Rice Research Institute’s literature. Though all these materials were varied ecotypically but grown in one (T. Aman) season. Irrespective of groups of all, 90 varieties were appeared distinctly morphologically from others due to seed colour; stigma colour; anthocyanin colouration of leaf sheath, nodes and lemma:palea, presence of awn and nodal root. Among 90 distinct varieties 19 were distinctly different from others by four traits, nine by three traits, 24 by two traits and 38 varieties by only single trait. The rest 20 varieties were distinguished flag leaf: attitude of the leaf blade. This was done to assess the quality traits of distinctness as major concern and was noninfluenced by the environment. DOI: http://dx.doi.org/10.3329/jbau.v12i1.21236 J. Bangladesh Agril. Univ. 12(1): 29-36, June 2014

scholarly journals The Genome-Sequenced Variant of Campylobacter jejuni NCTC 11168 and the Original Clonal Clinical Isolate Differ Markedly in Colonization, Gene Expression, and Virulence-Associated Phenotypes

2004 ◽  
Vol 186 (2) ◽  
pp. 503-517 ◽  
Author(s):  
Erin C. Gaynor ◽  
Shaun Cawthraw ◽  
Georgina Manning ◽  
Joanna K. MacKichan ◽  
Stanley Falkow ◽  
...  
Keyword(s):  
Clinical Isolate ◽  
Campylobacter Jejuni ◽  
Transcriptional Profiling ◽  
Bacterial Pathogen ◽  
Gene Families ◽  
Subtractive Hybridization ◽  
Laboratory Culture ◽  
Phenotypic Differences ◽  
Culture Cells ◽  
Colonization Potential

ABSTRACT The genome sequence of the enteric bacterial pathogen Campylobacter jejuni NCTC 11168 (11168-GS) was published in 2000, providing a valuable resource for the identification of C. jejuni-specific colonization and virulence factors. Surprisingly, the 11168-GS clone was subsequently found to colonize 1-day-old chicks following oral challenge very poorly compared to other strains. In contrast, we have found that the original clinical isolate from which 11168-GS was derived, 11168-O, is an excellent colonizer of chicks. Other marked phenotypic differences were also identified: 11168-O invaded and translocated through tissue culture cells far more efficiently and rapidly than 11168-GS, was significantly more motile, and displayed a different morphology. Serotyping, multiple high-resolution molecular genotyping procedures, and subtractive hybridization did not yield observable genetic differences between the variants, suggesting that they are clonal. However, microarray transcriptional profiling of these strains under microaerobic and severely oxygen-limited conditions revealed dramatic expression differences for several gene families. Many of the differences were in respiration and metabolism genes and operons, suggesting that adaptation to different oxygen tensions may influence colonization potential. This correlates biologically with our observation that anaerobically priming 11168-GS or aerobically passaging 11168-O caused an increase or decrease, respectively, in colonization compared to the parent strain. Expression differences were also observed for several flagellar genes and other less well-characterized genes that may participate in motility. Targeted sequencing of the sigma factors revealed specific DNA differences undetected by the other genomic methods. These observations highlight the capacity of C. jejuni to adapt to multiple environmental niches, the likelihood that this adaptation involves genetic evolution, and provides the first whole-genome molecular exploration of the effect of laboratory culture and storage on colonization and virulence properties of this pathogen.

Guihaia heterosquama, a new species of coryphoid palm (Arecaceae) from Chongqing, China

Phytotaxa ◽  
2019 ◽  
Vol 405 (5) ◽  
pp. 248-254
Author(s):  
XIANYUAN LI ◽  
HUI PENG ◽  
XI HE ◽  
ZHINENG LI ◽  
DI WU
Keyword(s):  
New Species ◽  
Leaf Blade ◽  
Male Flower ◽  
Leaf Sheath ◽  
Flower Structure ◽  
A New Species

Guihaia heterosquama X. Y. Li, a new species from Chongqing, China, is described and illustrated. Guihaia heterosquama is similar to G. grossifibrosa and G. argyrata both in the shape of the leaf blade and flower structure, but it can be easily distinguished by its leaf scales, leaf sheath fibers and hastula. Notably, Guihaia heterosquama differs from all the reported species of Guihaia by the presence of a distinct pistillode in the male flower.

Rumen degradation of straw 9. Effect of cellulase and ammonia treatment on different varieties of rice straws and their botanical fractions

1990 ◽  
Vol 50 (2) ◽  
pp. 309-317 ◽  
Author(s):  
Y. Nakashima ◽  
E. R. Ørskov
Keyword(s):  
Propionic Acid ◽  
Rice Straw ◽  
Leaf Blade ◽  
Soluble Fraction ◽  
Leaf Sheath ◽  
Ammonia Treatment ◽  
Neutral Detergent Fibre ◽  
Rumen Degradation ◽  
Significant Difference ◽  
Acid Detergent Fibre

ABSTRACTThe composition and degradability of four varieties of rice straw were examined. The varieties were tall or short and early or late maturing. The straws and their botanical parts (leaf blade plus leaf sheath, internode, node and chaff) varied in acid-detergent fibre, ash and silica contents, but not in nitrogen and neutral-detergent fibre. There were some trends but no significant difference in proportions of parts between varieties. Milled samples of whole straw and its parts were either untreated, treated with a cellulase preparation plus propionic acid, treated with ammonia, or treated with cellulase then ammonia. Rumen degradability was measured by incubating the samples in polyester bags suspended in the rumen of sheep. The soluble fraction and potential degradability were greater in untreated short and early than in tall and late varieties, but rates of degradation did not vary significantly. Internode was more degradable than leaf. Cellulase and/or ammonia treatments increased the soluble fraction, especially in tall and late varieties, and increased potential degradabiiity except in internode. Degradability correlated positively with ash and silica contents.

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