scholarly journals Metagenomic Analysis of Bacterial Communities in Water and Soil of the Fulani and non-Fulani in Nigeria

2020 ◽  
Vol 14 (12) ◽  
Author(s):  
Ayorinde O Afolayan ◽  
Funmilola A Ayeni

Introduction: Interactions between environmental factors (water and soil) and humans are inevitable, particularly in rural and semi-urbanized regions. As such, knowledge on the microbial constituents of these environmental factors is key to understanding potential risk to public health. However, the microbial profile of soil and water present in vulnerable human communities in Nigeria is currently unknown. This study sought to investigate the composition of soil and water microbiota in the environment inhabited by recently studied human communities (the Fulani nomadic group and the urbanized Jarawa ethnic group) and estimate the contribution of these environmental factors to the microbiome of the aforementioned human communities. Methodology: Soil and water samples were collected from the Fulani and non-Fulani community in Jengre (Plateau State, Nigeria) and Jos (Plateau State, Nigeria), respectively. Genomic DNA was extracted from these environmental samples, followed by Illumina sequencing of the V4 region of the 16S rRNA gene and bioinformatics analysis via Quantitative Insights into Microbial Ecology QIIME. Results: There is abundance of Proteobacteria (43%) signature members in soil samples obtained from both human communities. Analysis of the water samples revealed the abundance of Proteobacteria, particularly in water sourced from the borehole (Fulani). Pseudomonas (30%) had higher relative abundance in the drinking water of the Fulani. Conclusions: The drinking water of the Fulani could be a potential health risk to the studied Fulani community. Factors that increase the abundance of public health threats and health risk, such as hygiene practices, soil and water quality need to be studied further for the improvement of health in vulnerable populations.

2020 ◽  
Author(s):  
Chalachew Yenew ◽  
Melese Kebede ◽  
Melkamu Mulat

Abstract Objectives: This study aims to determine the contamination Antimicrobial-Resistance Pathogen load and Public Health Risk of Drinking Water in the case of Debre Tabor Town, Northwest Ethiopia.Study design and period: A laboratory-based cross-sectional study design was employed from March to May 2020.Methods: A total of 60 water samples were collected from the household tap and household drinking water storage container by following the standard microbial analysis method. Besides Sanitary survey was conducted for the municipal water supply system. Water samples were analyzed for differences in bacteriological parameters and drug-susceptibility patterns. Descriptive statistics, independent sample t-test, and multiple linear regression models were used to analyze the data.Results: The drinking water was mostly contaminated with multiple antibiotics-resistance waterborne Escherichia coli 35% (95% CI: 31.2%, 46.9%), Salmonella 22.7% (95% CI: 23.2%, 28.7%), and Shigella 15% (95% CI: 11.2%, 20.9%). Approximately 52.78% and 36.11% of the tap and an equal 23.33% of the household storage container water samples were categorized under low and intermediate risks respectively, and the overall health risk index of the water samples showed that 45.83%, 41.67%, and 12.5%, of them, are categorized under low, intermediate and high-risk classes respectively.Conclusion: The contamination of drinking water with antimicrobial-resistant waterborne bacteria in the community could indicate the likelihood of the occurrence of treatment failure and increased mortality. Hence, proper drinking water treatment and strict supervision are needed to prevent the contamination of the water and related consequences.


2020 ◽  
Vol 2020 ◽  
pp. 1-7
Author(s):  
Nikhat Khan ◽  
Ghazala Yaqub ◽  
Tahreem Hafeez ◽  
Madiha Tariq

The present study was conducted to assess the contamination and health risk due to the presence of pesticides in fruits and vegetables. A total of six vegetable samples, 3 fruit samples, 7 soil samples, and 6 water samples were collected from three different sampling points. High-performance liquid chromatography using acetonitrile and water solvent system was employed for the quantitative and qualitative analysis. The pesticides having the highest health risk in vegetables were Bifenthrin and Difenoconazole as their health risk index was found to be exceeding the cut off value of 1. Imidacloprid was found in all vegetable samples but had no associated health risk, as all the health risk indices for imidacloprid were below the cut off value of 1. The pesticide Glyphosate detected in only one sample had no health risk associated with it. Health risks in fruits were the highest for Amamectin, Bifenthrin, and Difenoconazole and were crossing the threshold limit of 1. The results reveal the health risk indices of Bifenthrin and Difenoconazole range from 7.8 to 12.46 in vegetables and from 2.704 to 30.454 in fruits, hence, posing a serious threat to human health. Amamectin, although detected in only fruit and water samples, had the highest health risk of 30.454. Imidacloprid and Glyphosate found in every fruit sample had no associated health risk. The results revealed the presence of pesticides in water, soil, fruit, and vegetable samples. Consumers utilizing these vegetables and fruits are under potential health risks due to the presence of pesticides in soil and water. Practical Applications. In this study, an analytical method for detecting pesticides in a variety of environmental matrices including fruits, vegetables, water, and the soil is presented and the health risk associated with the presence of pesticides in a wide range of fruits and vegetables is assessed. It is highly significant because in developing countries agricultural activities contribute majorly toward the total gross domestic product and pesticides are extensively used to control, prevent, devastate, and diminish any harmful pest that destroys crops.


2017 ◽  
Vol 62 (1) ◽  
pp. 61-77
Author(s):  
Milos Rajkovic ◽  
Mirjana Stojanovic ◽  
Sladjana Milojkovic

In order to verify the content of macro- and microelements in drinking water in the village of Dubravica in the Branicevo district, which has no centralized water supply system, an analysis of the water sampled from two individual wells was conducted using the indirect method recommended by Rajkovic and associates. Tests on the RDA and AAS showed that: Al, Fe, Cr, Pb and U were in concentrations higher than the values allowed by Regulations on the hygienic quality of drinking water. To determine the risk of the presence of toxic metals in the elevated concentrations, the assessment of short-term and long-term potential carcinogenic risks was conducted. Based on the results obtained in the tested water samples, it is noticed that the value of the coefficient of risk (CR) was less than 1 for all potentially toxic metals that were determined in drinking water, which implies that there is no short-term carcinogenic potential risk to human health. Based on the results of the long-term potential risk for the occurrence and development of cancer, the risk of getting cancer of Cr was identified in the inhabitants of the village that used potable water of the first sample. In case of Pb, a risk of developing cancer, concerning the first sample of drinking water, may occur in 44 out of 1000 people and regarding the second sample, in 183 out of 1000 people. Based on the calculated estimates of the long-term health risk related to the presence of U in drinking water, it can be seen that there is a health risk related to the use of both water samples. On the basis of the calculated estimates of the long-term health risk related to the presence of uranium in drinking water, it can be noticed that the use of both water samples may lead to the potential risk of developing cancer: in 24.5 inhabitants regarding the first water sample and in 10.3 out of 1000 inhabitants in the case of the second water sample.


Author(s):  
Simge Varol

Abstract Groundwater is an important water resource used for drinking, domestic and agricultural activities in Akşehir and surroundings. However, intensive agricultural and human activities in the region adversely affect groundwater quality. In this study, 31 water samples were collected from wells. According to the Piper diagram, groundwater in the study area was in the Ca–Mg–HCO3 and Ca–HCO3 water facies. As a result, it is not appropriate to use groundwater as drinking water in the study area in terms of trace elements and pollutant analysis results of water samples compared to limit values determined by WHO and ITHASY drinking water guidelines. The arsenic concentration in groundwater was studied in detail. The origin and concentration of arsenic in groundwater is associated with agricultural activities and pesticides in the region. Accordingly, a health risk assessment was carried out for the use of groundwater in the study area as drinking water. The results for all samples analyzed indicate that the groundwater concerned was not suitable for drinking purposes because of arsenic concentrations which exceeded maximum acceptable levels.


2010 ◽  
Vol 76 (17) ◽  
pp. 5965-5971 ◽  
Author(s):  
W. J. Lodder ◽  
H. H. J. L. van den Berg ◽  
S. A. Rutjes ◽  
A. M. de Roda Husman

ABSTRACT The quality of drinking water in the Netherlands has to comply with the Dutch Drinking Water Directive: less than one infection in 10,000 persons per year may occur due to consumption of unboiled drinking water. Since virus concentrations in drinking waters may be below the detection limit but entail a public health risk, the infection risk from drinking water consumption requires the assessment of the virus concentrations in source waters and of the removal efficiency of treatment processes. In this study, samples of source waters were taken during 4 years of regular sampling (1999 to 2002), and enteroviruses, reoviruses, somatic phages, and F-specific phages were detected in 75% (range, 0.0033 to 5.2 PFU/liter), 83% (0.0030 to 5.9 PFU/liter), 100% (1.1 to 114,156 PFU/liter), and 97% (0.12 to 14,403 PFU/liter), respectively, of 75 tested source water samples originating from 10 locations for drinking water production. By endpoint dilution reverse transcription-PCR (RT-PCR), 45% of the tested source water samples were positive for norovirus RNA (0.22 to 177 PCR-detectable units [PDU]/liter), and 48% were positive for rotavirus RNA (0.65 to 2,249 PDU/liter). Multiple viruses were regularly detected in the source water samples. A significant correlation between the concentrations of the two phages and those of the enteroviruses could be demonstrated. The virus concentrations varied greatly between 10 tested locations, and a seasonal effect was observed. Peak concentrations of pathogenic viruses occur in source waters used for drinking water production. If seasonal and short-term fluctuations coincide with less efficient or failing treatment, an unacceptable public health risk from exposure to this drinking water may occur.


1998 ◽  
Vol 38 (12) ◽  
pp. 73-76 ◽  
Author(s):  
B. S. W. Ho ◽  
T.-Y Tam

A total of 64 beach water samples with various bacteriological quality (Grades 1 to 4) were analysed for their bacteriological and parasitological contents (E coli and Giardia cysts respectively). Results indicated that Giardia cysts were detected in less than 10% of the Grade 1 beach water samples with E coli concentrations of <24/100mL. For Grades 2, 3 & 4 beach water samples, Giardia cysts were found, respectively, in 85, 50 and 64% of the samples. Except for one beach water sample which had an unusually high concentration of Giardia cysts (23 cysts/L), they were generally present at moderate concentrations (<10 cysts/L) in all other beach water samples. Despite moderate levels of Giardia cysts present in beach water of different grades, the potential health risk faced by swimmers bathing in local beach water needs to be carefully assessed as Giardia is known to have a low infectious dose.


2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Jun Diao ◽  
Yinyin Xia ◽  
Xuejun Jiang ◽  
Jingfu Qiu ◽  
Shuqun Cheng ◽  
...  

Abstract Background Silicon dioxide nanoparticles (SiO2NPs) are widely used as additive in the food industry with controversial health risk. Gut microbiota is a new and hot topic in the field of nanotoxicity. It also contributes a novel and insightful view to understand the potential health risk of food-grade SiO2NPs in children, who are susceptible to the toxic effects of nanoparticles. Methods In current study, the young mice were orally administrated with vehicle or SiO2NPs solution for 28 days. The effects of SiO2NPs on the gut microbiota were detected by 16S ribosomal RNA (rRNA) gene sequencing, and the neurobehavioral functions were evaluated by open field test and Morris water maze. The level of inflammation, tissue integrity of gut and the classical indicators involved in gut–brain, gut–liver and gut–lung axis were all assessed. Results Our results demonstrated that SiO2NPs significantly caused the spatial learning and memory impairments and locomotor inhibition. Although SiO2NPs did not trigger evident intestinal or neuronal inflammation, they remarkably damaged the tissue integrity. The microbial diversity within the gut was unexpectedly enhanced in SiO2NPs-treated mice, mainly manifested by the increased abundances of Firmicutes and Patescibacteria. Intriguingly, we demonstrated for the first time that the neurobehavioral impairments and brain damages induced by SiO2NPs might be distinctively associated with the disruption of gut–brain axis by specific chemical substances originated from gut, such as Vipr1 and Sstr2. Unapparent changes in liver or lung tissues further suggested the absence of gut–liver axis or gut–lung axis regulation upon oral SiO2NPs exposure. Conclusion This study provides a novel idea that the SiO2NPs induced neurotoxic effects may occur through distinctive gut–brain axis, showing no significant impact on either gut–lung axis or gut–liver axis. These findings raise the exciting prospect that maintenance and coordination of gastrointestinal functions may be critical for protection against the neurotoxicity of infant foodborne SiO2NPs.


Author(s):  
Tuğba Sağlam ◽  
Serdar Düşen ◽  
Meral Apaydın Yağcı ◽  
Abdülkadir Yağcı

Objective: The aim of this study was to assess both the presence and seasonal variability of Cryptosporidium spp. and Giardia spp. in Eğirdir Lake within the borders of Isparta province, which is used for drinking, agricultural irrigation and recreational purposes. Method: The research was carried out between July 2016 and January 2017 and water samples were taken from five different stations in three different seasons in Lake Eğirdir. After direct microscopic examination of the samples (Native-Lugol method), they were stained with Modified Acid Fast (MAF), and examined under the light microscope for parasites. Results: Cryptosporidium spp and Giardia spp were detected in 15 water samples in summer months, with an average density of 99.2% and 93.3% respectively, in Lake Eğirdir. In addition, both parasites were also detected intensively in autumn and winter Conclusion: The use of Lake Eğirdir for daily needs of people, agriculture andrecreational purposes cause increase in protozoal density. Thus, it is necessary to conduct parasitological studies on Lake Eğirdir, especially during the periods of swimming tourism, to determine the protozoal epidemiology in humans and animals. In addition, it is important to carry out adequate disinfection processes and plan the necessary control programs in terms of public health in the regions where Lake Eğirdir is used as drinking water.


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