Submarine Geomorphological Features and Their Origins Analyzed from Multibeam Bathymetry Data in the South China Sea

We processed the raw multi-beam bathymetry data acquired in the central and northeastern part of the South China Sea by eliminating noise and abnormal water depth values caused by environmental factors, and a high resolution bathymetric map with a 20-m grid interval was constructed. Various scales of seafloor geomorphological features were identified from the data, including an image of Shenhu canyon, which is located in the northern continental margin of the South China Sea; submarine reticular dunes in the north of the Dongsha atoll; submarine parallel dunes in the northeast of the Dongsha atoll; and several seamounts in the southwest sub-basin and in the east sub-basin. In the processing step, various anomalies in the multi-beam bathymetry data were corrected. The optimal swath filtering and surface filtering methods were chosen for different scales of seafloor topography in order to restore the true geomorphological features. For the large-scale features with abrupt elevation changes, such as seamounts (heights of ~111–778 m) and submarine canyons (incision height of ~90–230 m), we applied swath filtering to remove noise from the full water depth range of the data, and then surface filtering to remove small noises in the local areas. For the reticular dunes and parallel dunes (heights of ~2–32 m), we applied only surface filtering to refine the data. Based on the geometries of the geomorphological features with different scales, the marine hydrodynamic conditions, and the regional structure in the local areas, we propose that the Shenhu submarine canyon was formed by turbidity current erosion during the Sag subsidence and the sediment collapse. The submarine reticular dunes in the north of the Dongsha atoll were built by the multi-direction dominant currents caused by the previously recognised internal solitary waves around the Dongsha atoll. The submarine parallel dunes in the northeast of the Dongsha atoll were built by the repeated washing of sediments with the influence of the tidal currents and internal solitary waves. The conical, linear and irregular seamounts identified from the bathymetry data were formed during the spreading of the southwest sub-basin and the east sub-basin. The identified seamounts in the multi-beam bathymetry data are correlated to deep magmatic activities, the Zhongnan transform fault and the NE-trending faults.

Enhanced diapycnal mixing with polarity-reversing internal solitary waves revealed by seismic reflection data

Shoaling internal solitary waves near the Dongsha Atoll in the South China Sea dissipate their energy and enhance diapycnal mixing, which have an important impact on the oceanic environment and primary productivity. The enhanced diapycnal mixing is patchy and instantaneous. Evaluating its spatiotemporal distribution requires comprehensive observation data. Fortunately, seismic oceanography meets the requirements, thanks to its high spatial resolution and large spatial coverage. In this paper, we studied three internal solitary waves in reversing polarity near the Dongsha Atoll and calculated their spatial distribution of diapycnal diffusivity. Our results show that the average diffusivities along three survey lines are 2 orders of magnitude larger than the open-ocean value. The average diffusivity in internal solitary waves with reversing polarity is 3 times that of the non-polarity reversal region. The diapycnal diffusivity is higher at the front of one internal solitary wave and gradually decreases from shallow to deep water in the vertical direction. Our results also indicate that (1) the enhanced diapycnal diffusivity is related to reflection seismic events, (2) convective instability and shear instability may both contribute to the enhanced diapycnal mixing in the polarity-reversing process, and (3) the difference between our results and Richardson-number-dependent turbulence parameterizations is about 2–3 orders of magnitude, but its vertical distribution is almost the same.

Dongsha Atoll is an important stepping-stone that promotes regional genetic connectivity in the South China Sea

Background Understanding region-wide patterns of larval connectivity and gene flow is crucial for managing and conserving marine biodiversity. Dongsha Atoll National Park (DANP), located in the northern South China Sea (SCS), was established in 2007 to study and conserve this diverse and remote coral atoll. However, the role of Dongsha Atoll in connectivity throughout the SCS is seldom studied. In this study, we aim to evaluate the role of DANP in conserving regional marine biodiversity. Methods In total, 206 samples across nine marine species were collected and sequenced from Dongsha Atoll, and these data were combined with available sequence data from each of these nine species archived in the Genomic Observatories Metadatabase (GEOME). Together, these data provide the most extensive population genetic analysis of a single marine protected area. We evaluate metapopulation structure for each species by using a coalescent sampler, selecting among panmixia, stepping-stone, and island models of connectivity in a likelihood-based framework. We then completed a heuristic graph theoretical analysis based on maximum dispersal distance to get a sense of Dongsha’s centrality within the SCS. Results Our dataset yielded 111 unique haplotypes across all taxa at DANP, 58% of which were not sampled elsewhere. Analysis of metapopulation structure showed that five out of nine species have strong regional connectivity across the SCS such that their gene pools are effectively panmictic (mean pelagic larval duration (PLD) = 78 days, sd = 60 days); while four species have stepping-stone metapopulation structure, indicating that larvae are exchanged primarily between nearby populations (mean PLD = 37 days, sd = 15 days). For all but one species, Dongsha was ranked within the top 15 out of 115 large reefs in the South China Sea for betweenness centrality. Thus, for most species, Dongsha Atoll provides an essential link for maintaining stepping-stone gene flow across the SCS. Conclusions This multispecies study provides the most comprehensive examination of the role of Dongsha Atoll in marine connectivity in the South China Sea to date. Combining new and existing population genetic data for nine coral reef species in the region with a graph theoretical analysis, this study provides evidence that Dongsha Atoll is an important hub for sustaining connectivity for the majority of coral-reef species in the region.

Enhanced diapycnal mixing by polarity-reversing internal solitary waves in the South China Sea

Shoaling internal solitary waves near the Dongsha Atoll in the South China Sea dissipate their energy and thus enhance diapycnal mixing, which have an important impact on the oceanic environment and primary productivity. The enhanced diapycnal mixing is patchy and instantaneous. Evaluating its spatiotemporal distribution requires comprehensive observation data. Fortunately, seismic oceanography meets the requirements, thanks to its high spatial resolution and large spatial range. In this paper, we studied three internal solitary waves in reversing polarity near the Dongsha Atoll, and calculated the spatial distribution of resultant diapycnal diffusivity. Our results show that the average diffusivities along three survey lines are two orders of magnitude larger than the open-ocean value. The average diffusivity in the internal solitary wave with reversing polarity is three times that of the non-polarity-reversal region. The diapycnal diffusivity is higher at the front of one internal solitary wave, and gradually decreases from shallow to deep water in the vertical direction. Our results also indicates that (1) the enhanced diapycnal diffusivity is related to reflection seismic events; (2) convective instability and shear instability may both contribute to the enhanced diapycnal mixing in the polarity-reversing process; and (3) the difference between our and previous diffusivity profiles is about 2–3 orders of magnitude, but their vertical distribution is almost the same.

The standing stock and CaCO3 contribution of Halimeda macroloba in the tropical seagrass-dominated ecosystem in Dongsha Island, the main island of Dongsha Atoll, South China Sea

Calcareous green alga in the genus Halimeda are important contributors to the marine carbonate budget. Dongsha Island is located in the northernmost South China Sea and is a seagrass-dominated ecosystem with intermixed Halimeda macroloba patches, making it an excellent system to better examine the extent of carbonate contribution by H. macroloba in such an ecosystem. To this end, we examined the standing stock and actual CaCO3 contribution of H. macroloba in the seagrass-dominated ecosystem (herein Dongsha Island) and compared them with those in Halimeda-dominated ecosystems. The density, growth rate, calcification rate and CaCO3 content of H. macroloba at four life stages were investigated. The mean density of H. macroloba was around 8.82 ± 1.57 thalli m−2 and the estimated standing stock was 61,740 to 72,730 thalli. Thalli produced 1 to 2 new segments day−1, giving a growth rate of 0.003 ± 0.001 g dry weight thallus−1 day−1. Calculated algal biomass and annual areal production were 0.03 g m−2 and 9.66 g m−2 year−1. In each square metre of this area, H. macroloba produced 8.82 to 17.64 new segments day−1, accumulating 0.002 ± 0.001 g CaCO3 thallus−1 day−1 or around 6.44 g CaCO3 m−2 year−1. Mean CaCO3 content was 0.32 ± 0.05 g thallus−1. As expected, the growth rate and CaCO3 production of H. macroloba in Dongsha Island were lower than in other studies from Halimeda tropical ecosystems. Overall, this work provides the baseline of carbonate production of H. macroloba in Dongsha Island and relevant systems where the ecosystem is dominated by seagrasses.

The Probability of an Unrecoverable Coral Community in Dongsha Atoll Marine National Park Due to Recurrent Disturbances

In recent decades, coral reefs worldwide have been impacted annually by climate change and anthropogenic impacts. Marine parks are utilized to protect coral reef ecosystems and to ensure it is in sustainable use. In the present study, a 15-year change in coverage and composition of a hard coral community at Dongsha Atoll Marine National Park (DAMNP) was examined from 2005 to 2019. The reef has experienced several disturbances, including 11 typhoons and six coral bleaching events. A 34.39% decline in coral coverage had been recorded over the past 15 years in response to multiple and recurrent natural disturbances. The coral communities and functional ecology of the Dongsha Atoll changed during this period. The average dissimilarities in coral communities ranged from 55.38 to 59.02%. The dramatic decrease in the abundance of branching corals in addition to a slight increase in massive and encrusting corals suggest the habitat has simplified. The degraded coral reef communities represent a low resilience ecosystem, even though the DAMNP has been established. Without effective management, the coral reef ecosystem of the Dongsha Atoll may not persist due to repeated impacts from recurrent disturbances.

Study on Sedimentary Records of Paleoclimate and Paleoenvironmental Evolution of the Dongsha Atoll of South China Sea in Recent 70 Thousand Years

The Dongsha Atoll of South China Sea are located on the western reef terrace of Dongsha Atoll, where a large amount of terrigenous clastic materials and marine biomass are accumulated, which play an important role in the global material cycles. In recent years, the water level in this area has been on the decrease along with the frequent occurrence of floods, red tides, low-oxygen conditions and warmer waters as a result of worsening global ecology. In this paper, accelerated mass spectrometer (AMS) 14C was used to analyse the sediments in Dongsha Atoll of South China Sea, and studied the organic matter deposition in this area in the past 70,000 years combined with sediment grain size, geochemistry and other indicators, which revealed the influence of paleoclimate environment and climate change on the development of this area. The results showed that the environment and climate are essential to the distribution of particles, which can be divided into three layers from bottom to top, i.e., calcium-rich layer, organic matter layer and fine-grained sediment layer. Al2O3, K2O, TFe2O3 and MgO contribute 58.84% to the total variance, indicating that the composition plays a decisive role in the content of major elements in the region. Turbidity sediments have been widely distributed in different areas of the region since last glacial period, among which turbidity occurred most frequently in the period 200,000 years ago when the sea level was relatively low. This study provided a theoretical basis for the evolution of climate and environment in the South China Sea.