scholarly journals Finding Central Vertices and Community Structure via Extended Density Peaks-Based Clustering

Information ◽  
2021 ◽  
Vol 12 (12) ◽  
pp. 501
Author(s):  
Yuanyuan Meng ◽  
Xiyu Liu
Keyword(s):  
Social Networks ◽  
Community Structure ◽  
State Of The Art ◽  
Research Field ◽  
Community Centers ◽  
Density Peaks ◽  
Resolution Limits ◽  
Significant Research ◽  
Connection Coefficient ◽  
Real Community

Community detection is a significant research field of social networks, and modularity is a common method to measure the division of communities in social networks. Many classical algorithms obtain community partition by improving the modularity of the whole network. However, there is still a challenge in community division, which is that the traditional modularity optimization is difficult to avoid resolution limits. To a certain extent, the simple pursuit of improving modularity will cause the division to deviate from the real community structure. To overcome these defects, with the help of clustering ideas, we proposed a method to filter community centers by the relative connection coefficient between vertices, and we analyzed the community structure accordingly. We discuss how to define the relative connection coefficient between vertices, how to select the community centers, and how to divide the remaining vertices. Experiments on both real and synthetic networks demonstrated that our algorithm is effective compared with the state-of-the-art methods.

Identification, Prediction and Data Analysis of Noncoding RNAs: A Review

2019 ◽  
Vol 15 (3) ◽  
pp. 216-230 ◽  
Author(s):  
Abbasali Emamjomeh ◽  
Javad Zahiri ◽  
Mehrdad Asadian ◽  
Mehrdad Behmanesh ◽  
Barat A. Fakheri ◽  
...  
Keyword(s):  
Computational Methods ◽  
State Of The Art ◽  
Noncoding Rnas ◽  
Research Field ◽  
Design Strategies ◽  
Structural Prediction ◽  
Computational Costs ◽  
Cellular Processes ◽  
Laboratory Techniques ◽  
Fast Prediction

Background:Noncoding RNAs (ncRNAs) which play an important role in various cellular processes are important in medicine as well as in drug design strategies. Different studies have shown that ncRNAs are dis-regulated in cancer cells and play an important role in human tumorigenesis. Therefore, it is important to identify and predict such molecules by experimental and computational methods, respectively. However, to avoid expensive experimental methods, computational algorithms have been developed for accurately and fast prediction of ncRNAs.Objective:The aim of this review was to introduce the experimental and computational methods to identify and predict ncRNAs structure. Also, we explained the ncRNA’s roles in cellular processes and drugs design, briefly.Method:In this survey, we will introduce ncRNAs and their roles in biological and medicinal processes. Then, some important laboratory techniques will be studied to identify ncRNAs. Finally, the state-of-the-art models and algorithms will be introduced along with important tools and databases.Results:The results showed that the integration of experimental and computational approaches improves to identify ncRNAs. Moreover, the high accurate databases, algorithms and tools were compared to predict the ncRNAs.Conclusion:ncRNAs prediction is an exciting research field, but there are different difficulties. It requires accurate and reliable algorithms and tools. Also, it should be mentioned that computational costs of such algorithm including running time and usage memory are very important. Finally, some suggestions were presented to improve computational methods of ncRNAs gene and structural prediction.

scholarly journals Multi-hop assortativities for network classification

2018 ◽  
Vol 7 (4) ◽  
pp. 603-622 ◽  
Author(s):  
Leonardo Gutiérrez-Gómez ◽  
Jean-Charles Delvenne
Keyword(s):  
Machine Learning ◽  
Scientific Collaboration ◽  
State Of The Art ◽  
Medical Engineering ◽  
Research Field ◽  
Classification Task ◽  
Collaboration Network ◽  
Structural Patterns ◽  
Art Methods

Abstract Several social, medical, engineering and biological challenges rely on discovering the functionality of networks from their structure and node metadata, when it is available. For example, in chemoinformatics one might want to detect whether a molecule is toxic based on structure and atomic types, or discover the research field of a scientific collaboration network. Existing techniques rely on counting or measuring structural patterns that are known to show large variations from network to network, such as the number of triangles, or the assortativity of node metadata. We introduce the concept of multi-hop assortativity, that captures the similarity of the nodes situated at the extremities of a randomly selected path of a given length. We show that multi-hop assortativity unifies various existing concepts and offers a versatile family of ‘fingerprints’ to characterize networks. These fingerprints allow in turn to recover the functionalities of a network, with the help of the machine learning toolbox. Our method is evaluated empirically on established social and chemoinformatic network benchmarks. Results reveal that our assortativity based features are competitive providing highly accurate results often outperforming state of the art methods for the network classification task.

scholarly journals Emergence and evolution of social networks through exploration of the Adjacent Possible space

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Enrico Ubaldi ◽  
Raffaella Burioni ◽  
Vittorio Loreto ◽  
Francesca Tria
Keyword(s):  
Social Networks ◽  
Community Structure ◽  
Social Interactions ◽  
Clustering Coefficient ◽  
Human Beings ◽  
Broad Distribution ◽  
Phone Calls ◽  
Dynamical Features ◽  
Twitter Users ◽  
American Physical

AbstractThe interactions among human beings represent the backbone of our societies. How people establish new connections and allocate their social interactions among them can reveal a lot of our social organisation. We leverage on a recent mathematical formalisation of the Adjacent Possible space to propose a microscopic model accounting for the growth and dynamics of social networks. At the individual’s level, our model correctly reproduces the rate at which people acquire new acquaintances as well as how they allocate their interactions among existing edges. On the macroscopic side, the model reproduces the key topological and dynamical features of social networks: the broad distribution of degree and activities, the average clustering coefficient and the community structure. The theory is born out in three diverse real-world social networks: the network of mentions between Twitter users, the network of co-authorship of the American Physical Society journals, and a mobile-phone-calls network.

Two Orders of Magnitude Improvement in the Detection Limit of Droplet-Based Micro-Magnetofluidics with Planar Hall Effect Sensors

2021 ◽  
Vol 6 (1) ◽  
pp. 47
Author(s):  
Julian Schütt ◽  
Rico Illing ◽  
Oleksii Volkov ◽  
Tobias Kosub ◽  
Pablo Nicolás Granell ◽  
...  
Keyword(s):  
Detection Limit ◽  
Hall Effect ◽  
State Of The Art ◽  
Limit Of Detection ◽  
Research Field ◽  
High Throughput Analysis ◽  
Planar Hall Effect ◽  
Biologically Relevant ◽  
Sensing Platform ◽  
Order Of Magnitude

The detection, manipulation, and tracking of magnetic nanoparticles is of major importance in the fields of biology, biotechnology, and biomedical applications as labels as well as in drug delivery, (bio-)detection, and tissue engineering. In this regard, the trend goes towards improvements of existing state-of-the-art methodologies in the spirit of timesaving, high-throughput analysis at ultra-low volumes. Here, microfluidics offers vast advantages to address these requirements, as it deals with the control and manipulation of liquids in confined microchannels. This conjunction of microfluidics and magnetism, namely micro-magnetofluidics, is a dynamic research field, which requires novel sensor solutions to boost the detection limit of tiny quantities of magnetized objects. We present a sensing strategy relying on planar Hall effect (PHE) sensors in droplet-based micro-magnetofluidics for the detection of a multiphase liquid flow, i.e., superparamagnetic aqueous droplets in an oil carrier phase. The high resolution of the sensor allows the detection of nanoliter-sized superparamagnetic droplets with a concentration of 0.58 mg cm−3, even when they are only biased in a geomagnetic field. The limit of detection can be boosted another order of magnitude, reaching 0.04 mg cm−³ (1.4 million particles in a single 100 nL droplet) when a magnetic field of 5 mT is applied to bias the droplets. With this performance, our sensing platform outperforms the state-of-the-art solutions in droplet-based micro-magnetofluidics by a factor of 100. This allows us to detect ferrofluid droplets in clinically and biologically relevant concentrations, and even in lower concentrations, without the need of externally applied magnetic fields.

Direction recovery in undirected social networks based on community structure and popularity

2019 ◽  
Vol 473 ◽  
pp. 31-43 ◽  
Author(s):  
Yi-Ming Wen ◽  
Ling Huang ◽  
Chang-Dong Wang ◽  
Kun-Yu Lin
Keyword(s):  
Social Networks ◽  
Community Structure

scholarly journals Visualizations of personal social networks on Facebook and community structure: an exploratory study

2017 ◽  
Author(s):  
Christina Gkini ◽  
Alexios Brailas
Keyword(s):  
Social Networks ◽  
Community Structure ◽  
Single Point ◽  
Community Formation ◽  
Structure Pattern ◽  
Diffusion Of Information ◽  
Qualitative Interpretation ◽  
Network Topologies ◽  
Personal Social Networks ◽  
And Diffusion

We studied the community structure pattern in the visualizations of ten personal social networks on Facebook at a single point in time. It seems to be a strong tendency towards community formation in online personal, social networks: somebody’s friends are usually also friends between them, forming subgroups of more densely connected nodes. Research on community structure in social networks usually focuses on the networks’ statistical properties. There is a need for qualitative studies bridging the gap between network topologies and their sociological implications. To this direction, visual representations of personal networks in social media could be a valuable source of empirical data for qualitative interpretation. Most of the personal social networks’ visualizations in the present study are very highly clustered with densely-knit overlapping subgroups of friends and interconnected between them through wide bridges. This network topology pattern seems to be quite efficient, allowing for a fast spread and diffusion of information across the whole social network.

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