scholarly journals Submergence Gene Sub1A Transfer into Drought-Tolerant japonica Rice DT3 Using Marker-Assisted Selection

2021 ◽  
Vol 22 (24) ◽  
pp. 13365
Author(s):  
Yong-Pei Wu ◽  
Shu-Mei Wang ◽  
Yu-Chi Chang ◽  
Chi Ho ◽  
Yu-Chia Hsu
Keyword(s):  
Good Yield ◽  
Grain Quality ◽  
Agronomic Traits ◽  
Eating Quality ◽  
Recurrent Parent ◽  
High Survival ◽  
Japonica Rice ◽  
Rice Varieties ◽  
Drought Tolerant ◽  
Submergence Stress

Flash flooding is a major environmental stressor affecting rice production worldwide. DT3 is a drought-tolerant, recurrent parent with a good yield, edible quality, and agronomic traits akin to those of an elite Taiwanese variety, Taiken9 (TK9). Progenies carrying Sub1A can enhance submergence stress tolerance and can be selected using the marker-assisted backcross (MAB) breeding method. For foreground selection, Sub1A and SubAB1 were utilized as markers on the BC2F1, BC3F1, and BC3F2 generations to select the submergence-tolerant gene, Sub1A. Background selection was performed in the Sub1A-BC3F2 genotypes, and the percentages of recurrent parent recovery within individuals ranged from 84.7–99.55%. BC3F3 genotypes (N = 100) were evaluated for agronomic traits, yield, and eating quality. Four of the eleven BC3F4 lines showed good yield, yield component, grain, and eating quality. Four BC3F4 lines, SU39, SU40, SU89, and SU92, exhibited desirable agronomic traits, including grain quality and palatability, consistent with those of DT3. These genotypes displayed a high survival rate between 92 and 96%, much better compared with DT3 with 64%, and demonstrated better drought tolerance compared to IR64 and IR96321-345-240. This study provides an efficient and precise MAB strategy for developing climate-resilient rice varieties with good grain quality for flood-prone regions.

scholarly journals Drought Tolerant near Isogenic Lines (NILs) of Pusa 44 Developed through Marker Assisted Introgression of qDTY2.1 and qDTY3.1 Enhances Yield under Reproductive Stage Drought Stress

Agriculture ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 64
Author(s):  
Priyanka Dwivedi ◽  
Naleeni Ramawat ◽  
Gaurav Dhawan ◽  
Subbaiyan Gopala Krishnan ◽  
Kunnummal Kurungara Vinod ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Grain Quality ◽  
Reproductive Stage ◽  
Recurrent Parent ◽  
Near Isogenic Lines ◽  
Improvement Project ◽  
Isogenic Lines ◽  
Drought Tolerant ◽  
Rice Improvement

Reproductive stage drought stress (RSDS) is detrimental for rice, which affects its productivity as well as grain quality. In the present study, we introgressed two major quantitative trait loci (QTLs), namely, qDTY2.1 and qDTY3.1, governing RSDS tolerance in a popular high yielding non-aromatic rice cultivar, Pusa 44, through marker-assisted backcross breeding (MABB). Pusa 44 is highly sensitive to RSDS, which restricts its cultivation across drought-prone environments. Foreground selection was carried out using markers, RM520 for qDTY3.1 and RM 521 for qDTY2.1. Background selection was achieved with 97 polymorphic SSR markers in tandem with phenotypic selection to achieve faster recurrent parent genome (RPG) recovery. Three successive backcrosses followed by three selfings aided RPG recoveries of 98.6% to 99.4% among 31 near isogenic lines (NILs). Fourteen NILs were found to be significantly superior in yield and grain quality under RSDS with higher drought tolerance efficiency (DTE) than Pusa 44. Among these, the evaluation of two promising NILs in the multilocational trial during Kharif 2019 showed that they were significantly superior to Pusa 44 under reproductive stage drought stress, while performing on par with Pusa 44 under normal irrigated conditions. These di-QTL pyramided drought-tolerant NILs are in the final stages of testing the All India Coordinated Rice Improvement Project varietal trials for cultivar release. Alternately, the elite drought-tolerant Pusa 44 NILs will serve as an invaluable source of drought tolerance in rice improvement.

scholarly journals Breeding of High Cooking and Eating Quality in Rice by Marker-Assisted Backcrossing (MABc) Using KASP Markers

Plants ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 804
Author(s):  
Me-Sun Kim ◽  
Ju-Young Yang ◽  
Ju-Kyung Yu ◽  
Yi Lee ◽  
Yong-Jin Park ◽  
...  
Keyword(s):  
Genetic Background ◽  
Amylose Content ◽  
Yield Potential ◽  
Eating Quality ◽  
Breeding Cycle ◽  
Recurrent Parent ◽  
Rice Varieties ◽  
Breeding Programs ◽  
Genome Wide ◽  
Cooking And Eating Quality

The primary goals of rice breeding programs are grain quality and yield potential improvement. With the high demand for rice varieties of premium cooking and eating quality, we developed low-amylose content breeding lines crossed with Samgwang and Milkyqueen through the marker-assisted backcross (MABc) breeding program. Trait markers of the SSIIIa gene referring to low-amylose content were identified through an SNP mapping activity, and the markers were applied to select favorable lines for a foreground selection. To rapidly recover the genetic background of Samgwang (recurrent parent genome, RPG), 386 genome-wide markers were used to select BC1F1 and BC2F1 individuals. Seven BC2F1 lines with targeted traits were selected, and the genetic background recovery range varied within 97.4–99.1% of RPG. The amylose content of the selected BC2F2 grains ranged from 12.4–16.8%. We demonstrated the MABc using a trait and genome-wide markers, allowing us to efficiently select lines of a target trait and reduce the breeding cycle effectively. In addition, the BC2F2 lines confirmed by molecular markers in this study can be utilized as parental lines for subsequent breeding programs of high-quality rice for cooking and eating.

scholarly journals Yield, Grain Quality and Eating Quality of New and Old Rice Varieties in the Tohoku Region of Japan

2018 ◽  
Vol 87 (1) ◽  
pp. 43-52
Author(s):  
Akira Fukushima ◽  
Hisatoshi Ohta ◽  
Narifumi Yokogami ◽  
Naoto Tsuda
Keyword(s):  
Grain Quality ◽  
Eating Quality ◽  
Rice Varieties

Variation of Yield and Grain Quality by the Inoculation of K1 and K3a Races of Bacterial Blight in Early Maturing japonica Rice Varieties

2012 ◽  
Vol 44 (4) ◽  
pp. 516-525
Author(s):  
Hyun-Su Park ◽  
◽  
Ki-Young Kim ◽  
Mun-Sik Shin ◽  
Tae Hwan Noh ◽  
...  
Keyword(s):  
Bacterial Blight ◽  
Grain Quality ◽  
Japonica Rice ◽  
Rice Varieties ◽  
Early Maturing

scholarly journals Introgression of drought tolerance QTLs through marker assisted backcross breeding in wheat (Triticum aestivum L.)

2020 ◽  
Vol 80 (02) ◽  
Author(s):  
Leena Todkar ◽  
Harikrishna . ◽  
G. P. Singh ◽  
Neelu Jain ◽  
P. K. Singh ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Agronomic Traits ◽  
Wheat Variety ◽  
Triticum Aestivum L ◽  
Recurrent Parent ◽  
Background Selection ◽  
Drought Tolerant ◽  
Backcross Breeding ◽  
Genomic Regions ◽  
Marker Assisted Backcross Breeding

The present study reports the introgression of the genomic regions linked with drought tolerance traits viz., NDVI, staygreen, chlorophyll content/chlorophyll fluorescence and yield from a drought tolerant parent HI1500 in to a popular high yielding but drought susceptible wheat variety GW322 following the marker assisted backcross breeding. Background selection with 109 polymorphic SSR markers accelerated genome recovery of recurrent parent which ranged from 72.14 to 86.9% in BC1F1, 90.33 to 92.02% in BC2F1 and 91.6 to 94.95% with an average of 93.5% in BC2F2 generation. Eighteen homozygous BC2F3 progenies were found to be phenotypically superior for morpho-physiological and agronomic traits over the recurrent parent GW322.

scholarly journals Genome-wide association study for yield and yield related traits under reproductive stage drought in a diverse indica-aus rice panel

2020 ◽  
Author(s):  
Aditi Bhandari ◽  
Nitika Sandhu ◽  
Jérôme Bartholome ◽  
Tuong-Vi Cao-Hamadoun ◽  
Nourollah Ahmadi ◽  
...  
Keyword(s):  
Grain Yield ◽  
Field Experiments ◽  
Genome Wide Association Study ◽  
Agronomic Traits ◽  
Reproductive Stage ◽  
Phenotypic Variance ◽  
Rice Varieties ◽  
Drought Tolerant ◽  
Genome Wide ◽  
Genomic Regions

Abstract Background Reproductive-stage drought stress is a major impediment to rice production in rainfed areas. Conventional and marker-assisted breeding strategies for developing drought-tolerant rice varieties are being optimized by mining and exploiting adaptive traits, genetic diversity; identifying the alleles, and understanding their interactions with genetic backgrounds for their increased contribution to drought tolerance. Field experiments were conducted in this study to identify marker-trait associations (MTAs) involved in response to yield under reproductive-stage (RS) drought. A diverse set of 280 indica-aus accessions was phenotyped for ten agronomic traits including yield and yield-related traits under normal irrigated condition and under two managed reproductive-stage drought environments. The accessions were genotyped with 215,250 single nucleotide polymorphism markers. Results The study identified a total of 219 significant MTAs for 10 traits and candidate gene analysis within a 200kb window centred from GWAS identified SNP peaks detected these MTAs within/ in close proximity to 38 genes, 4 earlier reported major grain yield QTLs and 6 novel QTLs for 7 traits out of the 10. The significant MTAs were mainly located on chromosomes 1, 2, 5, 6, 9, 11 and 12 and the percent phenotypic variance captured for these traits ranged from 5 to 88%. The significant positive correlation of grain yield with yield-related and other agronomic traits except for flowering time, observed under different environments point towards their contribution in improving rice yield under drought. Seven promising accessions were identified for use in future genomics-assisted breeding programs targeting grain yield improvement under drought. Conclusion These results provide a promising insight into the complex genetic architecture of grain yield under reproductive-stage drought in different environments. Validation of major genomic regions reported in the study will enable their effectiveness to develop drought-tolerant varieties following marker-assisted selection as well as to identify genes and understanding the associated physiological mechanisms.

scholarly journals Response of U.S. Rice Cultivars Grown under Non-Flooded Irrigation Management

Agronomy ◽  
2019 ◽  
Vol 10 (1) ◽  
pp. 55
Author(s):  
Anna M. McClung ◽  
Jai S. Rohila ◽  
Christopher G. Henry ◽  
Argelia Lorence
Keyword(s):  
Soil Moisture ◽  
Environmental Sustainability ◽  
Agronomic Traits ◽  
Phenotypic Variability ◽  
Irrigation Management ◽  
Field Capacity ◽  
Japonica Rice ◽  
Rice Breeding ◽  
Rice Varieties ◽  
Breeding Programs

Achieving food security along with environmental sustainability requires high yields with reduced demands on irrigation resources for rice production systems. The goal of the present investigation was to identify traits and germplasms for rice breeding programs that target effective grain production (EGP) under non-flooded field systems where the crop can be subjected to intermittent water stress throughout the growing season. A panel of 15 cultivars was evaluated over three years regarding phenological and agronomic traits under four soil moisture levels ranging from field capacity (29% volumetric water content; VWC) to just above the wilting point (16% VWC) using subsurface drip irrigation. An average of 690 ha-mm ha−1 water was applied for the 30% VWC treatment compared to 360 ha-mm ha−1 for the 14% VWC treatment. The average soil moisture content influenced several traits, including grain quality. Regression analysis identified six traits that explained 35% of the phenotypic variability of EGP. Four varieties (PI 312777, Francis, Zhe 733, and Mars) were found possessing significant slopes for 10 or more traits that respond to a range in soil moisture levels, indicating that they may offer promise for future rice breeding programs. Furthermore, based on the contrasting responses of four parent cultivars, two mapping populations were identified as potential genetic resources for identifying new quantitative trait loci/genes for improving EGP of tropical japonica rice varieties.

Utilisation of anther culture in rice (Oryza sativa L.) breeding in Italy

1994 ◽  
Vol 34 (7) ◽  
pp. 911 ◽  
Author(s):  
AM Callegarin ◽  
K Perfanov ◽  
G Dorotea ◽  
G Baldi
Keyword(s):  
Oryza Sativa ◽  
Anther Culture ◽  
Grain Quality ◽  
Agronomic Traits ◽  
Oryza Sativa L ◽  
Market Demand ◽  
Breeding Methods ◽  
Rice Varieties ◽  
Hybrid Lines

Increasing market demand has led to efforts to select for non-sticky, long-grain rice varieties suited to the Italian environment. The variability of recombinant populations derived from crosses between Italian and USA genotypes was exploited. Together with the conventional breeding methods, in vitro anther culture was used to obtain homozygous lines from crosses more quickly. Moreover, hybrid lines were obtained from crosses otherwise impossible to exploit owing to sterility in the F, generation (namely those resulting from crosses involving semi-dwarf USA varieties). Plant regeneration was obtained from 6 F, hybrids whose parents were chosen for their grain quality or their suitability to the Italian environment. About 5500 plantlets were regenerated. Of these, 1000 were albino, and about 50% of the green ones died after transplanting into soil; 65% of the surviving plants were sterile, so about 1000 progeny were obtained (30-445 for each cross). Progeny with desirable characteristics were evaluated for agronomic traits. On the basis of these results, limits and possibilities of anther-culture breeding in rice are discussed.

Insect-proof nets affect paddy field microclimate parameters and grain quality of different japonica rice varieties

2015 ◽  
Vol 18 (2) ◽  
pp. 73-81 ◽  
Author(s):  
Zhi Guo ◽  
Hongjiang Liu ◽  
Haiyan Yuan ◽  
Guoying Yang ◽  
Jianchu Zheng ◽  
...  
Keyword(s):  
Paddy Field ◽  
Grain Quality ◽  
Japonica Rice ◽  
Rice Varieties ◽  
Proof Nets

scholarly journals Genomic Regions Involved in Differences in Eating and Cooking Quality Other than Wx and Alk Genes between indica and japonica Rice Cultivars

Rice ◽  
2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Kiyosumi Hori ◽  
Keitaro Suzuki ◽  
Haruka Ishikawa ◽  
Yasunori Nonoue ◽  
Kazufumi Nagata ◽  
...  
Keyword(s):  
Agronomic Traits ◽  
Heading Date ◽  
Rice Cultivar ◽  
Eating Quality ◽  
Japonica Rice ◽  
Rice Cultivars ◽  
Substitution Lines ◽  
Chromosome Segment Substitution Lines ◽  
Chromosome Segments

Abstract Background In temperate rice cultivation regions, japonica rice cultivars are grown preferentially because consumers deem them to have good eating quality, whereas indica rice cultivars have high grain yields and strong heat tolerance but are considered to have poor eating quality. To mitigate the effects of global warming on rice production, it is important to develop novel rice cultivars with both desirable eating quality and resilience to high temperatures. Eating quality and agronomic traits were evaluated in a reciprocal set of chromosome segment substitution lines derived from crosses between a japonica rice cultivar ‘Koshihikari’ and an indica rice cultivar ‘Takanari’. Results We detected 112 QTLs for amylose and protein contents, whiteness, stickiness, hardness and eating quality of cooked rice grains. Almost of ‘Koshihikari’ chromosome segments consistently improved eating quality. Among detected QTLs, six QTLs on chromosomes 1–5 and 11 were detected that increased whiteness and stickiness of cooked grains or decreased their hardness for 3 years. The QTLs on chromosomes 2–4 were not associated with differences in amylose or protein contents. QTLs on chromosomes 1–5 did not coincide with QTLs for agronomic traits such as heading date, culm length, panicle length, spikelet fertility and grain yield. Genetic effects of the detected QTLs were confirmed in substitution lines carrying chromosome segments from five other indica cultivars in the ‘Koshihikari’ genetic background. Conclusion The detected QTLs were associated with differences in eating quality between indica and japonica rice cultivars. These QTLs appear to be widely distributed among indica cultivars and to be novel genetic factors for eating quality traits because their chromosome regions differed from those of the GBSSI (Wx) and SSIIa (Alk) genes. The detected QTLs would be very useful for improvement of eating quality of indica rice cultivars in breeding programs.

Sign in / Sign up

Export Citation Format

Share Document