scholarly journals Analysis of CMA-DAPI bands and preparation of fluorescent karyotypes in thirty Indian cultivars of Lens culinaris

Caryologia ◽  
2021 ◽  
Author(s):  
Timir baran Jha ◽  
Biplab Kumar Bhowmick ◽  
Partha Roy
Keyword(s):  
Cost Effective ◽  
Fluorochrome Banding ◽  
Banding Patterns ◽  
Plant Chromosomes ◽  
Cost Effective Method ◽  
Production And Consumption ◽  
Breeding Programmes ◽  
Cultivated Species ◽  
Protein Rich ◽  
First Time

India holds a significant rank in production and consumption of the age old protein rich crop Lentil with only one cultivated species and a large number of phenotypically similar cultivars. The need for a reliable and cost effective method of genetic characterization to unravel differences within the Lentil cultivars was felt. The present paper adopted EMA based chromosome preparation followed by staining with two contrasting fluorochromes dyes CMA and DAPI that bind directly to GC and AT rich heterochromatic segments on chromosomes. Analysis of fluorochrome banding pattern furnished a comparative account of genetic diversity within the cultivars that could not be achieved by traditional karyotyping. The marker pair of nucleolar chromosomes (4th and 3rd, majorly) occupied a pivotal position to intensify differences between cultivars in terms of banding patterns around secondary constrictions, suggestive of  yet unknown variation in heterochromatin composition. Our study has strengthened genetic background and relationships of Lentil cultivars. We observed certain types of unusual fluorochrome bands that put forward the exclusivity of Indian germplasm and have questioned the mainstream heterochromatin elements of plant chromosomes captured by CMA-DAPI stains. The comprehensive fluorescent karyotypes of 30 L. culinaris cultivars prepared for the first time, serve as an archetype for the benefit of future breeding programmes in any Indian crop. 

Mitosis and Interphase of the Highly Polyploid Palm Voanioalagerardii (2n = 606 ± 3)

2015 ◽  
Vol 147 (1) ◽  
pp. 70-79 ◽  
Author(s):  
Martin Röser
Keyword(s):  
Nuclear Gene ◽  
Point Of View ◽  
Fluorochrome Banding ◽  
Dna Amount ◽  
Metaphase Chromosomes ◽  
Banding Patterns ◽  
High Polyploid ◽  
Molecular Phylogenetic ◽  
Gene Data ◽  
First Time

The endemic, highly polyploid, monotypic Madagascan palm genus Voanioala (2n ≈ 606) was studied with regard to mitotic stages and interphase. Features of the cell cycle, morphology and sizes of metaphase chromosomes, fluorochrome banding patterns, and silver staining of NORs of such an extremely high polyploid organism are reported for the first time. On a whole, karyokinesis appears to be stable and efficient. A comparison with closely related palm taxa reveals that V. gerardii is 38-ploid, and comparison with the closely related genera Butia, Cocos (coconut) and Jubaea shows that Voanioala has lost ∼35% of its DNA amount subsequent to polyploidization and has suppressed between 74 and 88% of the original nucleolar organizers. About 10 active NORs are present in the nuclei. An auto- or allopolyploid origin of Voanioala is discussed with respect to currently available nuclear gene data. The biogeographic relations to Jubaeopsis, a closely related, monotypic, apparently likewise relict palm genus from eastern mainland South Africa are discussed. From a cytogenetic point of view, a common polyploid ancestor of both genera is most likely, but the available molecular phylogenetic data are not univocal.

Evaluation of maize microsatellite markers for genetic diversity analysis and fingerprinting in sugarcane

Genome ◽  
2003 ◽  
Vol 46 (3) ◽  
pp. 394-403 ◽  
Author(s):  
A Selvi ◽  
N V Nair ◽  
N Balasundaram ◽  
T Mohapatra
Keyword(s):  
Microsatellite Markers ◽  
Cost Effective ◽  
Diversity Analysis ◽  
Phenetic Analysis ◽  
Potential Cost ◽  
Banding Patterns ◽  
Genomic Libraries ◽  
Cost Effective Method ◽  
Low Diversity ◽  
Species Specific

The use of maize microsatellite markers as a potential cost-effective method for molecular analysis of sugarcane was evaluated. Of the 34 primer pairs obtained from maize genomic libraries, 14 showed repeatable amplifications in Saccharum species clones, commercial hybrids, and the related genera Erianthus, accounting for 41.17% cross transferability. Complex banding patterns were encountered in sugarcane with the number of amplified fragments ranging from 7 to 14 with an average of 10 per primer, indicating the high polyploidy and heterozygosity existing in sugarcane. Phenetic analysis of the SSR polymorphisms produced by nine primers could clearly differentiate the different species of Saccharum and Erianthus and revealed the relationships that existed between them. Genetic similarity co-efficient indicated low diversity existing among the S. officinarum clones (82%) and a relatively higher level of diversity in the S. spontaneum clones (69.7%). Higher level of divergence of Erianthus from Saccharum was also clearly estabilished. Five primers produced genus- and species-specific fragments for Erianthus, S. spontaneum, S. officinarum, and S. barberi. The polymorphic primers, when tested on a panel of 30 commercial sugarcane cultivars, revealed a broad range (32.4–83.3%) of pair-wise similarity values, indicating their ability to detect high levels of polymorphism. A combination of two primers could differentiate all the varieties, further emphasizing their potential in fingerprinting and varietal identification.Key words: maize microsatellites, Saccharum, Erianthus, diversity analysis, fingerprinting.

scholarly journals Chromosome Numbers of Four Nigerian Species of Cola Schott. & Endlicher (Sterculiaceae).

2005 ◽  
Vol 54 (1-6) ◽  
pp. 42-44 ◽  
Author(s):  
P. O. Adebola ◽  
J. A. Morakinyo
Keyword(s):  
Chromosome Numbers ◽  
Wild Species ◽  
Mitotic Chromosome ◽  
Chromosome Morphology ◽  
High Symmetry ◽  
Chromosome Counts ◽  
Ploidy Levels ◽  
Breeding Programmes ◽  
Cultivated Species ◽  
First Time

Abstract This paper reports the results of chromosome countings in four wild Cola species (Cola lateritia, C. ballayi, C. verticillata and C. gigantea). Cytological investigation of these species gave a constant mitotic chromosome counts of 2n = 4x = 40 for the first time. The karyotypes were found to consist mostly of metacentric and submetacentric chromosomes. In addition to confirming the chromosome numbers and ploidy levels in these species, the results also reveals high symmetry and homogeneity of the karyotypes with those of the cultivated species (C. nitida and C. acuminata) already reported. The similarity in chromosome morphology between the cultivated and wild species indicate their common origin and suggests the possibility of using these wild species as bridges for gene transfer in Cola breeding programmes involving interspecific hybridization.

scholarly journals Natural iron ore as a novel substrate for the biosynthesis of bioactive-stable ZnO@CuO@iron ore NCs: a magnetically recyclable and reusable superior nanocatalyst for the degradation of organic dyes, reduction of Cr(vi) and adsorption of crude oil aromatic compounds, including PAHs

RSC Advances ◽  
2018 ◽  
Vol 8 (62) ◽  
pp. 35557-35570 ◽  
Author(s):  
S. Mohammad Sajadi ◽  
Kamal Kolo ◽  
Mohammad Pirouei ◽  
Sarbast A. Mahmud ◽  
Jagar. A. Ali ◽  
...  
Keyword(s):  
Crude Oil ◽  
Aromatic Compounds ◽  
Iron Ore ◽  
Organic Dyes ◽  
Cost Effective ◽  
Natural Substrate ◽  
Cost Effective Method ◽  
Natural Iron ◽  
First Time

For the first time, stable ZnO@CuO@iron ore nanocomposites (NCs) were green synthesized using magnetic iron ore as a natural substrate through an eco-friendly, simple and cost-effective method.

scholarly journals PTO-QuickStep: A Fast and Efficient Method for Cloning Random Mutagenesis Libraries

2019 ◽  
Vol 20 (16) ◽  
pp. 3908 ◽  
Author(s):  
Pawel Jajesniak ◽  
Kang Lan Tee ◽  
Tuck Seng Wong
Keyword(s):  
Directed Evolution ◽  
Random Mutagenesis ◽  
Cost Effective ◽  
Conventional Pcr ◽  
Cost Effective Method ◽  
Cloning Method ◽  
Point Integration ◽  
First Time ◽  
Plasmid Amplification ◽  
Target Plasmid

QuickStep is a cloning method that allows seamless point integration of a DNA sequence at any position within a target plasmid using only Q5 High-Fidelity DNA Polymerase and DpnI endonuclease. This efficient and cost-effective method consists of two steps: two parallel asymmetric PCRs, followed by a megaprimer-based whole-plasmid amplification. To further simplify the workflow, enhance the efficiency, and increase the uptake of QuickStep, we replaced the asymmetric PCRs with a conventional PCR that uses phosphorothioate (PTO) oligos to generate megaprimers with 3′ overhangs. The ease and speed of PTO-QuickStep were demonstrated through (1) right-first-time cloning of a 1.8 kb gene fragment into a pET vector and (2) creating a random mutagenesis library for directed evolution. Unlike most ligation-free random mutagenesis library creation methods (e.g., megaprimer PCR of whole plasmid [MEGAWHOP]), PTO-QuickStep does not require the gene of interest to be precloned into an expression vector to prepare a random mutagenesis library. Therefore, PTO-QuickStep is a simple, reliable, and robust technique, adding to the ever-expanding molecular toolbox of synthetic biology and expediting protein engineering via directed evolution.

One-pot controllable synthesis of CoFe2O4solid, hollow and multi-shell hollow nanospheres as superior anode materials for lithium ion batteries

2017 ◽  
Vol 5 (41) ◽  
pp. 21994-22003 ◽  
Author(s):  
Yun Qi ◽  
Bingqiu Liu ◽  
Lingyu Zhang ◽  
Yuqiu Huo ◽  
Lu Li ◽  
...  
Keyword(s):  
Lithium Ion Batteries ◽  
Anode Materials ◽  
Large Scale ◽  
Lithium Ion ◽  
Cost Effective ◽  
Hollow Nanospheres ◽  
Controllable Synthesis ◽  
One Pot ◽  
Cost Effective Method ◽  
First Time

CFO-SNSs, CFO-HNSs and MS-CFO-HNSs are controllably fabricated for the first time by a straightforward and cost-effective method on a large scale as superior anode materials for lithium ion batteries.

Major histocompatibility I gene diversity in the critically endangered Laysan duck (Anas laysanensis).

2014 ◽  
Vol 20 (1) ◽  
pp. 86 ◽  
Author(s):  
Philip Lavretsky ◽  
Andrew Engilis Jr ◽  
Jefferey L Peters
Keyword(s):  
Captive Breeding ◽  
Gene Diversity ◽  
Cost Effective ◽  
Major Histocompatibility ◽  
Mhc I ◽  
Island Endemic ◽  
Low Genetic Diversity ◽  
Cost Effective Method ◽  
Founder Populations ◽  
Breeding Programmes

Quantifying the genetic composition of founder populations is important to the success of reintroduction programmes, especially for bottlenecked and/or specialized species, such as island endemics. By implementing admixture schemes based on genetic variability, captive breeding programmes can minimize the detrimental effects of bottlenecking, inbreeding depression, outbreeding depression, etc. Particular attention has been given to genes within the major histocompatibility complex (MHC) due to their direct correlation to an individual’s immunity. However, isolating and amplifying MHC haplotypes remains difficult owing to the high diversity and paralogous nature. We describe a method of MHC I haplotype isolation based on an iterative process of primer design for the endangered island endemic, the Laysan duck (Anas laysanensis). Ultimately, haplotype-specific primers allow for direct genotyping after gel electrophoresis based on the presence/absence of their respective amplicons. Using the developed techniques, a total of eight unique haplotypes were isolated and assayed across 21 Laysan duck individuals from Laysan Island (N = 10) and Midway Atoll (N = 11). The presence/absence of seven haplotypes were variable across individuals with three haplotypes present in 95% of individuals, three in 38% of individuals, and one in 90% of individuals. The protocols described herein provide a simple, cost-effective method for isolating haplotypes and monitoring existing MHC variation in Laysan ducks, and the general approach can be applied to other molecular markers and species with low genetic diversity.

CAD Of Anticorrosive Protection Of Steel Structures

2019 ◽  
pp. 18-23
Keyword(s):  
Protective Coating ◽  
Computer Aided Design ◽  
Steel Structures ◽  
Cost Effective ◽  
Operating Conditions ◽  
Computational Tool ◽  
Protection Method ◽  
Cost Effective Method ◽  
The Cost ◽  
Aided Design

The choice of cost-effective method of anticorrosive protection of steel structures is an urgent and time consuming task, considering the significant number of protection ways, differing from each other in the complex of technological, physical, chemical and economic characteristics. To reduce the complexity of solving this problem, the author proposes a computational tool that can be considered as a subsystem of computer-aided design and used at the stage of variant and detailed design of steel structures. As a criterion of the effectiveness of the anti-corrosion protection method, the cost of the protective coating during the service life is accepted. The analysis of existing methods of steel protection against corrosion is performed, the possibility of their use for the protection of the most common steel structures is established, as well as the estimated period of effective operation of the coating. The developed computational tool makes it possible to choose the best method of protection of steel structures against corrosion, taking into account the operating conditions of the protected structure and the possibility of using a protective coating.

Monitoring effluent quality in hypertrophic wastewater reservoirs using remote sensing

1996 ◽  
Vol 33 (8) ◽  
pp. 23-29 ◽  
Author(s):  
I. Dor ◽  
N. Ben-Yosef
Keyword(s):  
Water Quality ◽  
Theoretical Model ◽  
Principal Component ◽  
Cost Effective ◽  
Operational Parameters ◽  
Effluent Quality ◽  
Optical Images ◽  
Routine Monitoring ◽  
Cost Effective Method ◽  
Wastewater Quality

About one hundred and fifty wastewater reservoirs store effluents for irrigation in Israel. Effluent qualities differ according to the inflowing wastewater quality, the degree of pretreatment and the operational parameters. Certain aspects of water quality like concentration of organic matter, suspended solids and chlorophyll are significantly correlated with the water column transparency and colour. Accordingly optical images of the reservoirs obtained from the SPOT satellite demonstrate pronounced differences correlated with the water quality. The analysis of satellite multispectral images is based on a theoretical model. The model calculates, using the radiation transfer equation, the volume reflectance of the water body. Satellite images of 99 reservoirs were analyzed in the chromacity space in order to classify them according to water quality. Principal Component Analysis backed by the theoretical model increases the method sensitivity. Further elaboration of this approach will lead to the establishment of a time and cost effective method for the routine monitoring of these hypertrophic wastewater reservoirs.

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