scholarly journals Properties of Degradable Polyhydroxyalkanoates (PHAs) Synthesized by a New Strain, Cupriavidus necator IBP/SFU-1, from Various Carbon Sources

Polymers ◽  
2021 ◽  
Vol 13 (18) ◽  
pp. 3142
Author(s):  
Natalia O. Zhila ◽  
Kristina Yu. Sapozhnikova ◽  
Evgeniy G. Kiselev ◽  
Alexander D. Vasiliev ◽  
Ivan V. Nemtsev ◽  
...  
Keyword(s):  
Molecular Weight ◽  
Oleic Acid ◽  
Carbon Source ◽  
Palm Oil ◽  
Carbon Sources ◽  
Growth Conditions ◽  
Cupriavidus Necator ◽  
Degree Of Crystallinity ◽  
Plant Oils ◽  
Molecular Weights

The bacterial strain isolated from soil was identified as Cupriavidus necator IBP/SFU-1 and investigated as a PHA producer. The strain was found to be able to grow and synthesize PHAs under autotrophic conditions and showed a broad organotrophic potential towards different carbon sources: sugars, glycerol, fatty acids, and plant oils. The highest cell concentrations (7–8 g/L) and PHA contents were produced from oleic acid (78%), fructose, glucose, and palm oil (over 80%). The type of the carbon source influenced the PHA chemical composition and properties: when grown on oleic acid, the strain synthesized the P(3HB-co-3HV) copolymer; on plant oils, the P(3HB-co-3HV-co-3HHx) terpolymer, and on the other substrates, the P(3HB) homopolymer. The type of the carbon source influenced molecular-weight properties of PHAs: P(3HB) synthesized under autotrophic growth conditions, from CO2, had the highest number-average (290 ± 15 kDa) and weight-average (850 ± 25 kDa) molecular weights and the lowest polydispersity (2.9 ± 0.2); polymers synthesized from organic carbon sources showed increased polydispersity and reduced molecular weight. The carbon source was not found to affect the degree of crystallinity and thermal properties of the PHAs. The type of the carbon source determined not only PHA composition and molecular weight but also surface microstructure and porosity of the polymer films. The new strain can be recommended as a promising P(3HB) producer from palm oil, oleic acid, and sugars (fructose and glucose) and as a producer of P(3HB-co-3HV) from oleic acid and P(3HB-co-3HV-co-3HHx) from palm oil.

scholarly journals Synthesis of Polyhydroxyalkanoates from Oleic Acid by Cupriavidus necator B-10646

2020 ◽  
pp. 208-217
Author(s):  
Natalia O. Zhila ◽  
Galina S. Kalacheva ◽  
Evgeniy G. Kiselev ◽  
Tatiana G. Volova
Keyword(s):  
Fatty Acids ◽  
Oleic Acid ◽  
Fatty Acid Methyl Esters ◽  
Methyl Esters ◽  
Maximum Yield ◽  
Carbon Sources ◽  
Gel Permeation Chromatography ◽  
Cupriavidus Necator ◽  
Molecular Weights ◽  
Acid Methyl

Polyhydroxyalkanoates (PHAs) are polymers of hydroxy derived fatty acids synthesized by various organisms. These polymers can be effectively used as a biocompatible and biodegradable alternative to the chemically synthesized plastic. PHA cost, however, still limits the increase in PHA production. One of the ways to reduce PHA cost is to use inexpensive carbon sources such as fatty acids. The aim of this work was to study the effect of various concentrations of oleic acid (5-50 g/L) on the growth of the Cupriavidus necator B-10646 bacterium, polymer synthesis and properties. Cells were grown for 48 h in Schlegel mineral medium at 30°C and 200 rpm on an incubator shaker. The content and the composition of the polymer were determined by chromatography of fatty acid methyl esters using a chromatographymass spectrometer. The molecular weight distribution of the polymer was determined using gel permeation chromatography. Thermal analysis was performed using a differential scanning calorimeter. The maximum yield of biomass (6.4-6.7 g/L) and the highest polymer content (64- 71% of the weight of dry biomass) were obtained from 10-20 g/L of oleic acid after 48 hours of cultivation. In addition to 3-hydroxybutyrate, which is the dominant monomer (more than 98 mol.%), 3-hydroxyvalerate (0.7-1.7 mol.%) and 3-hydroxyhexanoate (0.1-0.4 mol.%) were identified in the polymer synthesized by the bacterium. As the concentration of oleic acid was increased, both the weight average and the number average molecular weights decreased (from 803 to 381 kDa and from 292 to 94 kDa, respectively) but polydispersity of the polymers increased (from 2.8 to 4.1). The results obtained in the present study provide the basis for the next stage of scaling up the process of PHA synthesis from oleic acid

scholarly journals Screening of local wild-type Xanthomonas spp. for xanthan biosynthesis using media with different carbon sources

2021 ◽  
Vol 26 (4) ◽  
pp. 2800-2807
Author(s):  
IDA ZAHOVIĆ ◽  
JELENA DODIĆ ◽  
SINIŠA MARKOV ◽  
JOVANA GRAHOVAC ◽  
MILA GRAHOVAC ◽  
...  
Keyword(s):  
Molecular Weight ◽  
Carbon Source ◽  
Carbon Sources ◽  
Wild Type ◽  
Biotechnological Production ◽  
Aerobic Conditions ◽  
Pepper Leaves ◽  
Synthetic Media ◽  
Selection Of

In this study the screening of different Xanthomonas strains, isolated from infected crucifers and pepper leaves, for xanthan biosynthesis on semi-synthetic media containing different carbon sources was performed. The success of xanthan biosynthesis was estimated based on xanthan concentration in media and its molecular weight. Glucose and glycerol were investigated as carbon sources in a quantity of 20.0 g/L. Xanthan biosynthesis by different Xanthomonas isolates on two different cultivation media was carried out in Erlenmeyer flasks under aerobic conditions for 168 h. According to the obtained results selection of the carbon source, producing strain and their combination have a statistically significant effect on xanthan quantity and quality. The results obtained in this study indicate that local wild-type Xanthomonas strains isolated from pepper leaves have a great potential for application in biotechnological production of good-quality xanthan on glycerol-based media.

Nitrate removal using Brevundimonas diminuta MTCC 8486 from ground water

2009 ◽  
Vol 60 (2) ◽  
pp. 517-524 ◽  
Author(s):  
S. Kavitha ◽  
R. Selvakumar ◽  
M. Sathishkumar ◽  
K. Swaminathan ◽  
P. Lakshmanaperumalsamy ◽  
...  
Keyword(s):  
Carbon Source ◽  
Ground Water ◽  
Nitrate Removal ◽  
Carbon Sources ◽  
Treatment Plant ◽  
Growth Conditions ◽  
Pilot Scale ◽  
Biological Removal ◽  
Treatment Processes ◽  
Brevundimonas Diminuta

Brevundimonas diminuta MTCC 8486, isolated from marine soil of coastal area of Trivandrum, Kerala, was used for biological removal of nitrate from ground water collected from Kar village of Pali district, Rajasthan. The organism was found to be resistance for nitrate up to 10,000 mg L−1. The optimum growth conditions for biological removal of nitrate were established in batch culture. The effect of carbon sources on nitrate removal was investigated using mineral salt medium (MSM) containing 500 mg L−1 of nitrate to select the most effective carbon source. Among glucose and starch as carbon source, glucose at 1% concentration increased the growth (182±8.24 × 104 CFU mL−1) and induced maximum nitrate reduction (86.4%) at 72 h. The ground water collected from Kar village, Pali district of Rajasthan containing 460±5.92 mg L−1 of nitrate was subjected to three different treatment processes in pilot scale (T1 to T3). Higher removal of nitrate was observed in T2 process (88%) supplemented with 1% glucose. The system was scaled up to 10 L pilot scale treatment plant. At 72 h the nitrate removal was observed to be 95% in pilot scale plant. The residual nitrate level (23±0.41 mg L−1) in pilot scale treatment process was found to be below the permissible limit of WHO.

ABF1 is a phosphoprotein and plays a role in carbon source control of COX6 transcription in Saccharomyces cerevisiae

1992 ◽  
Vol 12 (9) ◽  
pp. 4197-4208
Author(s):  
S Silve ◽  
P R Rhode ◽  
B Coll ◽  
J Campbell ◽  
R O Poyton
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Carbon Source ◽  
Glucose Repression ◽  
Carbon Sources ◽  
Growth Conditions ◽  
Source Control ◽  
Specific Target Gene ◽  
Phosphorylation Pattern ◽  
Nonfermentable Carbon Source ◽  
In Cells

Previously, we have shown that the Saccharomyces cerevisiae DNA-binding protein ABF1 exists in at least two different electrophoretic forms (K. S. Sweder, P. R. Rhode, and J. L. Campbell, J. Biol. Chem. 263: 17270-17277, 1988). In this report, we show that these forms represent different states of phosphorylation of ABF1 and that at least four different phosphorylation states can be resolved electrophoretically. The ratios of these states to one another differ according to growth conditions and carbon source. Phosphorylation of ABF1 is therefore a regulated process. In nitrogen-starved cells or in cells grown on nonfermentable carbon sources (e.g., lactate), phosphorylated forms predominate, while in cells grown on fermentable carbon sources (e.g., glucose), dephosphorylated forms are enriched. The phosphorylation pattern is affected by mutations in the SNF1-SSN6 pathway, which is involved in glucose repression-depression. Whereas a functional SNF1 gene, which encodes a protein kinase, is not required for the phosphorylation of ABF1, a functional SSN6 gene is required for itsd ephosphorylation. The phosphorylation patterns that we have observed correlate with the regulation of a specific target gene, COX6, which encodes subunit VI of cytochrome c oxidase. Transcription of COX6 is repressed by growth in medium containing a fermentable carbon source and is derepressed by growth in medium containing a nonfermentable carbon source. COX6 repression-derepression is under the control of the SNF1-SSN6 pathway. This carbon source regulation is exerted through domain 1, a region of the upstream activation sequence UAS6 that binds ABF1 (J. D. Trawick, N. Kraut, F. Simon, and R. O. Poyton, Mol. Cell Biol. 12:2302-2314, 1992). We show that the greater the phosphorylation of ABF1, the greater the transcription of COX6. Furthermore, the ABF1-containing protein-DNA complexes formed at domain 1 differ according to the phosphorylation state of ABF1 and the carbon source on which the cells were grown. From these findings, we propose that the phosphorylation of ABF1 is involved in glucose repression-derepression of COX6 transcription.

Synthesis of Polyhydroxyalkanoates from Waste Frying Oil by Cupriavidus necator

2015 ◽  
Vol 768 ◽  
pp. 124-131
Author(s):  
Lian Hai Ren ◽  
Hui Liu ◽  
Pan Wang
Keyword(s):  
Carbon Source ◽  
Incubation Time ◽  
Maximum Concentration ◽  
Ralstonia Eutropha ◽  
Growth Conditions ◽  
Frying Oil ◽  
Cupriavidus Necator ◽  
Optimal Conditions ◽  
Waste Frying Oil ◽  
Pha Production

Waste frying oil is abundant and can be used as a cheaper carbon source in PHA production. The utilization of waste frying oil for production of PHA not only enhances the economics of such products,but also provides with a strategy to overcome disposal problems. In this study, the waste frying oil is used as the carbon source for the synthesis of PHA by Cupriavidus necator (formerly known as Ralstonia eutropha) to find out the best growth conditions in order to provides the basis for producing PHA in industry. The results showed that the optimal conditions for production of PHA was at the temperature of 25°C, pH 7, C/N ratio (w/w) 20:0.75 and incubation time 72h. The maximum concentration of PHA was obtained as 7.04g/L.

scholarly journals The Defect in Transcription-Coupled Repair Displayed by a Saccharomyces cerevisiae rad26 Mutant Is Dependent on Carbon Source and Is Not Associated With a Lack of Transcription

Genetics ◽  
2001 ◽  
Vol 158 (3) ◽  
pp. 989-997
Author(s):  
Miriam Bucheli ◽  
Lori Lommel ◽  
Kevin Sweder
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Dna Damage ◽  
Carbon Source ◽  
Excision Repair ◽  
Carbon Sources ◽  
Repair Process ◽  
Growth Conditions ◽  
Nucleotide Excision ◽  
Evolutionarily Conserved ◽  
Transcription Activators

Abstract Nucleotide excision repair (NER) is an evolutionarily conserved pathway that removes DNA damage induced by ultraviolet irradiation and various chemical agents that cause bulky adducts. Two subpathways within NER remove damage from the genome overall or the transcribed strands of transcribing genes (TCR). TCR is a faster repair process than overall genomic repair and has been thought to require the RAD26 gene in Saccharomyces cerevisiae. Rad26 is a member of the SWI/SNF family of proteins that either disrupt chromatin or facilitate interactions between the RNA Pol II and transcription activators. SWI/SNF proteins are required for the expression or repression of a diverse set of genes, many of which are differentially transcribed in response to particular carbon sources. The remodeling of chromatin by Rad26 could affect transcription and/or TCR following formation of DNA damage and other stress-inducing conditions. We speculate that another factor(s) can substitute for Rad26 under particular growth conditions. We therefore measured the level of repair and transcription in two different carbon sources and found that the defect in the rad26 mutant for TCR was dependent on the type of carbon source. Furthermore, TCR did not correlate with transcription rate, suggesting that disruption of RAD26 leads to a specific defect in DNA repair and not transcription.

scholarly journals Influence of Different Carbohydrates on Flavonoid Accumulation in Hairy Root Cultures of Scutellaria baicalensis

2016 ◽  
Vol 11 (6) ◽  
pp. 1934578X1601100 ◽  
Author(s):  
Chang Ha Park ◽  
Young Seon Kim ◽  
Xiaohua Li ◽  
Haeng Hoon Kim ◽  
Mariadhas Valan Arasu ◽  
...  
Keyword(s):  
Carbon Source ◽  
Hairy Root ◽  
Carbon Sources ◽  
Optimal Growth ◽  
Growth Conditions ◽  
Scutellaria Baicalensis ◽  
Hairy Root Cultures ◽  
Root Cultures ◽  
Carbohydrate Source ◽  
Half Strength

Carbohydrate sources play important roles in energy and growth of plants. Therefore, in this study, we investigated the optimal carbohydrate source in hairy root cultures (HRCs) of Scutellaria baicalensis infected with Agrobacterium rhizogenes strain R1000. The hairy roots were cultured in half-strength B5 liquid medium supplemented with seven different carbohydrates sources (sucrose, fructose, glucose, galactose, sorbitol, mannitol and maltose), each at a concentration of 100 mM, in order to identify the best carbon sources for the production of major flavones, such as wogonin, baicalin and baicalein. Sucrose, galactose and fructose markedly influenced the production of major flavones and were therefore chosen for subsequent experiments. HRC growth and flavone accumulation were examined following culture with 30, 100 and 150 mM sucrose, galactose and fructose, respectively. From these data, 150 mM sucrose was found to be the optimal carbon source for the enhancement of baicalein production and growth of S. baicalensis HRCs. Fructose caused the greatest increase in baicalin accumulation. Additionally, galactose was the optimal carbon source for wogonin production. These results provide important insights into the optimal growth conditions, particularly the appropriate carbohydrate source, for S. baicalensis.

scholarly journals Biosynthesis of Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) by Cupriavidus necator B-10646 from Mixtures of Oleic Acid and 3-Hydroxyvalerate Precursors

2020 ◽  
pp. 1-11
Author(s):  
Natalia O. Zhila ◽  
Galina S. Kalacheva ◽  
Viktoriya V. Fokht ◽  
Svetlana S. Bubnova ◽  
Tatiana G. Volova
Keyword(s):  
Fatty Acids ◽  
Oleic Acid ◽  
Methyl Esters ◽  
Average Molecular Weight ◽  
Carbon Sources ◽  
Cupriavidus Necator ◽  
High Price ◽  
Bacterial Cells ◽  
Intracellular Lipids ◽  
Pha Copolymers

Polyhydroxyalkanoates have attracted much attention as biodegradable alternative to petroleum-based synthetic plastics. Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [P(3HB-co-3HV)] copolymer is one of the best characterized PHA copolymers because of its high commercial potential. However, commercial use of PHAs has been limited by their high price. One approach to reducing the cost of PHA production is to use inexpensive carbon sources (fatty acids, plant oils, etc.). The aim of this work was to study synthesis of P(3HB-co-3HV) by the Cupriavidus necator B-10646 bacterium grown on oleic acid and different biochemical precursors of 3HV. Bacterial cells were grown for 72 h at 30°C and 200 rpm on an incubator shaker. Salts of propionic or valeric acids were used as precursors of 3HV. The content and the composition of the polymer were determined by gas chromatography of fatty acid methyl esters. Lipids and polymer were extracted from biomass using the method of Folch. The addition of potassium propionate and valerate did not inhibit bacterial growth and polymer synthesis, the cell concentration and polymer content reaching 9.3-9.5 g/L and 80-83%, respectively. The addition of potassium valerate or propionate led to the synthesis of (P(3HB-co-3HV)) copolymer containing 21.2 and 14.3 mol% of 3HV, respectively. The number average molecular weight (Mn) of the polymer synthesized by the bacterium on oleic acid alone was 220 kDa; the polydispersity of the polymer was 3.5. The polymer synthesized in the presence of potassium valerate and propionate was characterized by a lower Mn (156-178 kDa) and a higher polydispersity of the polymer (4.4-4.9). The main fatty acids (FA) of intracellular lipids were oleic (33.26% of the total FA) and palmitic acid (27.48% of the total FA). The addition of potassium propionate or valerate did not cause any significant changes in the composition of the FA of intracellular lipids of the strain studied. This study demonstrates the ability of C. necator B-10646 to synthesize P(3HB-co-3HV) from mixtures of oleic acid and 3HV precursors. The data obtained can be used to develop and implement an economically feasible process of the P(3HB-co-3HV) production

scholarly journals Regulation of RNA polymerase III transcription by Maf1 protein.

2008 ◽  
Vol 55 (2) ◽  
pp. 215-225 ◽  
Author(s):  
Małgorzata Cieśla ◽  
Magdalena Boguta
Keyword(s):  
Carbon Source ◽  
Rna Polymerase Iii ◽  
Carbon Sources ◽  
Physiological Role ◽  
Growth Conditions ◽  
Nutrient Sensing ◽  
Yeast Viability ◽  
Polymerase Iii ◽  
Nonfermentable Carbon Source ◽  
Pol Iii

Maf1 was the first protein discovered to regulate polymerase III RNA in yeast and because it is evolutionarily conserved, a Maf1 ortholog also serves to restrain transcription in mouse and human cells. Understanding the mechanism of the regulation has been made possible by recent studies showing that Maf1 is a nuclear/cytoplasmic protein whose subcellular distribution and hence negative regulation of Pol III transcription is mediated by the nutrient-sensing signaling pathways, TOR and RAS. Under stress conditions and during growth in a nonfermentable carbon source Maf1 is dephosphorylated and imported to the nucleus. In its non-phosphorylated form, Maf1 interacts with the polymerase III transcription machinery. Phosphorylation serves to locate Maf1 to the cytoplasm under favorable growth conditions, thereby preventing it from non-negatively regulating polymerase III when high levels of tRNA transcription are required. Relocation of Maf1 to the cytoplasm is dependent on Msn5, a carrier responsible for export of several other phosphoproteins out of the nucleus. The absence of Maf1-mediated control of tRNA synthesis impairs yeast viability in nonfermentable carbon sources. Moreover, in cells grown in a nonfermentable carbon source, Maf1 regulates the levels of different tRNAs to various extents. This differential regulation may contribute to the physiological role of Maf1.

scholarly journals ABF1 is a phosphoprotein and plays a role in carbon source control of COX6 transcription in Saccharomyces cerevisiae.

1992 ◽  
Vol 12 (9) ◽  
pp. 4197-4208 ◽  
Author(s):  
S Silve ◽  
P R Rhode ◽  
B Coll ◽  
J Campbell ◽  
R O Poyton
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Carbon Source ◽  
Glucose Repression ◽  
Carbon Sources ◽  
Growth Conditions ◽  
Source Control ◽  
Specific Target Gene ◽  
Phosphorylation Pattern ◽  
Nonfermentable Carbon Source ◽  
In Cells

Previously, we have shown that the Saccharomyces cerevisiae DNA-binding protein ABF1 exists in at least two different electrophoretic forms (K. S. Sweder, P. R. Rhode, and J. L. Campbell, J. Biol. Chem. 263: 17270-17277, 1988). In this report, we show that these forms represent different states of phosphorylation of ABF1 and that at least four different phosphorylation states can be resolved electrophoretically. The ratios of these states to one another differ according to growth conditions and carbon source. Phosphorylation of ABF1 is therefore a regulated process. In nitrogen-starved cells or in cells grown on nonfermentable carbon sources (e.g., lactate), phosphorylated forms predominate, while in cells grown on fermentable carbon sources (e.g., glucose), dephosphorylated forms are enriched. The phosphorylation pattern is affected by mutations in the SNF1-SSN6 pathway, which is involved in glucose repression-depression. Whereas a functional SNF1 gene, which encodes a protein kinase, is not required for the phosphorylation of ABF1, a functional SSN6 gene is required for itsd ephosphorylation. The phosphorylation patterns that we have observed correlate with the regulation of a specific target gene, COX6, which encodes subunit VI of cytochrome c oxidase. Transcription of COX6 is repressed by growth in medium containing a fermentable carbon source and is derepressed by growth in medium containing a nonfermentable carbon source. COX6 repression-derepression is under the control of the SNF1-SSN6 pathway. This carbon source regulation is exerted through domain 1, a region of the upstream activation sequence UAS6 that binds ABF1 (J. D. Trawick, N. Kraut, F. Simon, and R. O. Poyton, Mol. Cell Biol. 12:2302-2314, 1992). We show that the greater the phosphorylation of ABF1, the greater the transcription of COX6. Furthermore, the ABF1-containing protein-DNA complexes formed at domain 1 differ according to the phosphorylation state of ABF1 and the carbon source on which the cells were grown. From these findings, we propose that the phosphorylation of ABF1 is involved in glucose repression-derepression of COX6 transcription.

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